Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016657.1

Orthogroup ID

OG0006734

Physical Location & Seq

Genomic Coordinates Reverse (-)

53043 .. 59204

Gene Structure 6162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016657.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

taccagatttcatcactgcacattaccttcccatctgaaaaggagtgggacaaactgagtgaaaaggggtttctacaaagaattggaatgcagtaccattggaaaaatcgtaattataaaaattttgatgagttcttgatggacatgaagcaaagtaaaaggaaaaatattcgtcaagagcggaagaagattttgcagcagaatttgactatgaaacggttgcaaggcgatgaaataaaggctagacactgggatgccttctataacttctaccgcaacaccactgacaacaagtggggtaccccgtacctgactagggaattctttcacaacatagggtcaaagatgggagatcaggtactccttgttgttgctgaagagggggatgagcttgttgctggagctcttaatcttattggaggagacacgttatttggacgcctatggggatgccatccccgagcttattatccaagtttgcattttgaagcatgctattaccaggcaatagaagctgcaatcgaacttgatttaagcacagtggaggcaggagcgcagggtgagcataagattcagaggggttatatgcctgtggccacgtatagctgccattacctgactaatcaaagtttcaggaaggccatagaggactttcttgtgcgtgaatcaactcaggttaagcttgtgatgaaactactgcatgattctggtccttttaaggaaggtgtacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FemAB_like

Protein Analysis

244

Amino Acids

28.62

Weight (kDa)

