RchiOBHm_Chr7g0220181

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006734
Physical Location & Seq
Reverse (-)
38985740 .. 38993154
7415 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19708

Sequence Viewer

Length: 1104 bp
ATGGATGCTACCGGCCCTGATAAATATAACCCATTTCTTACTCATGCTTTTCTTTCAAGCTTGGAACTGTCGGGTTCTGCAGTCAAGGAAACAGGATGGATTCCAAGCCATATCGTTGCCAAGGATGCAAATGAAAATACTTTGGGTGTTGTTCCACTTTATCTTAAAAGTCATTCTTATGGTGAATTTGTTTTTGATCATTCCTGGGCTGATGCACATTATAGTTTTGGGTCAAGATATTATCCAAAGTTACAATGTTGTGTCCCTTTTACTCCAGTAACTGGCCCAAGGATTTTAGTACGGAATACCTTGTTCAAAGATCAAGTTTTTGACATCATAGTTTCTGCTCTTAAGGATCTGACGGCCAAGTACCAGATTTCATCACTGCACATTACCTTCCCATCTGAACAGGAGTGGGACAAACTGAGTGAAAAGGGATTTCTACAAAGAATTGGAATGCAGTACCATTGGAAAAATCGTAATTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGGAAGAAGATTTTGCAGCAGAATTTGACTATGAAACGGTTGCAAGGCGATGAAATAAAGGCTAGACACTGGGATGCCTTCTATAACTTCTACCGCAACACAACTGACAACAAGTGGGGTACCCCATACCTGACTAGGGAGTTCTTTCACAACATAGGGTCAAAGATGGGAGATCAGGTACTCCTTGTTGTTGCTGAAGAGGGGGATGAGCTTGTTGCTGGAGCTCTTAATCTTATTGGAGGAGACACGTTATTTGGACGCCTATGGGGATGCCATCCCCGAGCTTATTATCCAAGTTTGCATTTTGAAGCATGCTATTACCAGGCAATAGAAGCTGCAATCGAACTTGATTTAAGCACAGTGGAGGCAGGAGCGCAGGGTGAGCATAAGATTCAGAGGGGTTATATGCCTGTGGCCACGTATAGCTGCCATTACCTGACTAATCAAAGTTTCAGGAAGGCCATAGAGGACTTTCTTGTGCGTGAATCAACTCAGGTTAAGCTTGTGATGAAACTACTGCATGATTCTGGTCCTTTTAAGGAAGGTGTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

367

Amino Acids

42.31

Weight (kDa)

