Rh7BG324200

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006734
Physical Location & Seq
Forward (+)
31974481 .. 31983055
8575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG324200.1

Sequence Viewer

Length: 1032 bp
ATGGCAGTAGCAATGAGCTACTGCTGCAGCAAGCCTTCCCCATTTCTGGGTCGATACCCAACTCGTTTTCATTTGGGGAAATCAAAACCTGGACAAGTTGCTGTTCAGGCGCCTAGAATCAGTGCATTATTTTGGGGAGCTAAAAAGTCCCCGGAGCCAAAAGAAATAGAGACCAATCTTTCACTTGGGGAATTCACTTTGACAGGCCCAGAGGGAGGAATCTCAGAGGGGAAGCCTAGTAAGATATCGGTTTCAGTCATTTCTTCAATCTCTGAGGTCTCATCCTCTGACTGGGATGCGTGCAGTTTGGATGCTACCGGCCCTGATAAATATAACCCATTTCTTACTCATGCTTTTCTTTCAAGCTTGGAACACTCGGCTTCTGCAGTCAAGGAAACAGGATGGATTCCAAGCCATATCGTTGCTAAGGATGCAAATGAAAATACTTTAGGTGTTGTTCCACTTTATCTTAAAAGTCATTCTTATGGTGAATTTGTTTTTGATCATTCCTGGGCTGATGCATGCTATAGTTTTGGGTCAAGATATTATCCAAAGTTACAATGTTGTGTCCCTTTTACTCCAGTAACTGGCCCAAGGATTTTAGTACGGAATACCTTGTTCAAAGATCAAGTTTTTGACATCATAGTTTCTGCTCTCAAGGATCTGACGGCCAAGTACCAGATTTCATCACTGCACATTACCTTCCCATCTGAAAAGGAGTGGGACAAACTGAGTGAAAAGGGGTTTCTACAGAGAATTGGAATGCAGTACCATTGGAAAAATCGTAATTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGGAAAAAGATTTTGCAGCAGAATTTGACTATGAAACGGTTGCGAGGCGATGAAATAAAGGCTAGACACTGGGATGCCTTCTATAACTTCTACCGCAACACCACTGACAACAAGTTCGTTCCTTATAAATCTCTTATGTTTGTTTGTATTTTATCTTCTTCTTCTTTTTTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

343

Amino Acids

39.04

Weight (kDa)

