RchiOBHm_Chr7g0220471

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006734
Physical Location & Seq
Forward (+)
39477342 .. 39482489
5148 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19736

Sequence Viewer

Length: 738 bp
ATGGGAGGAATCTCAGAGGGGAAGCCTAGTAAGATATCGGTTTCAGTCATTTCTTCAATCTCTGAGGTCTCATCCTCTGACTGGGATGCGTGCAGTTTGGATGCTACCGGCGCTGATAAATATAACCCATTTCTTACTCATGCTTTTCTTTCAAGCTTGGAACAGTCGGGTTCTGCAGTCAAGGAAACAGGATGGAATCCAAGCCTTATCGTTGCCAAGGATGCAAATGAAAATACTTTAGGTGTTGTTCCACTTTATCTTAAAGGTTTAGCATCTGCTCTTCATTCTTATGGTGAATTTGTTTTTGATCATTCCTGGGCTGATGCATACTATAGTTTTGGGTCAAGATATTATCCAAAGTTACAATGTTGTGTCCCTTTTACTCCAGTAACTGGCCCAAGGATTTTAGTACGGAATACCTTGTTCAAAGATCAAGTTTTTGACATCATAGTTTCTGCTCTTAAGGATCTGACGGCCAAGTACCAGATTTCATCACTGCACATTAGTGACATTACCTTCCCATCTGAAAAGGAGTGGGACAAACTGAATGAAAAGGGGTTTCTACAAAGAATTGGAATGCAGTACCATTGGAAAAATCGTAATTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGGAAGAAGGTTGGTCCTTTTATCATGGTTTCTTACTTTTTATTTCGTGTAATGAACAAGTTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

245

Amino Acids

27.88

Weight (kDa)

