Peptidogalycan biosysnthesis/recognition
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G23390 AT2G23390 |
| fragaria_vesca | FvH4_5g27990 FvH4_5g27990 FvH4_5g27990 FvH4_5g27990 FvH4_5g27990 |
| malus_domestica | MD08G1247400.v1.1 |
| prunus_persica | Prupe.1G584700_v2.0.a1 Prupe.1G584700_v2.0.a1 |
| pyrus_communis | pycom08g21430 |
| rosa_chinensis | RchiOBHm_Chr7g0220181 RchiOBHm_Chr7g0220471 |
| rosa_laevigata | RLG00000002252 |
| rosa_multiflora | Rmu_sc0001136.1_g000001 Rmu_sc0006361.1_g000011 Rmu_sc0016657.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00239740 |
| rosa_rugosa | Rorug07G0190500 Rorug07G0190500 Rorug07G0190500 |
| rosa_samantha | Rh7AG333000 Rh7BG324200 Rh7CG350500 Rh7DG329100 |
| rosa_wichuraiana | Rw7G028080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 713 |
| AccB1I | GGYRCC | 1 cut(s) | 169 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 656 |
| AccBSI | CCGCTC | 1 cut(s) | 804 |
| AccII | CGCG | 1 cut(s) | 65 |
| AciI | CCGC | 5 cut(s) | 65, 354, 455, 804, 967 |
| AclWI | GGATC | 1 cut(s) | 738 |
| AcsI | RAATTY | 4 cut(s) | 251, 288, 560, 946 |
| AcuI | CTGAAG | 4 cut(s) | 435, 746, 803, 1194 |
| AcyI | GRCGYC | 1 cut(s) | 1237 |
| AfaI | GTAC | 5 cut(s) | 639, 746, 839, 939, 1099 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 109, 110, 360, 656, 747, 1114, 1516 |
| AgsI | TTSAA | 3 cut(s) | 336, 432, 1286 |
| AjnI | CCWGG | 2 cut(s) | 662, 1299 |
| Alw21I | GWGCWC | 3 cut(s) | 187, 1204, 1354 |
| Alw26I | GTCTC | 3 cut(s) | 34, 352, 721 |
| Alw44I | GTGCAC | 1 cut(s) | 183 |
| AlwI | GGATC | 1 cut(s) | 738 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 392, 656 |
| AoxI | GGCC | 4 cut(s) | 388, 658, 1437, 1507 |
| ApaLI | GTGCAC | 1 cut(s) | 183 |
| ApeKI | GCWGC | 2 cut(s) | 1313, 1404 |
| ApoI | RAATTY | 4 cut(s) | 251, 288, 560, 946 |
| AspLEI | GCGC | 2 cut(s) | 374, 927 |
| AspS9I | GGNCC | 3 cut(s) | 389, 659, 1508 |
| AsuHPI | GGTGA | 4 cut(s) | 469, 569, 983, 1370 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BanI | GGYRCC | 1 cut(s) | 169 |
| BanII | GRGCYC | 2 cut(s) | 1204, 1354 |
| BauI | CACGAG | 1 cut(s) | 1257 |
| Bbv12I | GWGCWC | 3 cut(s) | 187, 1204, 1354 |
| BbvI | GCAGC | 2 cut(s) | 1300, 1391 |
| BccI | CCATC | 5 cut(s) | 5, 784, 877, 1138, 1411 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 347, 381 |
| BciT130I | CCWGG | 2 cut(s) | 664, 1301 |
| BclI | TGATCA | 1 cut(s) | 571 |
| BcoDI | GTCTC | 3 cut(s) | 34, 352, 721 |
| BfaI | CTAG | 5 cut(s) | 8, 174, 1041, 1113, 1454 |
| BfmI | CTRYAG | 2 cut(s) | 210, 384 |
| BisI | GCNGC | 2 cut(s) | 1314, 1405 |
| BlsI | GCNGC | 2 cut(s) | 1315, 1406 |
| Bme1390I | CCNGG | 2 cut(s) | 664, 1301 |
| BmgT120I | GGNCC | 3 cut(s) | 389, 659, 1508 |
| BmiI | GGNNCC | 4 cut(s) | 171, 199, 661, 1510 |
