Prupe.1G584700_v2.0.a1

Peptidogalycan biosysnthesis/recognition

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
47455313 .. 47461826
6514 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G584700.2

Sequence Viewer

Length: 1533 bp
ATGCAACTAGATGGTTTCTTCTCGGTTTATCAGAACTTGAGACACAGAAACAGCGAAGGGTTCGCGGGCATGGCAGTAGCAATGAGCTACTGCAAGCCTTCCCCGTTTCTGGGAAACTACCCAACTCATTTTCATTTGGGAAAATCTCAATCTGGGAAAGTTGTTCAGGCACCTAGAATTAGTGCACTGTTTTGGGGAGCCAAGAAGTCTGCAGAGCCAAAAGAAGTTGAGATAAATCTTTCACTTGGGGAATTCACTTTGACAGGTTCAGGCACACTGAAAGAGGGAATTTCAGGAGTGAAACCTGAAAAGATATCACTTTCAGTCGTTTCTTCAATCTCTGAGGTCTCATCCGCCGAGTGGGATGCATGCGCTCTGGATGCTACAGGCCCTGAAAAATATAACCCATTTCTTACTTATGCTTTTCTTTCAAGCTTGGAAGAGTCAGCTTCAGCGGTGAAGGAAACAGGGTGGATTCCACGCCATATCATTGCTAAGGATGAAAGTGAAAGTATTTTAGGTGTTGTTCCACTCTATCTTAAAAGTCATTCCTACGGTGAATTTGTTTTTGATCATTCTTGGGCTGATGCGTATTATAGTTTTGGGTCAAGATATTACCCAAAGTTGCAGTGCTGTGTACCTTTTACTCCAGTAACTGGCCCCAGGATTTTAATTCGTGATACTTCATTTAGAGATCAAGTTTTTGACGCTTTAGTCTCAGCTCTGAAGGATCTGACTGCCAAGTACCGGCTTTCATCACTGCACATTACCTTCCCATCTGAAAATGAATGGAACAAACTGAGCGGAAAAGGTTTTCTTCAGAGAATTGGAATGCAGTACCATTGGAAAAATCGTAACTATAAAAGTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAGATTGTACAGCAGAATTTGACTATGAAACGGTTGCGGGGTGATGAAATAAAGAGAACAGTGGGAACAATAGGTCTGACCACTTCCTTAATGATGTCATGTTGGCAGGCTAGACACTGGGATTCCTTCTATAACTTCTACCGGAACACCACTGATAACAAGTGGGGTACTCCATACCTGACTAGGGATTTCTTTCACAACATGGGGTCAAAGATGGGAGATCAGGTATTACTTGTTGTTGCTGAAGAAGGGGATGAGCTTGTTGCTGGAGCTCTGAATCTTATAGGAGGAGATGCGTTATTTGGACGCCTATGGGGATGTCATCCACGAGCTTACTATCCAAGTTTGCATTTTGAAGCATGCTATTACCAGGCAATAGAAGCTGCAATCGAACTTAATCTAAACACAGTAGAGGCTGGAGCTCAGGGTGAACATAAGATTCAGAGAGGTTATATGCCTGTGAGAACGTATAGCTGCCATTACCTGATGGATGAAGGTTTCAGGAAGGCCATAGAGGGCTTTCTAGTGCGTGAATCAACTCAGGTTGAGCTTGTTATGAAACTGTTACATGATTCTGGCCCCTTTAAGGAAGGTATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

57.83

Weight (kDa)