9.24

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FemAB_like PF04339 89 - 323 1.3e-90 Peptidogalycan biosysnthesis/recognition
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 792, 981
AccB1I GGYRCC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 856
AciI CCGC 2 cut(s) 856, 949
AclWI GGATC 1 cut(s) 669
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 4 cut(s) 191, 491, 796, 877
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 3 cut(s) 606, 677, 770
AfiI CCNNNNNNNGG 5 cut(s) 46, 47, 215, 291, 587
AgsI TTSAA 3 cut(s) 267, 363, 622
AjnI CCWGG 2 cut(s) 88, 509
AluBI AGCT 3 cut(s) 18, 140, 366
AluI AGCT 3 cut(s) 18, 140, 366
Alw26I GTCTC 2 cut(s) 164, 283
AlwI GGATC 1 cut(s) 669
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 4 cut(s) 205, 319, 589, 669
ApeKI GCWGC 3 cut(s) 24, 27, 871
ApoI RAATTY 4 cut(s) 191, 491, 796, 877
ArsI GACNNNNNNTTYG 2 cut(s) 953, 985
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 206, 320, 590
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 500
BanI GGYRCC 1 cut(s) 109
BarI GAAGNNNNNNTAC 2 cut(s) 994, 1026
BbvI GCAGC 3 cut(s) 11, 39, 883
BccI CCATC 3 cut(s) 396, 715, 808
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 2 cut(s) 90, 511
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 164, 283
BfaI CTAG 3 cut(s) 114, 237, 918
BfmI CTRYAG 4 cut(s) 25, 384, 526, 749
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 3 cut(s) 25, 28, 872
BlsI GCNGC 3 cut(s) 26, 29, 873
Bme1390I CCNGG 3 cut(s) 90, 152, 511
BmgT120I GGNCC 3 cut(s) 206, 320, 590
BmiI GGNNCC 2 cut(s) 111, 156
BmrFI CCNGG 3 cut(s) 90, 152, 511
BmrI ACTGGG 2 cut(s) 301, 934
BmsI GCATC 5 cut(s) 286, 301, 421, 508, 919
BmuI ACTGGG 2 cut(s) 301, 934
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 2 cut(s) 164, 283
BsaJI CCNNGG 3 cut(s) 150, 510, 593
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 47, 215, 291, 587
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 4 cut(s) 296, 581, 592, 929
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 90, 511
BseDI CCNNGG 3 cut(s) 150, 510, 593
BseGI GGATG 6 cut(s) 281, 301, 316, 407, 436, 934
BseLI CCNNNNNNNGG 5 cut(s) 46, 47, 215, 291, 587
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 237, 264, 722
BseNI ACTGG 4 cut(s) 296, 581, 592, 929
BseXI GCAGC 3 cut(s) 11, 39, 883
BsgI GTGCAG 2 cut(s) 322, 677
BshFI GGCC 4 cut(s) 207, 321, 591, 671
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 2 cut(s) 152, 318
BslFI GGGAC 3 cut(s) 133, 554, 737
BslI CCNNNNNNNGG 5 cut(s) 46, 47, 215, 291, 587
BsmAI GTCTC 2 cut(s) 164, 283
BsmFI GGGAC 3 cut(s) 133, 554, 737
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 4 cut(s) 207, 321, 591, 671
Bso31I GGTCTC 2 cut(s) 164, 283
Bsp143I GATC 3 cut(s) 502, 625, 661
BspACI CCGC 2 cut(s) 856, 949
BspANI GGCC 4 cut(s) 207, 321, 591, 671
BspCNI CTCAG 3 cut(s) 236, 265, 723
BspLI GGNNCC 2 cut(s) 111, 156
BspMAI CTGCAG 2 cut(s) 29, 388
BspPI GGATC 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 2 cut(s) 164, 283
BsrBI CCGCTC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 4 cut(s) 296, 581, 592, 929
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 150, 510, 593
BssMI GATC 3 cut(s) 502, 625, 661
BssNI GRCGYC 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 2 cut(s) 90, 511
Bst4CI ACNGT 1 cut(s) 894
BstACI GRCGYC 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 32, 301, 523
BstDEI CTNAG 4 cut(s) 223, 273, 426, 731
BstF5I GGATG 6 cut(s) 281, 301, 316, 407, 436, 934
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 505, 628, 664
BstMAI GTCTC 2 cut(s) 164, 283
BstMBI GATC 3 cut(s) 502, 625, 661
BstMWI GCNNNNNNNGC 3 cut(s) 24, 107, 431
BstNI CCWGG 2 cut(s) 90, 511
BstNSI RCATGY 1 cut(s) 525
BstSCI CCNGG 3 cut(s) 88, 150, 509
BstSFI CTRYAG 4 cut(s) 25, 384, 526, 749
BstV1I GCAGC 3 cut(s) 11, 39, 883
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 4 cut(s) 207, 321, 591, 671
BtgZI GCGATG 1 cut(s) 918
BtsCI GGATG 6 cut(s) 281, 301, 316, 407, 436, 934
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 4 cut(s) 127, 689, 922, 957
Cac8I GCNNGC 3 cut(s) 32, 301, 523
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 3 cut(s) 206, 320, 590
Csp6I GTAC 3 cut(s) 605, 676, 769
CviAII CATG 3 cut(s) 350, 522, 820
CviQI GTAC 3 cut(s) 605, 676, 769
DdeI CTNAG 4 cut(s) 223, 273, 426, 731
DinI GGCGCC 1 cut(s) 111