| BmrFI | CCNGG | 2 cut(s) | 664, 1301 |
| BmrI | ACTGGG | 1 cut(s) | 1057 |
| BmsI | GCATC | 4 cut(s) | 355, 370, 577, 1213 |
| BmuI | ACTGGG | 1 cut(s) | 1057 |
| BpmI | CTGGAG | 3 cut(s) | 633, 1218, 1368 |
| Bpu10I | CCTNAGC | 2 cut(s) | 495, 1353 |
| BpuEI | CTTGAG | 1 cut(s) | 58 |
| BsaHI | GRCGYC | 1 cut(s) | 1237 |
| BsaI | GGTCTC | 1 cut(s) | 352 |
| BsaJI | CCNNGG | 1 cut(s) | 662 |
| BsaWI | WCCGGW | 1 cut(s) | 1071 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1140, 1170 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 109, 110, 360, 656, 747, 1114, 1516 |
| Bse118I | RCCGGY | 1 cut(s) | 747 |
| Bse1I | ACTGG | 3 cut(s) | 650, 661, 1052 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 489 |
| BseBI | CCWGG | 2 cut(s) | 664, 1301 |
| BseDI | CCNNGG | 1 cut(s) | 662 |
| BseGI | GGATG | 8 cut(s) | 350, 370, 385, 505, 1189, 1252, 1253, 1426 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 109, 110, 360, 656, 747, 1114, 1516 |
| BseMI | GCAATG | 2 cut(s) | 87, 489 |
| BseMII | CTCAG | 5 cut(s) | 333, 732, 791, 1367, 1484 |
| BseNI | ACTGG | 3 cut(s) | 650, 661, 1052 |
| BseRI | GAGGAG | 1 cut(s) | 1233 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BseXI | GCAGC | 2 cut(s) | 1300, 1391 |
| BsgI | GTGCAG | 1 cut(s) | 746 |
| Bsh1236I | CGCG | 1 cut(s) | 65 |
| BshFI | GGCC | 4 cut(s) | 390, 660, 1439, 1509 |
| BshNI | GGYRCC | 1 cut(s) | 169 |
| BsiHKAI | GWGCWC | 3 cut(s) | 187, 1204, 1354 |
| BsiSI | CCGG | 2 cut(s) | 748, 1072 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 109, 110, 360, 656, 747, 1114, 1516 |
| BsmAI | GTCTC | 3 cut(s) | 34, 352, 721 |
| BsmI | GAATGC | 1 cut(s) | 837 |
| BsnI | GGCC | 4 cut(s) | 390, 660, 1439, 1509 |
| Bso31I | GGTCTC | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 3 cut(s) | 187, 1204, 1354 |
| Bsp1407I | TGTACA | 1 cut(s) | 937 |
| Bsp143I | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| BspACI | CCGC | 5 cut(s) | 65, 354, 455, 804, 967 |
| BspANI | GGCC | 4 cut(s) | 390, 660, 1439, 1509 |
| BspCNI | CTCAG | 5 cut(s) | 334, 731, 792, 1366, 1483 |
| BspFNI | CGCG | 1 cut(s) | 65 |
| BspLI | GGNNCC | 4 cut(s) | 171, 199, 661, 1510 |
| BspMAI | CTGCAG | 1 cut(s) | 214 |
| BspPI | GGATC | 1 cut(s) | 738 |
| BspT107I | GGYRCC | 1 cut(s) | 169 |
| BspTNI | GGTCTC | 1 cut(s) | 352 |
| BsrBI | CCGCTC | 1 cut(s) | 804 |
| BsrDI | GCAATG | 2 cut(s) | 87, 489 |
| BsrFI | RCCGGY | 1 cut(s) | 747 |
| BsrGI | TGTACA | 1 cut(s) | 937 |
| BsrI | ACTGG | 3 cut(s) | 650, 661, 1052 |
| BssAI | RCCGGY | 1 cut(s) | 747 |
| BssECI | CCNNGG | 1 cut(s) | 662 |
| BssMI | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| BssNI | GRCGYC | 1 cut(s) | 1237 |
| BssSI | CACGAG | 1 cut(s) | 1257 |
| Bst2BI | CACGAG | 1 cut(s) | 1257 |
| Bst2UI | CCWGG | 2 cut(s) | 664, 1301 |