8.24

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 804
AccII CGCG 1 cut(s) 65
AciI CCGC 5 cut(s) 65, 354, 455, 804, 967
AclWI GGATC 1 cut(s) 738
AcsI RAATTY 4 cut(s) 251, 288, 560, 946
AcuI CTGAAG 4 cut(s) 435, 746, 803, 1194
AcyI GRCGYC 1 cut(s) 1237
AfaI GTAC 5 cut(s) 639, 746, 839, 939, 1099
AfiI CCNNNNNNNGG 7 cut(s) 109, 110, 360, 656, 747, 1114, 1516
AgsI TTSAA 3 cut(s) 336, 432, 1286
AjnI CCWGG 2 cut(s) 662, 1299
Alw21I GWGCWC 3 cut(s) 187, 1204, 1354
Alw26I GTCTC 3 cut(s) 34, 352, 721
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 1 cut(s) 738
AlwNI CAGNNNCTG 2 cut(s) 392, 656
AoxI GGCC 4 cut(s) 388, 658, 1437, 1507
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 1313, 1404
ApoI RAATTY 4 cut(s) 251, 288, 560, 946
AspLEI GCGC 2 cut(s) 374, 927
AspS9I GGNCC 3 cut(s) 389, 659, 1508
AsuHPI GGTGA 4 cut(s) 469, 569, 983, 1370
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 2 cut(s) 1204, 1354
BauI CACGAG 1 cut(s) 1257
Bbv12I GWGCWC 3 cut(s) 187, 1204, 1354
BbvI GCAGC 2 cut(s) 1300, 1391
BccI CCATC 5 cut(s) 5, 784, 877, 1138, 1411
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 2 cut(s) 664, 1301
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 3 cut(s) 34, 352, 721
BfaI CTAG 5 cut(s) 8, 174, 1041, 1113, 1454
BfmI CTRYAG 2 cut(s) 210, 384
BisI GCNGC 2 cut(s) 1314, 1405
BlsI GCNGC 2 cut(s) 1315, 1406
Bme1390I CCNGG 2 cut(s) 664, 1301
BmgT120I GGNCC 3 cut(s) 389, 659, 1508
BmiI GGNNCC 4 cut(s) 171, 199, 661, 1510
BmrFI CCNGG 2 cut(s) 664, 1301
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 4 cut(s) 355, 370, 577, 1213
BmuI ACTGGG 1 cut(s) 1057
BpmI CTGGAG 3 cut(s) 633, 1218, 1368
Bpu10I CCTNAGC 2 cut(s) 495, 1353
BpuEI CTTGAG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 1237
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 662
BsaWI WCCGGW 1 cut(s) 1071
BsaXI ACNNNNNCTCC 2 cut(s) 1140, 1170
Bsc4I CCNNNNNNNGG 7 cut(s) 109, 110, 360, 656, 747, 1114, 1516
Bse118I RCCGGY 1 cut(s) 747
Bse1I ACTGG 3 cut(s) 650, 661, 1052
Bse3DI GCAATG 2 cut(s) 87, 489
BseBI CCWGG 2 cut(s) 664, 1301
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 8 cut(s) 350, 370, 385, 505, 1189, 1252, 1253, 1426
BseLI CCNNNNNNNGG 7 cut(s) 109, 110, 360, 656, 747, 1114, 1516
BseMI GCAATG 2 cut(s) 87, 489
BseMII CTCAG 5 cut(s) 333, 732, 791, 1367, 1484
BseNI ACTGG 3 cut(s) 650, 661, 1052
BseRI GAGGAG 1 cut(s) 1233
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 2 cut(s) 1300, 1391
BsgI GTGCAG 1 cut(s) 746
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 4 cut(s) 390, 660, 1439, 1509
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 3 cut(s) 187, 1204, 1354
BsiSI CCGG 2 cut(s) 748, 1072
BslI CCNNNNNNNGG 7 cut(s) 109, 110, 360, 656, 747, 1114, 1516
BsmAI GTCTC 3 cut(s) 34, 352, 721
BsmI GAATGC 1 cut(s) 837
BsnI GGCC 4 cut(s) 390, 660, 1439, 1509
Bso31I GGTCTC 1 cut(s) 352
Bsp1286I GDGCHC 3 cut(s) 187, 1204, 1354
Bsp1407I TGTACA 1 cut(s) 937
Bsp143I GATC 4 cut(s) 571, 694, 730, 1150
BspACI CCGC 5 cut(s) 65, 354, 455, 804, 967
BspANI GGCC 4 cut(s) 390, 660, 1439, 1509
BspCNI CTCAG 5 cut(s) 334, 731, 792, 1366, 1483
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 4 cut(s) 171, 199, 661, 1510
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 352
BsrBI CCGCTC 1 cut(s) 804
BsrDI GCAATG 2 cut(s) 87, 489
BsrFI RCCGGY 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 3 cut(s) 650, 661, 1052
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 4 cut(s) 571, 694, 730, 1150
