Rmu_sc0006361.1_g000011

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006361.1
OG0006734
Physical Location & Seq
Forward (+)
58264 .. 61264
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006361.1_g000011.1.cds

Sequence Viewer

Length: 714 bp
atgcgtcagttgaattgggattctaatccaccttcctctttttatggtttgttgttatcagatgcttcccatacctctacccaggcacttgttctgtctggttttgatgagttcttgatggacatgaagcaaagtaaaaggaaaaatattcgtcaagagcggaagaagattttgcagcagaatttgactatgaaacggttgcaaggcgatgaaataaaggctagacactgggatgccttctataacttctaccgcaacaccactgacaacaagtggggtaccccgtacctgactagggaattctttcacaacatagggtcaaagatgggagatcaggtactccttgttgttgctgaagagggggatgagcttgttgctggagctcttaatcttattggaggagacacgttatttggacgcctatggggatgccatccccgagcttattatccaagtttgcattttgaagcatgctattaccaggcaatagaagctgcaatcgaacttgatttaagcacagtggaggcaggagcgcagggtgagcataagattcagaggggttatatgcctgtggccacgtatagctgccattacctgactaatcaaagtttcaggaaggccatagaggactttcttgtgcgtgaatcaactcaggttaagcttgtgatgaaactactgcatgattctggtccttttaaggaaggtgtacactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

237

Amino Acids

27.21

Weight (kDa)