8.95

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FemAB_like PF04339 19 - 227 4.7e-72 Peptidogalycan biosysnthesis/recognition
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 670
AciI CCGC 1 cut(s) 670
AclWI GGATC 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 296, 610
AfaI GTAC 3 cut(s) 411, 482, 584
AfiI CCNNNNNNNGG 2 cut(s) 81, 392
AflII CTTAAG 1 cut(s) 461
AgsI TTSAA 3 cut(s) 57, 153, 427
AjnI CCWGG 1 cut(s) 314
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 474
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 2 cut(s) 394, 474
ApoI RAATTY 2 cut(s) 296, 610
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 395, 683
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 683
BccI CCATC 3 cut(s) 186, 529, 622
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 2 cut(s) 174, 331
BfoI RGCGCY 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 395, 683
BmrFI CCNGG 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 5 cut(s) 76, 91, 211, 281, 313
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 216, 315, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 392
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 3 cut(s) 86, 386, 397
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 3 cut(s) 216, 315, 398
BseGI GGATG 5 cut(s) 71, 91, 106, 197, 226
BseLI CCNNNNNNNGG 2 cut(s) 81, 392
BseMII CTCAG 2 cut(s) 27, 54
BseNI ACTGG 3 cut(s) 86, 386, 397
BsgI GTGCAG 2 cut(s) 112, 482
BshFI GGCC 2 cut(s) 396, 476
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 2 cut(s) 359, 551
BslI CCNNNNNNNGG 2 cut(s) 81, 392
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 359, 551
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 2 cut(s) 396, 476
Bso31I GGTCTC 1 cut(s) 73
Bsp143I GATC 3 cut(s) 307, 430, 466
BspACI CCGC 1 cut(s) 670
BspANI GGCC 2 cut(s) 396, 476
BspCNI CTCAG 2 cut(s) 26, 55
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 474
BspQI GCTCTTC 1 cut(s) 285
BspTI CTTAAG 1 cut(s) 461
BspTNI GGTCTC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 3 cut(s) 86, 386, 397
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 216, 315, 398
BssMI GATC 3 cut(s) 307, 430, 466
BssT1I CCWWGG 2 cut(s) 216, 398
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 13, 63
BstF5I GGATG 5 cut(s) 71, 91, 106, 197, 226
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 3 cut(s) 310, 433, 469
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 307, 430, 466
BstMWI GCNNNNNNNGC 2 cut(s) 110, 221
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 174, 331
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 396, 476
BtsCI GGATG 5 cut(s) 71, 91, 106, 197, 226
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 395, 683
Csp6I GTAC 3 cut(s) 410, 481, 583
CviAII CATG 3 cut(s) 140, 634, 694
CviJI RGCY 6 cut(s) 25, 156, 204, 320, 396, 476
CviKI_1 RGCY 6 cut(s) 25, 156, 204, 320, 396, 476
CviQI GTAC 3 cut(s) 410, 481, 583
DdeI CTNAG 2 cut(s) 13, 63
DpnI GATC 3 cut(s) 309, 432, 468
DpnII GATC 3 cut(s) 307, 430, 466
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 216, 398
Eco31I GGTCTC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 36
EcoT14I CCWWGG 2 cut(s) 216, 398
EcoT22I ATGCAT 1 cut(s) 328
ErhI CCWWGG 2 cut(s) 216, 398
FaeI CATG 3 cut(s) 143, 637, 697
FaqI GGGAC 2 cut(s) 359, 551
FatI CATG 3 cut(s) 139, 633, 693
FbaI TGATCA 1 cut(s) 307
FokI GGATG 5 cut(s) 58, 98, 113, 204, 233
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 369
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 396, 476
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 113
Hin1II CATG 3 cut(s) 143, 637, 697
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 2 cut(s) 9, 196
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 5 cut(s) 16, 64, 79, 471, 526
Hpy188III TCNNGA 3 cut(s) 345, 625, 665
HpyAV CCTTC 2 cut(s) 526, 670
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 6 cut(s) 93, 176, 224, 326, 499, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 221
HpyF3I CTNAG 2 cut(s) 13, 63
Hsp92II CATG 3 cut(s) 143, 637, 697
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 307, 430, 466
LguI GCTCTTC 1 cut(s) 285
LpnPI CCDG 8 cut(s) 67, 121, 174, 301, 328, 378, 399, 497
LweI GCATC 5 cut(s) 76, 91, 211, 281, 313
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 360, 388, 506
MalI GATC 3 cut(s) 309, 432, 468
MbiI CCGCTC 1 cut(s) 670
MboI GATC 3 cut(s) 307, 430, 466
MboII GAAGA 3 cut(s) 45, 272, 685
MflI RGATCY 1 cut(s) 466
MluCI AATT 4 cut(s) 296, 570, 601, 610
MnlI CCTC 3 cut(s) 10, 58, 85
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 2 cut(s) 261, 462
MslI CAYNNNNRTG 2 cut(s) 288, 504
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 582
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 110, 221
NdeII GATC 3 cut(s) 307, 430, 466
NlaIII CATG 3 cut(s) 143, 637, 697
NmuCI GTSAC 1 cut(s) 506
NsiI ATGCAT 1 cut(s) 328
OliI CACNNNNGTG 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 9, 196
PflMI CCANNNNNTGG 1 cut(s) 392
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspPI GGNCC 2 cut(s) 395, 683
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 3 cut(s) 411, 482, 584
RsaNI GTAC 3 cut(s) 410, 481, 583
RseI CAYNNNNRTG 2 cut(s) 288, 504
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 261, 462
Sau3AI GATC 3 cut(s) 307, 430, 466
Sau96I GGNCC 2 cut(s) 395, 683
ScrFI CCNGG 1 cut(s) 316
SetI ASST 7 cut(s) 69, 158, 244, 268, 422, 518, 681
SfaNI GCATC 5 cut(s) 76, 91, 211, 281, 313
SfcI CTRYAG 2 cut(s) 174, 331
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 2 cut(s) 288, 504
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 4 cut(s) 296, 570, 601, 610
SsiI CCGC 1 cut(s) 670
SspI AATATT 1 cut(s) 658
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 2 cut(s) 216, 398
TaaI ACNGT 1 cut(s) 165
TasI AATT 4 cut(s) 296, 570, 601, 610
TfiI GAWTC 2 cut(s) 9, 196
Tru1I TTAA 2 cut(s) 261, 462
Tru9I TTAA 2 cut(s) 261, 462
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 6 cut(s) 243, 272, 480, 564, 650, 737
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 1 cut(s) 501
Van91I CCANNNNNTGG 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 2 cut(s) 296, 610
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.