| Bst4CI | ACNGT | 6 cut(s) | 189, 557, 963, 991, 1339, 1494 |
| Bst6I | CTCTTC | 1 cut(s) | 435 |
| BstACI | GRCGYC | 1 cut(s) | 1237 |
| BstAUI | TGTACA | 1 cut(s) | 937 |
| BstC8I | GCNNGC | 5 cut(s) | 67, 95, 370, 1038, 1291 |
| BstDEI | CTNAG | 6 cut(s) | 342, 495, 718, 800, 1353, 1470 |
| BstF5I | GGATG | 8 cut(s) | 350, 370, 385, 505, 1189, 1252, 1253, 1426 |
| BstFNI | CGCG | 1 cut(s) | 65 |
| BstHHI | GCGC | 2 cut(s) | 374, 927 |
| BstKTI | GATC | 4 cut(s) | 574, 697, 733, 1153 |
| BstMAI | GTCTC | 3 cut(s) | 34, 352, 721 |
| BstMBI | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 380, 1310 |
| BstNI | CCWGG | 2 cut(s) | 664, 1301 |
| BstNSI | RCATGY | 2 cut(s) | 372, 1293 |
| BstSCI | CCNGG | 2 cut(s) | 662, 1299 |
| BstSFI | CTRYAG | 2 cut(s) | 210, 384 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstUI | CGCG | 1 cut(s) | 65 |
| BstV1I | GCAGC | 2 cut(s) | 1300, 1391 |
| BstX2I | RGATCY | 1 cut(s) | 730 |
| BstYI | RGATCY | 1 cut(s) | 730 |
| BsuRI | GGCC | 4 cut(s) | 390, 660, 1439, 1509 |
| BtsCI | GGATG | 8 cut(s) | 350, 370, 385, 505, 1189, 1252, 1253, 1426 |
| BtsI | GCAGTG | 2 cut(s) | 635, 758 |
| BtsIMutI | CAGTG | 7 cut(s) | 185, 275, 635, 758, 996, 1045, 1080 |
| Cac8I | GCNNGC | 5 cut(s) | 67, 95, 370, 1038, 1291 |
| CaiI | CAGNNNCTG | 2 cut(s) | 392, 656 |
| CfoI | GCGC | 2 cut(s) | 374, 927 |
| Cfr10I | RCCGGY | 1 cut(s) | 747 |
| Cfr13I | GGNCC | 3 cut(s) | 389, 659, 1508 |
| CseI | GACGC | 2 cut(s) | 716, 1245 |
| Csp6I | GTAC | 5 cut(s) | 638, 745, 838, 938, 1098 |
| CviAII | CATG | 7 cut(s) | 70, 369, 889, 1029, 1132, 1290, 1499 |
| CviQI | GTAC | 5 cut(s) | 638, 745, 838, 938, 1098 |
| DdeI | CTNAG | 6 cut(s) | 342, 495, 718, 800, 1353, 1470 |
| DpnI | GATC | 4 cut(s) | 573, 696, 732, 1152 |
| DpnII | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 713 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 713 |
| Eam1104I | CTCTTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 1 cut(s) | 435 |
| EciI | GGCGGA | 1 cut(s) | 343 |
| Ecl136II | GAGCTC | 2 cut(s) | 1202, 1352 |
| Eco24I | GRGCYC | 2 cut(s) | 1204, 1354 |
| Eco31I | GGTCTC | 1 cut(s) | 352 |
| Eco32I | GATATC | 1 cut(s) | 315 |
| Eco53kI | GAGCTC | 2 cut(s) | 1202, 1352 |
| Eco57I | CTGAAG | 4 cut(s) | 435, 746, 803, 1194 |
| EcoICRI | GAGCTC | 2 cut(s) | 1202, 1352 |
| EcoO109I | RGGNCCY | 1 cut(s) | 389 |
| EcoRI | GAATTC | 1 cut(s) | 251 |
| EcoRII | CCWGG | 2 cut(s) | 662, 1299 |
| EcoRV | GATATC | 1 cut(s) | 315 |
| EcoT22I | ATGCAT | 1 cut(s) | 370 |
| EcoT38I | GRGCYC | 2 cut(s) | 1204, 1354 |
| FaeI | CATG | 7 cut(s) | 73, 372, 892, 1032, 1135, 1293, 1502 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 801, 833 |
| FatI | CATG | 7 cut(s) | 69, 368, 888, 1028, 1131, 1289, 1498 |
| FauI | CCCGC | 2 cut(s) | 58, 960 |