8.6

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23390 AT2G23390
fragaria_vesca	FvH4_5g27990 FvH4_5g27990 FvH4_5g27990 FvH4_5g27990 FvH4_5g27990
malus_domestica	MD08G1247400.v1.1
prunus_persica	Prupe.1G584700_v2.0.a1 Prupe.1G584700_v2.0.a1
pyrus_communis	pycom08g21430
rosa_chinensis	RchiOBHm_Chr7g0220181 RchiOBHm_Chr7g0220471
rosa_laevigata	RLG00000002252
rosa_multiflora	Rmu_sc0001136.1_g000001 Rmu_sc0006361.1_g000011 Rmu_sc0016657.1_g000010
rosa_roxburghii	Rroxscaffold_3G00239740
rosa_rugosa	Rorug07G0190500 Rorug07G0190500 Rorug07G0190500
rosa_samantha	Rh7AG333000 Rh7BG324200 Rh7CG350500 Rh7DG329100
rosa_wichuraiana	Rw7G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	299
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	2 cut(s)	181, 274
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	3 cut(s)	121, 202, 320
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	5 cut(s)	95, 301, 308, 360, 729
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	6 cut(s)	391, 404, 464, 515, 606, 682
AluI	AGCT	6 cut(s)	391, 404, 464, 515, 606, 682
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	417
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	2 cut(s)	594, 639
ApeKI	GCWGC	3 cut(s)	196, 515, 606
ApoI	RAATTY	3 cut(s)	121, 202, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
Asp700I	GAANNNNTTC	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	3 cut(s)	208, 502, 593
BccI	CCATC	4 cut(s)	40, 133, 340, 462
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	2 cut(s)	243, 315
BisI	GCNGC	3 cut(s)	197, 516, 607
BlsI	GCNGC	3 cut(s)	198, 517, 608
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	244, 440
BmuI	ACTGGG	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	503
BseGI	GGATG	4 cut(s)	259, 391, 454, 455
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	47, 686
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	208, 502, 593
BshFI	GGCC	2 cut(s)	596, 641
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	596, 641
BsoBI	CYCGRG	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	2 cut(s)	181, 274
BspANI	GGCC	2 cut(s)	596, 641
BspCNI	CTCAG	2 cut(s)	48, 685
BspLI	GGNNCC	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	219, 541
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	727
BstBAI	YACGTR	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	2 cut(s)	56, 672
BstF5I	GGATG	4 cut(s)	259, 391, 454, 455
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 562
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	208, 502, 593
BsuRI	GGCC	2 cut(s)	596, 641
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	4 cut(s)	259, 391, 454, 455
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	4 cut(s)	14, 247, 282, 546
Cac8I	GCNNGC	1 cut(s)	493
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	710
CseI	GACGC	1 cut(s)	447
Csp6I	GTAC	5 cut(s)	94, 300, 307, 359, 728
CviAII	CATG	3 cut(s)	145, 492, 701
CviJI	RGCY	9 cut(s)	242, 391, 404, 464, 515, 596, 606, 641, 682
CviKI_1	RGCY	9 cut(s)	242, 391, 404, 464, 515, 596, 606, 641, 682
CviQI	GTAC	5 cut(s)	94, 300, 307, 359, 728
DdeI	CTNAG	2 cut(s)	56, 672
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	3 cut(s)	148, 495, 704
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	144, 491, 700
Fnu4HI	GCNGC	3 cut(s)	197, 516, 607
FokI	GGATG	4 cut(s)	266, 398, 441, 462
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	197, 516, 607
FspBI	CTAG	2 cut(s)	243, 315
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	3 cut(s)	197, 516, 607
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	596, 641
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	3 cut(s)	148, 495, 704
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	3 cut(s)	571, 665, 704
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	728, 730
Hpy188I	TCNGA	2 cut(s)	37, 576
Hpy188III	TCNNGA	3 cut(s)	136, 176, 634
Hpy8I	GTNNAC	2 cut(s)	728, 730
HpyAV	CCTTC	4 cut(s)	37, 268, 631, 716
HpyCH4III	ACNGT	2 cut(s)	219, 541
HpyCH4IV	ACGT	2 cut(s)	428, 599
HpyCH4V	TGCA	7 cut(s)	19, 91, 196, 223, 481, 518, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 562
HpyF3I	CTNAG	2 cut(s)	56, 672
HpySE526I	ACGT	2 cut(s)	428, 599
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	148, 495, 704
HspAI	GCGC	1 cut(s)	554
KpnI	GGTACC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	401, 551
Lsp1109I	GCAGC	3 cut(s)	208, 502, 593
LweI	GCATC	2 cut(s)	244, 440
MaeI	CTAG	2 cut(s)	243, 315
MaeII	ACGT	2 cut(s)	428, 599
MalI	GATC	1 cut(s)	354
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	196, 199, 389
MhlI	GDGCHC	1 cut(s)	406
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	5 cut(s)	81, 112, 121, 202, 320
MluNI	TGGCCA	1 cut(s)	596
MnlI	CCTC	5 cut(s)	373, 413, 538, 570, 640
Mox20I	TGGCCA	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	4 cut(s)	408, 533, 678, 717
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	512, 562
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	148, 495, 704
NlaIV	GGNNCC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	495
PaeI	GCATGC	1 cut(s)	495
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	571, 665, 704
PkrI	GCNGC	3 cut(s)	198, 517, 608
Ppu21I	YACGTR	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	710
RsaI	GTAC	5 cut(s)	95, 301, 308, 360, 729
RsaNI	GTAC	5 cut(s)	94, 300, 307, 359, 728
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	408, 533, 678, 717
SatI	GCNGC	3 cut(s)	197, 516, 607
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	244, 440
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	5 cut(s)	81, 112, 121, 202, 320
SsiI	CCGC	2 cut(s)	181, 274
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	243, 315
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	219, 541
TaiI	ACGT	2 cut(s)	431, 602
TaqI	TCGA	1 cut(s)	522
TasI	AATT	5 cut(s)	81, 112, 121, 202, 320
TatI	WGTACW	1 cut(s)	727
TfiI	GAWTC	3 cut(s)	571, 665, 704
Tru1I	TTAA	4 cut(s)	408, 533, 678, 717
Tru9I	TTAA	4 cut(s)	408, 533, 678, 717
TscAI	CASTG	4 cut(s)	21, 254, 289, 546
TseI	GCWGC	3 cut(s)	196, 515, 606
TspDTI	ATGAA	4 cut(s)	161, 227, 246, 704
TspRI	CASTG	4 cut(s)	21, 254, 289, 546
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	3 cut(s)	121, 202, 320
XceI	RCATGY	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	243, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.