7.7

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FemAB_like PF04339 8 - 364 1e-150 Peptidogalycan biosysnthesis/recognition
Acetyltransf_6 PF13480 175 - 310 3.1e-13 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
Acc65I GGTACC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 668
AccB7I CCANNNNNTGG 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 550
AciI CCGC 2 cut(s) 550, 643
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 2 cut(s) 363, 963
AcsI RAATTY 3 cut(s) 185, 490, 571
AcuI CTGAAG 1 cut(s) 765
AcyI GRCGYC 1 cut(s) 808
AfaI GTAC 6 cut(s) 300, 371, 464, 670, 729, 1098
AfiI CCNNNNNNNGG 2 cut(s) 281, 685
AflII CTTAAG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 3 cut(s) 57, 316, 857
AjnI CCWGG 2 cut(s) 203, 870
AluBI AGCT 7 cut(s) 60, 760, 773, 833, 884, 975, 1051
AluI AGCT 7 cut(s) 60, 760, 773, 833, 884, 975, 1051
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 786
AlwI GGATC 1 cut(s) 363
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 828
AoxI GGCC 5 cut(s) 13, 283, 363, 963, 1008
ApeKI GCWGC 3 cut(s) 565, 884, 975
ApoI RAATTY 3 cut(s) 185, 490, 571
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
Asp718I GGTACC 1 cut(s) 668
AspLEI GCGC 1 cut(s) 925
AspS9I GGNCC 3 cut(s) 14, 284, 1079
AsuHPI GGTGA 2 cut(s) 194, 941
AvaI CYCGRG 1 cut(s) 828
AvaII GGWCC 1 cut(s) 1079
BalI TGGCCA 1 cut(s) 965
BanI GGYRCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 775
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 3 cut(s) 577, 871, 962
BccI CCATC 5 cut(s) 90, 409, 502, 709, 831
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 2 cut(s) 205, 872
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 786
BfaI CTAG 2 cut(s) 612, 684
BfmI CTRYAG 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 350
BisI GCNGC 3 cut(s) 566, 885, 976
BlsI GCNGC 3 cut(s) 567, 886, 977
Bme1390I CCNGG 2 cut(s) 205, 872
Bme18I GGWCC 1 cut(s) 1079
BmeT110I CYCGRG 1 cut(s) 828
BmgT120I GGNCC 3 cut(s) 14, 284, 1079
BmiI GGNNCC 1 cut(s) 670
BmrFI CCNGG 2 cut(s) 205, 872
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 4 cut(s) 115, 202, 613, 809
BmuI ACTGGG 1 cut(s) 628
BpmI CTGGAG 2 cut(s) 258, 789
BsaAI YACGTR 1 cut(s) 969
BsaHI GRCGYC 1 cut(s) 808
BsaJI CCNNGG 3 cut(s) 120, 204, 287
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 685
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 3 cut(s) 275, 286, 623
BseBI CCWGG 2 cut(s) 205, 872
BseDI CCNNGG 3 cut(s) 120, 204, 287
BseGI GGATG 7 cut(s) 10, 101, 130, 628, 760, 823, 824
BseLI CCNNNNNNNGG 2 cut(s) 281, 685
BseMII CTCAG 2 cut(s) 416, 1055
BseNI ACTGG 3 cut(s) 275, 286, 623
BseRI GAGGAG 1 cut(s) 804
BseXI GCAGC 3 cut(s) 577, 871, 962
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 5 cut(s) 15, 285, 365, 965, 1010
BshNI GGYRCC 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 828
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 248, 431
BslI CCNNNNNNNGG 2 cut(s) 281, 685
BsmAI GTCTC 1 cut(s) 786
BsmFI GGGAC 2 cut(s) 248, 431
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 5 cut(s) 15, 285, 365, 965, 1010
BsoBI CYCGRG 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 775
Bsp1407I TGTACA 1 cut(s) 1096
Bsp143I GATC 4 cut(s) 196, 319, 355, 721
BspACI CCGC 2 cut(s) 550, 643
BspANI GGCC 5 cut(s) 15, 285, 365, 965, 1010
BspCNI CTCAG 2 cut(s) 417, 1054