| FbaI | TGATCA | 1 cut(s) | 571 |
| Fnu4HI | GCNGC | 2 cut(s) | 1314, 1405 |
| FokI | GGATG | 8 cut(s) | 337, 377, 392, 512, 1196, 1239, 1260, 1433 |
| FriOI | GRGCYC | 2 cut(s) | 1204, 1354 |
| Fsp4HI | GCNGC | 2 cut(s) | 1314, 1405 |
| FspBI | CTAG | 5 cut(s) | 8, 174, 1041, 1113, 1454 |
| GlaI | GCGC | 2 cut(s) | 373, 926 |
| GluI | GCNGC | 2 cut(s) | 1314, 1405 |
| GsuI | CTGGAG | 3 cut(s) | 633, 1218, 1368 |
| HaeIII | GGCC | 4 cut(s) | 390, 660, 1439, 1509 |
| HapII | CCGG | 2 cut(s) | 748, 1072 |
| HgaI | GACGC | 2 cut(s) | 716, 1245 |
| HhaI | GCGC | 2 cut(s) | 374, 927 |
| Hin1I | GRCGYC | 1 cut(s) | 1237 |
| Hin1II | CATG | 7 cut(s) | 73, 372, 892, 1032, 1135, 1293, 1502 |
| Hin6I | GCGC | 2 cut(s) | 372, 925 |
| HinP1I | GCGC | 2 cut(s) | 372, 925 |
| HindIII | AAGCTT | 1 cut(s) | 433 |
| HinfI | GANTC | 7 cut(s) | 443, 475, 1052, 1207, 1369, 1463, 1502 |
| HpaII | CCGG | 2 cut(s) | 748, 1072 |
| HphI | GGTGA | 4 cut(s) | 469, 569, 983, 1370 |
| Hpy166II | GTNNAC | 3 cut(s) | 185, 638, 1361 |
| Hpy188I | TCNGA | 9 cut(s) | 33, 343, 726, 735, 781, 822, 1008, 1206, 1374 |
| Hpy188III | TCNNGA | 7 cut(s) | 294, 377, 609, 677, 880, 920, 1432 |
| Hpy8I | GTNNAC | 3 cut(s) | 185, 638, 1361 |
| HpyCH4III | ACNGT | 6 cut(s) | 189, 557, 963, 991, 1339, 1494 |
| HpyCH4IV | ACGT | 1 cut(s) | 1397 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 380, 1310 |
| HpyF3I | CTNAG | 6 cut(s) | 342, 495, 718, 800, 1353, 1470 |
| HpySE526I | ACGT | 1 cut(s) | 1397 |
| Hsp92I | GRCGYC | 1 cut(s) | 1237 |
| Hsp92II | CATG | 7 cut(s) | 73, 372, 892, 1032, 1135, 1293, 1502 |
| HspAI | GCGC | 2 cut(s) | 372, 925 |
| Ksp22I | TGATCA | 1 cut(s) | 571 |
| Kzo9I | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| LmnI | GCTCC | 3 cut(s) | 197, 1199, 1349 |
| Lsp1109I | GCAGC | 2 cut(s) | 1300, 1391 |
| LweI | GCATC | 4 cut(s) | 355, 370, 577, 1213 |
| MaeI | CTAG | 5 cut(s) | 8, 174, 1041, 1113, 1454 |
| MaeII | ACGT | 1 cut(s) | 1397 |
| MaeIII | GTNAC | 3 cut(s) | 652, 854, 1494 |
| MalI | GATC | 4 cut(s) | 573, 696, 732, 1152 |
| MbiI | CCGCTC | 1 cut(s) | 804 |
| MboI | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| MboII | GAAGA | 5 cut(s) | 10, 324, 452, 809, 1187 |
| MflI | RGATCY | 1 cut(s) | 730 |
| MhlI | GDGCHC | 3 cut(s) | 187, 1204, 1354 |
| MluCI | AATT | 7 cut(s) | 177, 251, 288, 560, 672, 825, 946 |
| MlyI | GAGTC | 1 cut(s) | 452 |
| MnlI | CCTC | 6 cut(s) | 277, 337, 1211, 1336, 1370, 1438 |
| Mph1103I | ATGCAT | 1 cut(s) | 370 |
| MseI | TTAA | 5 cut(s) | 540, 671, 1019, 1326, 1515 |
| MspA1I | CMGCKG | 1 cut(s) | 455 |
| MspI | CCGG | 2 cut(s) | 748, 1072 |
| MspR9I | CCNGG | 2 cut(s) | 664, 1301 |
| Mva1269I | GAATGC | 1 cut(s) | 837 |
| MvaI | CCWGG | 2 cut(s) | 664, 1301 |
| MvnI | CGCG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 380, 1310 |