DpnI GATC 3 cut(s) 504, 627, 663
DpnII GATC 3 cut(s) 502, 625, 661
EaeI YGGCCR 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 593
Eco31I GGTCTC 2 cut(s) 164, 283
Eco32I GATATC 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 88, 509
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 523
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 3 cut(s) 353, 525, 823
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FaqI GGGAC 3 cut(s) 133, 554, 737
FatI CATG 3 cut(s) 349, 521, 819
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 3 cut(s) 25, 28, 872
FokI GGATG 6 cut(s) 268, 308, 323, 414, 443, 941
Fsp4HI GCNGC 3 cut(s) 25, 28, 872
FspBI CTAG 3 cut(s) 114, 237, 918
GlaI GCGC 1 cut(s) 111
GluI GCNGC 3 cut(s) 25, 28, 872
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 4 cut(s) 207, 321, 591, 671
HapII CCGG 2 cut(s) 152, 318
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 3 cut(s) 353, 525, 823
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 3 cut(s) 117, 219, 406
HpaII CCGG 2 cut(s) 152, 318
HphI GGTGA 1 cut(s) 500
Hpy188I TCNGA 5 cut(s) 226, 274, 289, 666, 712
Hpy188III TCNNGA 4 cut(s) 540, 811, 851, 1029
HpyAV CCTTC 3 cut(s) 45, 712, 943
HpyCH4III ACNGT 1 cut(s) 894
HpyCH4V TGCA 9 cut(s) 27, 125, 303, 386, 434, 521, 694, 766, 871
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 107, 431
HpyF3I CTNAG 4 cut(s) 223, 273, 426, 731
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 3 cut(s) 353, 525, 823
HspAI GCGC 1 cut(s) 110
KasI GGCGCC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 3 cut(s) 502, 625, 661
LmnI GCTCC 2 cut(s) 137, 154
Lsp1109I GCAGC 3 cut(s) 11, 39, 883
LweI GCATC 5 cut(s) 286, 301, 421, 508, 919
MaeI CTAG 3 cut(s) 114, 237, 918
MaeIII GTNAC 2 cut(s) 555, 583
MalI GATC 3 cut(s) 504, 627, 663
MbiI CCGCTC 1 cut(s) 856
MboI GATC 3 cut(s) 502, 625, 661
MboII GAAGA 4 cut(s) 255, 1002, 1005, 1008
MflI RGATCY 1 cut(s) 661
MluCI AATT 6 cut(s) 191, 491, 756, 787, 796, 877
Mly113I GGCGCC 1 cut(s) 110
MnlI CCTC 6 cut(s) 205, 209, 220, 268, 295, 893
Mph1103I ATGCAT 1 cut(s) 523
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 483, 927
MspI CCGG 2 cut(s) 152, 318
MspR9I CCNGG 3 cut(s) 90, 152, 511
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 2 cut(s) 90, 511
MwoI GCNNNNNNNGC 3 cut(s) 24, 107, 431
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 1 cut(s) 152
NdeII GATC 3 cut(s) 502, 625, 661
NlaIII CATG 3 cut(s) 353, 525, 823
NlaIV GGNNCC 2 cut(s) 111, 156
NmeAIII GCCGAG 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 1 cut(s) 525
PaeI GCATGC 1 cut(s) 525
PctI GAATGC 1 cut(s) 768
PfeI GAWTC 3 cut(s) 117, 219, 406
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 3 cut(s) 26, 29, 873
PluTI GGCGCC 1 cut(s) 113
PsiI TTATAA 2 cut(s) 792, 981
Psp6I CCWGG 2 cut(s) 88, 509
PspGI CCWGG 2 cut(s) 88, 509
PspN4I GGNNCC 2 cut(s) 111, 156
PspPI GGNCC 3 cut(s) 206, 320, 590
PstI CTGCAG 2 cut(s) 29, 388
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 3 cut(s) 606, 677, 770
RsaNI GTAC 3 cut(s) 605, 676, 769
RseI CAYNNNNRTG 2 cut(s) 483, 927
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 3 cut(s) 25, 28, 872
Sau3AI GATC 3 cut(s) 502, 625, 661
Sau96I GGNCC 3 cut(s) 206, 320, 590
ScrFI CCNGG 3 cut(s) 90, 152, 511
SetI ASST 8 cut(s) 20, 91, 142, 279, 368, 454, 617, 704
SfaNI GCATC 5 cut(s) 286, 301, 421, 508, 919
SfcI CTRYAG 4 cut(s) 25, 384, 526, 749
SfoI GGCGCC 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 483, 927
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
SphI GCATGC 1 cut(s) 525
Sse9I AATT 6 cut(s) 191, 491, 756, 787, 796, 877
SsiI CCGC 2 cut(s) 856, 949
SspDI GGCGCC 1 cut(s) 109
SspI AATATT 1 cut(s) 844
SspMI CTAG 3 cut(s) 114, 237, 918
StyD4I CCNGG 3 cut(s) 88, 150, 509
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 1 cut(s) 894
TaqI TCGA 1 cut(s) 52
TasI AATT 6 cut(s) 191, 491, 756, 787, 796, 877
TfiI GAWTC 3 cut(s) 117, 219, 406
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 4 cut(s) 127, 696, 929, 964
TseI GCWGC 3 cut(s) 24, 27, 871
TspDTI ATGAA 6 cut(s) 59, 453, 675, 836, 902, 921
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 4 cut(s) 127, 696, 929, 964
Van91I CCANNNNNTGG 1 cut(s) 587
XapI RAATTY 4 cut(s) 191, 491, 796, 877
XceI RCATGY 1 cut(s) 525
XspI CTAG 3 cut(s) 114, 237, 918
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.