BspLI GGNNCC 1 cut(s) 670
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 668
BspTI CTTAAG 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 1096
BsrI ACTGG 3 cut(s) 275, 286, 623
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 120, 204, 287
BssMI GATC 4 cut(s) 196, 319, 355, 721
BssNI GRCGYC 1 cut(s) 808
BssT1I CCWWGG 2 cut(s) 120, 287
Bst2UI CCWGG 2 cut(s) 205, 872
Bst4CI ACNGT 3 cut(s) 69, 588, 910
Bst6I CTCTTC 1 cut(s) 741
BstACI GRCGYC 1 cut(s) 808
BstAFI CTTAAG 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 1096
BstBAI YACGTR 1 cut(s) 969
BstC8I GCNNGC 1 cut(s) 862
BstDEI CTNAG 2 cut(s) 425, 1041
BstF5I GGATG 7 cut(s) 10, 101, 130, 628, 760, 823, 824
BstHHI GCGC 1 cut(s) 925
BstKTI GATC 4 cut(s) 199, 322, 358, 724
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 4 cut(s) 196, 319, 355, 721
BstMWI GCNNNNNNNGC 3 cut(s) 125, 881, 931
BstNI CCWGG 2 cut(s) 205, 872
BstNSI RCATGY 1 cut(s) 864
BstSCI CCNGG 2 cut(s) 203, 870
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 577, 871, 962
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 5 cut(s) 15, 285, 365, 965, 1010
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 7 cut(s) 10, 101, 130, 628, 760, 823, 824
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 3 cut(s) 383, 616, 915
Cac8I GCNNGC 1 cut(s) 862
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 1 cut(s) 925
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 14, 284, 1079
CseI GACGC 1 cut(s) 816
Csp6I GTAC 6 cut(s) 299, 370, 463, 669, 728, 1097
CviAII CATG 4 cut(s) 44, 514, 861, 1070
CviQI GTAC 6 cut(s) 299, 370, 463, 669, 728, 1097
DdeI CTNAG 2 cut(s) 425, 1041
DpnI GATC 4 cut(s) 198, 321, 357, 723
DpnII GATC 4 cut(s) 196, 319, 355, 721
EaeI YGGCCR 2 cut(s) 363, 963
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
Ecl136II GAGCTC 1 cut(s) 773
Eco130I CCWWGG 2 cut(s) 120, 287
Eco24I GRGCYC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 1079
Eco53kI GAGCTC 1 cut(s) 773
Eco57I CTGAAG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 828
EcoICRI GAGCTC 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 203, 870
EcoT14I CCWWGG 2 cut(s) 120, 287
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 2 cut(s) 120, 287
FaeI CATG 4 cut(s) 47, 517, 864, 1073
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FaqI GGGAC 2 cut(s) 248, 431
FatI CATG 4 cut(s) 43, 513, 860, 1069
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 566, 885, 976
FokI GGATG 7 cut(s) 17, 108, 137, 635, 767, 810, 831
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 3 cut(s) 566, 885, 976
FspBI CTAG 2 cut(s) 612, 684
GlaI GCGC 1 cut(s) 924
GluI GCNGC 3 cut(s) 566, 885, 976
GsuI CTGGAG 2 cut(s) 258, 789
HaeIII GGCC 5 cut(s) 15, 285, 365, 965, 1010
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 816
HhaI GCGC 1 cut(s) 925
Hin1I GRCGYC 1 cut(s) 808
Hin1II CATG 4 cut(s) 47, 517, 864, 1073
Hin6I GCGC 1 cut(s) 923
HinP1I GCGC 1 cut(s) 923
HindIII AAGCTT 2 cut(s) 58, 1049
HinfI GANTC 4 cut(s) 100, 940, 1034, 1073
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 194, 941
Hpy166II GTNNAC 2 cut(s) 1097, 1099
Hpy188I TCNGA 3 cut(s) 360, 406, 945
Hpy188III TCNNGA 4 cut(s) 234, 505, 545, 1003
Hpy8I GTNNAC 2 cut(s) 1097, 1099
HpyAV CCTTC 4 cut(s) 406, 637, 1000, 1085
HpyCH4III ACNGT 3 cut(s) 69, 588, 910