6.75

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 160
AciI CCGC 2 cut(s) 160, 253
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 2 cut(s) 181, 299
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 418
AfaI GTAC 4 cut(s) 280, 287, 339, 708
AfiI CCNNNNNNNGG 1 cut(s) 295
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 2 cut(s) 13, 467
AjnI CCWGG 2 cut(s) 81, 480
AluBI AGCT 6 cut(s) 370, 383, 443, 494, 585, 661
AluI AGCT 6 cut(s) 370, 383, 443, 494, 585, 661
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 396
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 2 cut(s) 573, 618
ApeKI GCWGC 3 cut(s) 175, 494, 585
ApoI RAATTY 2 cut(s) 181, 299
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 1 cut(s) 303
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 535
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 689
BalI TGGCCA 1 cut(s) 575
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 187, 481, 572
BccI CCATC 3 cut(s) 112, 319, 441
BciT130I CCWGG 2 cut(s) 83, 482
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 2 cut(s) 222, 294
BisI GCNGC 3 cut(s) 176, 495, 586
BlsI GCNGC 3 cut(s) 177, 496, 587
Bme1390I CCNGG 2 cut(s) 83, 482
Bme18I GGWCC 1 cut(s) 689
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 2 cut(s) 83, 482
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 3 cut(s) 52, 223, 419
BmuI ACTGGG 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 2 cut(s) 83, 482
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 4 cut(s) 238, 370, 433, 434
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 3 cut(s) 187, 481, 572
BshFI GGCC 2 cut(s) 575, 620
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 2 cut(s) 575, 620
BsoBI CYCGRG 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 706
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 160, 253
BspANI GGCC 2 cut(s) 575, 620
BspCNI CTCAG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 706
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 83, 482
Bst4CI ACNGT 2 cut(s) 198, 520
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 418
BstAUI TGTACA 1 cut(s) 706
BstBAI YACGTR 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 1 cut(s) 651
BstF5I GGATG 4 cut(s) 238, 370, 433, 434
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 491, 541
BstNI CCWGG 2 cut(s) 83, 482
BstNSI RCATGY 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 81, 480
BstV1I GCAGC 3 cut(s) 187, 481, 572
BsuRI GGCC 2 cut(s) 575, 620
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 4 cut(s) 238, 370, 433, 434
BtsIMutI CAGTG 3 cut(s) 226, 261, 525
Cac8I GCNNGC 1 cut(s) 472
CfoI GCGC 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 689
CseI GACGC 1 cut(s) 426
Csp6I GTAC 4 cut(s) 279, 286, 338, 707
CviAII CATG 3 cut(s) 124, 471, 680
CviJI RGCY 9 cut(s) 221, 370, 383, 443, 494, 575, 585, 620, 661
CviKI_1 RGCY 9 cut(s) 221, 370, 383, 443, 494, 575, 585, 620, 661
CviQI GTAC 4 cut(s) 279, 286, 338, 707
DdeI CTNAG 1 cut(s) 651
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Ecl136II GAGCTC 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 689
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 81, 480
EcoT38I GRGCYC 1 cut(s) 385
FaeI CATG 3 cut(s) 127, 474, 683
FatI CATG 3 cut(s) 123, 470, 679
Fnu4HI GCNGC 3 cut(s) 176, 495, 586
FokI GGATG 4 cut(s) 245, 377, 420, 441
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 3 cut(s) 176, 495, 586
FspBI CTAG 2 cut(s) 222, 294
GlaI GCGC 1 cut(s) 534
GluI GCNGC 3 cut(s) 176, 495, 586
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 575, 620
HgaI GACGC 1 cut(s) 426
HhaI GCGC 1 cut(s) 535
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 3 cut(s) 127, 474, 683
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 4 cut(s) 20, 550, 644, 683
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 2 cut(s) 707, 709
Hpy188I TCNGA 2 cut(s) 61, 555
Hpy188III TCNNGA 3 cut(s) 115, 155, 613
Hpy8I GTNNAC 2 cut(s) 707, 709
HpyAV CCTTC 4 cut(s) 42, 247, 610, 695
HpyCH4III ACNGT 2 cut(s) 198, 520
HpyCH4IV ACGT 2 cut(s) 407, 578
HpyCH4V TGCA 5 cut(s) 175, 202, 460, 497, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 491, 541
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 2 cut(s) 407, 578
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 3 cut(s) 127, 474, 683
HspAI GCGC 1 cut(s) 533
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 2 cut(s) 380, 530
Lsp1109I GCAGC 3 cut(s) 187, 481, 572
LweI GCATC 3 cut(s) 52, 223, 419
MaeI CTAG 2 cut(s) 222, 294
MaeII ACGT 2 cut(s) 407, 578
MalI GATC 1 cut(s) 333
MbiI CCGCTC 1 cut(s) 160
MboI GATC 1 cut(s) 331
MboII GAAGA 3 cut(s) 175, 178, 368
MhlI GDGCHC 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 3 cut(s) 13, 181, 299
MluNI TGGCCA 1 cut(s) 575
MnlI CCTC 7 cut(s) 46, 85, 352, 392, 517, 549, 619
Mox20I TGGCCA 1 cut(s) 575
MroXI GAANNNNTTC 1 cut(s) 303
MscI TGGCCA 1 cut(s) 575
MseI TTAA 4 cut(s) 387, 512, 657, 696
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 575
MspR9I CCNGG 2 cut(s) 83, 482
MvaI CCWGG 2 cut(s) 83, 482
MwoI GCNNNNNNNGC 2 cut(s) 491, 541
NdeII GATC 1 cut(s) 331
NlaIII CATG 3 cut(s) 127, 474, 683
NlaIV GGNNCC 1 cut(s) 280
NspI RCATGY 1 cut(s) 474
PaeI GCATGC 1 cut(s) 474
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 4 cut(s) 20, 550, 644, 683
PkrI GCNGC 3 cut(s) 177, 496, 587
Ppu21I YACGTR 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 81, 480
PspGI CCWGG 2 cut(s) 81, 480
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 689
RsaI GTAC 4 cut(s) 280, 287, 339, 708
RsaNI GTAC 4 cut(s) 279, 286, 338, 707
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 4 cut(s) 387, 512, 657, 696
SatI GCNGC 3 cut(s) 176, 495, 586
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 689
ScrFI CCNGG 2 cut(s) 83, 482
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 3 cut(s) 52, 223, 419
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 231
SphI GCATGC 1 cut(s) 474
Sse9I AATT 3 cut(s) 13, 181, 299
SsiI CCGC 2 cut(s) 160, 253
SspI AATATT 1 cut(s) 148
SspMI CTAG 2 cut(s) 222, 294
SstI GAGCTC 1 cut(s) 385
StyD4I CCNGG 2 cut(s) 81, 480
TaaI ACNGT 2 cut(s) 198, 520
TaiI ACGT 2 cut(s) 410, 581
TaqI TCGA 1 cut(s) 501
TasI AATT 3 cut(s) 13, 181, 299
TatI WGTACW 1 cut(s) 706
TfiI GAWTC 4 cut(s) 20, 550, 644, 683
Tru1I TTAA 4 cut(s) 387, 512, 657, 696
Tru9I TTAA 4 cut(s) 387, 512, 657, 696
TscAI CASTG 3 cut(s) 233, 268, 525
TseI GCWGC 3 cut(s) 175, 494, 585
TspDTI ATGAA 4 cut(s) 140, 206, 225, 683
TspRI CASTG 3 cut(s) 233, 268, 525
VpaK11BI GGWCC 1 cut(s) 689
XapI RAATTY 2 cut(s) 181, 299
XceI RCATGY 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 2 cut(s) 222, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.