BssNI GRCGYC 1 cut(s) 1237
BssSI CACGAG 1 cut(s) 1257
Bst2BI CACGAG 1 cut(s) 1257
Bst2UI CCWGG 2 cut(s) 664, 1301
Bst4CI ACNGT 6 cut(s) 189, 557, 963, 991, 1339, 1494
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 1237
BstAUI TGTACA 1 cut(s) 937
BstC8I GCNNGC 5 cut(s) 67, 95, 370, 1038, 1291
BstDEI CTNAG 6 cut(s) 342, 495, 718, 800, 1353, 1470
BstF5I GGATG 8 cut(s) 350, 370, 385, 505, 1189, 1252, 1253, 1426
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 2 cut(s) 374, 927
BstKTI GATC 4 cut(s) 574, 697, 733, 1153
BstMAI GTCTC 3 cut(s) 34, 352, 721
BstMBI GATC 4 cut(s) 571, 694, 730, 1150
BstMWI GCNNNNNNNGC 3 cut(s) 71, 380, 1310
BstNI CCWGG 2 cut(s) 664, 1301
BstNSI RCATGY 2 cut(s) 372, 1293
BstSCI CCNGG 2 cut(s) 662, 1299
BstSFI CTRYAG 2 cut(s) 210, 384
BstSLI GKGCMC 1 cut(s) 187
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 1300, 1391
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuRI GGCC 4 cut(s) 390, 660, 1439, 1509
BtsCI GGATG 8 cut(s) 350, 370, 385, 505, 1189, 1252, 1253, 1426
BtsI GCAGTG 2 cut(s) 635, 758
BtsIMutI CAGTG 7 cut(s) 185, 275, 635, 758, 996, 1045, 1080
Cac8I GCNNGC 5 cut(s) 67, 95, 370, 1038, 1291
CaiI CAGNNNCTG 2 cut(s) 392, 656
CfoI GCGC 2 cut(s) 374, 927
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 3 cut(s) 389, 659, 1508
CseI GACGC 2 cut(s) 716, 1245
Csp6I GTAC 5 cut(s) 638, 745, 838, 938, 1098
CviAII CATG 7 cut(s) 70, 369, 889, 1029, 1132, 1290, 1499
CviQI GTAC 5 cut(s) 638, 745, 838, 938, 1098
DdeI CTNAG 6 cut(s) 342, 495, 718, 800, 1353, 1470
DpnI GATC 4 cut(s) 573, 696, 732, 1152
DpnII GATC 4 cut(s) 571, 694, 730, 1150
DrdI GACNNNNNNGTC 1 cut(s) 713
DseDI GACNNNNNNGTC 1 cut(s) 713
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 343
Ecl136II GAGCTC 2 cut(s) 1202, 1352
Eco24I GRGCYC 2 cut(s) 1204, 1354
Eco31I GGTCTC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 315
Eco53kI GAGCTC 2 cut(s) 1202, 1352
Eco57I CTGAAG 4 cut(s) 435, 746, 803, 1194
EcoICRI GAGCTC 2 cut(s) 1202, 1352
EcoO109I RGGNCCY 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 662, 1299
EcoRV GATATC 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 2 cut(s) 1204, 1354
FaeI CATG 7 cut(s) 73, 372, 892, 1032, 1135, 1293, 1502
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FatI CATG 7 cut(s) 69, 368, 888, 1028, 1131, 1289, 1498
FauI CCCGC 2 cut(s) 58, 960
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 2 cut(s) 1314, 1405
FokI GGATG 8 cut(s) 337, 377, 392, 512, 1196, 1239, 1260, 1433
FriOI GRGCYC 2 cut(s) 1204, 1354
Fsp4HI GCNGC 2 cut(s) 1314, 1405
FspBI CTAG 5 cut(s) 8, 174, 1041, 1113, 1454
GlaI GCGC 2 cut(s) 373, 926
GluI GCNGC 2 cut(s) 1314, 1405
GsuI CTGGAG 3 cut(s) 633, 1218, 1368
HaeIII GGCC 4 cut(s) 390, 660, 1439, 1509
HapII CCGG 2 cut(s) 748, 1072
HgaI GACGC 2 cut(s) 716, 1245
HhaI GCGC 2 cut(s) 374, 927
Hin1I GRCGYC 1 cut(s) 1237
Hin1II CATG 7 cut(s) 73, 372, 892, 1032, 1135, 1293, 1502
Hin6I GCGC 2 cut(s) 372, 925
HinP1I GCGC 2 cut(s) 372, 925
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 7 cut(s) 443, 475, 1052, 1207, 1369, 1463, 1502
HpaII CCGG 2 cut(s) 748, 1072
HphI GGTGA 4 cut(s) 469, 569, 983, 1370
Hpy166II GTNNAC 3 cut(s) 185, 638, 1361
Hpy188I TCNGA 9 cut(s) 33, 343, 726, 735, 781, 822, 1008, 1206, 1374
Hpy188III TCNNGA 7 cut(s) 294, 377, 609, 677, 880, 920, 1432
Hpy8I GTNNAC 3 cut(s) 185, 638, 1361
HpyCH4III ACNGT 6 cut(s) 189, 557, 963, 991, 1339, 1494
HpyCH4IV ACGT 1 cut(s) 1397
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 380, 1310