HpyCH4IV ACGT 2 cut(s) 797, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 881, 931
HpyF3I CTNAG 2 cut(s) 425, 1041
HpySE526I ACGT 2 cut(s) 797, 968
Hsp92I GRCGYC 1 cut(s) 808
Hsp92II CATG 4 cut(s) 47, 517, 864, 1073
HspAI GCGC 1 cut(s) 923
KpnI GGTACC 1 cut(s) 672
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 4 cut(s) 196, 319, 355, 721
LmnI GCTCC 2 cut(s) 770, 920
Lsp1109I GCAGC 3 cut(s) 577, 871, 962
LweI GCATC 4 cut(s) 115, 202, 613, 809
MaeI CTAG 2 cut(s) 612, 684
MaeII ACGT 2 cut(s) 797, 968
MaeIII GTNAC 2 cut(s) 249, 277
MalI GATC 4 cut(s) 198, 321, 357, 723
MbiI CCGCTC 1 cut(s) 550
MboI GATC 4 cut(s) 196, 319, 355, 721
MboII GAAGA 3 cut(s) 565, 568, 758
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 775
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 5 cut(s) 185, 450, 481, 490, 571
MluNI TGGCCA 1 cut(s) 965
MnlI CCTC 5 cut(s) 742, 782, 907, 939, 1009
Mox20I TGGCCA 1 cut(s) 965
MscI TGGCCA 1 cut(s) 965
MseI TTAA 6 cut(s) 165, 351, 777, 902, 1047, 1086
MslI CAYNNNNRTG 2 cut(s) 177, 621
Msp20I TGGCCA 1 cut(s) 965
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 205, 872
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 2 cut(s) 205, 872
MwoI GCNNNNNNNGC 3 cut(s) 125, 881, 931
NdeII GATC 4 cut(s) 196, 319, 355, 721
NlaIII CATG 4 cut(s) 47, 517, 864, 1073
NlaIV GGNNCC 1 cut(s) 670
NspI RCATGY 1 cut(s) 864
PaeI GCATGC 1 cut(s) 864
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 4 cut(s) 100, 940, 1034, 1073
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 3 cut(s) 567, 886, 977
Ppu21I YACGTR 1 cut(s) 969
PsiI TTATAA 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 775
Psp6I CCWGG 2 cut(s) 203, 870
PspGI CCWGG 2 cut(s) 203, 870
PspN4I GGNNCC 1 cut(s) 670
PspPI GGNCC 3 cut(s) 14, 284, 1079
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 6 cut(s) 300, 371, 464, 670, 729, 1098
RsaNI GTAC 6 cut(s) 299, 370, 463, 669, 728, 1097
RseI CAYNNNNRTG 2 cut(s) 177, 621
SacI GAGCTC 1 cut(s) 775
SaqAI TTAA 6 cut(s) 165, 351, 777, 902, 1047, 1086
SatI GCNGC 3 cut(s) 566, 885, 976
Sau3AI GATC 4 cut(s) 196, 319, 355, 721
Sau96I GGNCC 3 cut(s) 14, 284, 1079
ScrFI CCNGG 2 cut(s) 205, 872
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 4 cut(s) 115, 202, 613, 809
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 1079
SmiMI CAYNNNNRTG 2 cut(s) 177, 621
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 864
Sse9I AATT 5 cut(s) 185, 450, 481, 490, 571
SsiI CCGC 2 cut(s) 550, 643
SspI AATATT 1 cut(s) 538
SspMI CTAG 2 cut(s) 612, 684
SstI GAGCTC 1 cut(s) 775
StyD4I CCNGG 2 cut(s) 203, 870
StyI CCWWGG 2 cut(s) 120, 287
TaaI ACNGT 3 cut(s) 69, 588, 910
TaiI ACGT 2 cut(s) 800, 971
TaqI TCGA 1 cut(s) 891
TasI AATT 5 cut(s) 185, 450, 481, 490, 571
TatI WGTACW 1 cut(s) 1096
TfiI GAWTC 4 cut(s) 100, 940, 1034, 1073
Tru1I TTAA 6 cut(s) 165, 351, 777, 902, 1047, 1086
Tru9I TTAA 6 cut(s) 165, 351, 777, 902, 1047, 1086
TscAI CASTG 3 cut(s) 390, 623, 915
TseI GCWGC 3 cut(s) 565, 884, 975
TspDTI ATGAA 6 cut(s) 147, 369, 530, 596, 615, 1073
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 3 cut(s) 390, 623, 915
Van91I CCANNNNNTGG 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 1079
XapI RAATTY 3 cut(s) 185, 490, 571
XceI RCATGY 1 cut(s) 864
XspI CTAG 2 cut(s) 612, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.