| NdeII | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| NlaIII | CATG | 7 cut(s) | 73, 372, 892, 1032, 1135, 1293, 1502 |
| NlaIV | GGNNCC | 4 cut(s) | 171, 199, 661, 1510 |
| NmeAIII | GCCGAG | 1 cut(s) | 382 |
| NsiI | ATGCAT | 1 cut(s) | 370 |
| NspI | RCATGY | 2 cut(s) | 372, 1293 |
| PaeI | GCATGC | 2 cut(s) | 372, 1293 |
| PctI | GAATGC | 1 cut(s) | 837 |
| PfeI | GAWTC | 6 cut(s) | 475, 1052, 1207, 1369, 1463, 1502 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 656 |
| PkrI | GCNGC | 2 cut(s) | 1315, 1406 |
| PleI | GAGTC | 1 cut(s) | 451 |
| PpsI | GAGTC | 1 cut(s) | 451 |
| Psp124BI | GAGCTC | 2 cut(s) | 1204, 1354 |
| Psp6I | CCWGG | 2 cut(s) | 662, 1299 |
| PspGI | CCWGG | 2 cut(s) | 662, 1299 |
| PspN4I | GGNNCC | 4 cut(s) | 171, 199, 661, 1510 |
| PspPI | GGNCC | 3 cut(s) | 389, 659, 1508 |
| PstI | CTGCAG | 1 cut(s) | 214 |
| PstNI | CAGNNNCTG | 2 cut(s) | 392, 656 |
| PsuI | RGATCY | 1 cut(s) | 730 |
| RsaI | GTAC | 5 cut(s) | 639, 746, 839, 939, 1099 |
| RsaNI | GTAC | 5 cut(s) | 638, 745, 838, 938, 1098 |
| SacI | GAGCTC | 2 cut(s) | 1204, 1354 |
| SaqAI | TTAA | 5 cut(s) | 540, 671, 1019, 1326, 1515 |
| SatI | GCNGC | 2 cut(s) | 1314, 1405 |
| Sau3AI | GATC | 4 cut(s) | 571, 694, 730, 1150 |
| Sau96I | GGNCC | 3 cut(s) | 389, 659, 1508 |
| SchI | GAGTC | 1 cut(s) | 452 |
| ScrFI | CCNGG | 2 cut(s) | 664, 1301 |
| SduI | GDGCHC | 3 cut(s) | 187, 1204, 1354 |
| SfaNI | GCATC | 4 cut(s) | 355, 370, 577, 1213 |
| SfcI | CTRYAG | 2 cut(s) | 210, 384 |
| SmlI | CTYRAG | 1 cut(s) | 37 |
| SmoI | CTYRAG | 1 cut(s) | 37 |
| SphI | GCATGC | 2 cut(s) | 372, 1293 |
| Sse9I | AATT | 7 cut(s) | 177, 251, 288, 560, 672, 825, 946 |
| SsiI | CCGC | 5 cut(s) | 65, 354, 455, 804, 967 |
| SspI | AATATT | 1 cut(s) | 913 |
| SspMI | CTAG | 5 cut(s) | 8, 174, 1041, 1113, 1454 |
| SstI | GAGCTC | 2 cut(s) | 1204, 1354 |
| StyD4I | CCNGG | 2 cut(s) | 662, 1299 |
| TaaI | ACNGT | 6 cut(s) | 189, 557, 963, 991, 1339, 1494 |
| TaiI | ACGT | 1 cut(s) | 1400 |
| TaqI | TCGA | 1 cut(s) | 1320 |
| TasI | AATT | 7 cut(s) | 177, 251, 288, 560, 672, 825, 946 |
| TatI | WGTACW | 1 cut(s) | 937 |
| TfiI | GAWTC | 6 cut(s) | 475, 1052, 1207, 1369, 1463, 1502 |
| Tru1I | TTAA | 5 cut(s) | 540, 671, 1019, 1326, 1515 |
| Tru9I | TTAA | 5 cut(s) | 540, 671, 1019, 1326, 1515 |
| TscAI | CASTG | 7 cut(s) | 192, 282, 635, 765, 996, 1052, 1087 |
| TseI | GCWGC | 2 cut(s) | 1313, 1404 |
| TspRI | CASTG | 7 cut(s) | 192, 282, 635, 765, 996, 1052, 1087 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 656 |
| VneI | GTGCAC | 1 cut(s) | 183 |
| XapI | RAATTY | 4 cut(s) | 251, 288, 560, 946 |
| XceI | RCATGY | 2 cut(s) | 372, 1293 |
| XspI | CTAG | 5 cut(s) | 8, 174, 1041, 1113, 1454 |
| Zsp2I | ATGCAT | 1 cut(s) | 370 |