HpyF3I CTNAG 6 cut(s) 342, 495, 718, 800, 1353, 1470
HpySE526I ACGT 1 cut(s) 1397
Hsp92I GRCGYC 1 cut(s) 1237
Hsp92II CATG 7 cut(s) 73, 372, 892, 1032, 1135, 1293, 1502
HspAI GCGC 2 cut(s) 372, 925
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 571, 694, 730, 1150
LmnI GCTCC 3 cut(s) 197, 1199, 1349
Lsp1109I GCAGC 2 cut(s) 1300, 1391
LweI GCATC 4 cut(s) 355, 370, 577, 1213
MaeI CTAG 5 cut(s) 8, 174, 1041, 1113, 1454
MaeII ACGT 1 cut(s) 1397
MaeIII GTNAC 3 cut(s) 652, 854, 1494
MalI GATC 4 cut(s) 573, 696, 732, 1152
MbiI CCGCTC 1 cut(s) 804
MboI GATC 4 cut(s) 571, 694, 730, 1150
MboII GAAGA 5 cut(s) 10, 324, 452, 809, 1187
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 3 cut(s) 187, 1204, 1354
MluCI AATT 7 cut(s) 177, 251, 288, 560, 672, 825, 946
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 6 cut(s) 277, 337, 1211, 1336, 1370, 1438
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 5 cut(s) 540, 671, 1019, 1326, 1515
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 2 cut(s) 748, 1072
MspR9I CCNGG 2 cut(s) 664, 1301
Mva1269I GAATGC 1 cut(s) 837
MvaI CCWGG 2 cut(s) 664, 1301
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 3 cut(s) 71, 380, 1310
NdeII GATC 4 cut(s) 571, 694, 730, 1150
NlaIII CATG 7 cut(s) 73, 372, 892, 1032, 1135, 1293, 1502
NlaIV GGNNCC 4 cut(s) 171, 199, 661, 1510
NmeAIII GCCGAG 1 cut(s) 382
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 2 cut(s) 372, 1293
PaeI GCATGC 2 cut(s) 372, 1293
PctI GAATGC 1 cut(s) 837
PfeI GAWTC 6 cut(s) 475, 1052, 1207, 1369, 1463, 1502
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 2 cut(s) 1315, 1406
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Psp124BI GAGCTC 2 cut(s) 1204, 1354
Psp6I CCWGG 2 cut(s) 662, 1299
PspGI CCWGG 2 cut(s) 662, 1299
PspN4I GGNNCC 4 cut(s) 171, 199, 661, 1510
PspPI GGNCC 3 cut(s) 389, 659, 1508
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 2 cut(s) 392, 656
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 5 cut(s) 639, 746, 839, 939, 1099
RsaNI GTAC 5 cut(s) 638, 745, 838, 938, 1098
SacI GAGCTC 2 cut(s) 1204, 1354
SaqAI TTAA 5 cut(s) 540, 671, 1019, 1326, 1515
SatI GCNGC 2 cut(s) 1314, 1405
Sau3AI GATC 4 cut(s) 571, 694, 730, 1150
Sau96I GGNCC 3 cut(s) 389, 659, 1508
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 2 cut(s) 664, 1301
SduI GDGCHC 3 cut(s) 187, 1204, 1354
SfaNI GCATC 4 cut(s) 355, 370, 577, 1213
SfcI CTRYAG 2 cut(s) 210, 384
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SphI GCATGC 2 cut(s) 372, 1293
Sse9I AATT 7 cut(s) 177, 251, 288, 560, 672, 825, 946
SsiI CCGC 5 cut(s) 65, 354, 455, 804, 967
SspI AATATT 1 cut(s) 913
SspMI CTAG 5 cut(s) 8, 174, 1041, 1113, 1454
SstI GAGCTC 2 cut(s) 1204, 1354
StyD4I CCNGG 2 cut(s) 662, 1299
TaaI ACNGT 6 cut(s) 189, 557, 963, 991, 1339, 1494
TaiI ACGT 1 cut(s) 1400
TaqI TCGA 1 cut(s) 1320
TasI AATT 7 cut(s) 177, 251, 288, 560, 672, 825, 946
TatI WGTACW 1 cut(s) 937
TfiI GAWTC 6 cut(s) 475, 1052, 1207, 1369, 1463, 1502
Tru1I TTAA 5 cut(s) 540, 671, 1019, 1326, 1515
Tru9I TTAA 5 cut(s) 540, 671, 1019, 1326, 1515
TscAI CASTG 7 cut(s) 192, 282, 635, 765, 996, 1052, 1087
TseI GCWGC 2 cut(s) 1313, 1404
TspRI CASTG 7 cut(s) 192, 282, 635, 765, 996, 1052, 1087
Van91I CCANNNNNTGG 1 cut(s) 656
VneI GTGCAC 1 cut(s) 183
XapI RAATTY 4 cut(s) 251, 288, 560, 946
XceI RCATGY 2 cut(s) 372, 1293
XspI CTAG 5 cut(s) 8, 174, 1041, 1113, 1454
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.