Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0006734

Physical Location & Seq

Genomic Coordinates Reverse (-)

1497 .. 4562

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atggcagtagcaatgagctactgctgcagcaagccttccccatttctgggtcgatacccaactcgttttcatttggggaaatcaaaacctggacaagttgctgttcaggcgcctagaattagtgcattattttggggagcaaaaaagtccccggagccaaaagaaatagaggccaatctttcacttggggaattcactttgacaggcccagagggaggaatctcagaggggaagaagcctagtaagatatcggtttcagtcatttcttcaatctctgaggtctcatcctctgactgggatgcgtgcagtttggatgctaccggccctgataaatataacccatttcttactcatgcttttctttcaagcttggaactgtcgggttctgcagtcaaggaaacaggatggattccaagccatatcgttgccaaggatgcaaatgaaaatactttaggtgttgttccactttatcttaaaagtcattcttatggtgaatttgtttttgatcattcctgggctgatgcatactatagttttgggtcaagatattatccaaagttacaatgttgtgtcccttttactccagtaactggcccaaggattttagtacggaataccttgttcaaagatcaagtttttgacatcatagtttctgcactcaaggatctgacggccaagtaccagatttcatcactgcacattaccttcccatctgaaaaggagtgggacaaactgagtgaaaagggatttctacaaagaattggaatgcagtaccattggaaaaatcgtaattataaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FemAB_like

Protein Analysis

267

Amino Acids

29.72

Weight (kDa)

8.93

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23390 AT2G23390
fragaria_vesca	FvH4_5g27990 FvH4_5g27990 FvH4_5g27990 FvH4_5g27990 FvH4_5g27990
malus_domestica	MD08G1247400.v1.1
prunus_persica	Prupe.1G584700_v2.0.a1 Prupe.1G584700_v2.0.a1
pyrus_communis	pycom08g21430
rosa_chinensis	RchiOBHm_Chr7g0220181 RchiOBHm_Chr7g0220471
rosa_laevigata	RLG00000002252
rosa_multiflora	Rmu_sc0001136.1_g000001 Rmu_sc0006361.1_g000011 Rmu_sc0016657.1_g000010
rosa_roxburghii	Rroxscaffold_3G00239740
rosa_rugosa	Rorug07G0190500 Rorug07G0190500 Rorug07G0190500
rosa_samantha	Rh7AG333000 Rh7BG324200 Rh7CG350500 Rh7DG329100
rosa_wichuraiana	Rw7G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	109
AccB7I	CCANNNNNTGG	1 cut(s)	590
AclWI	GGATC	1 cut(s)	672
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	2 cut(s)	191, 494
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	3 cut(s)	609, 680, 773
AfiI	CCNNNNNNNGG	5 cut(s)	46, 47, 215, 294, 590
AgsI	TTSAA	3 cut(s)	270, 366, 625
AjnI	CCWGG	2 cut(s)	88, 512
AluBI	AGCT	2 cut(s)	18, 369
AluI	AGCT	2 cut(s)	18, 369
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	672
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	5 cut(s)	171, 205, 322, 592, 672
ApeKI	GCWGC	2 cut(s)	24, 27
ApoI	RAATTY	2 cut(s)	191, 494
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	3 cut(s)	206, 323, 593
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	11, 39
BccI	CCATC	2 cut(s)	399, 718
BceAI	ACGGC	1 cut(s)	687
BciT130I	CCWGG	2 cut(s)	90, 514
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	2 cut(s)	114, 240
BfmI	CTRYAG	3 cut(s)	25, 387, 529
BfoI	RGCGCY	1 cut(s)	113
BisI	GCNGC	2 cut(s)	25, 28
BlsI	GCNGC	2 cut(s)	26, 29
Bme1390I	CCNGG	3 cut(s)	90, 152, 514
BmgT120I	GGNCC	3 cut(s)	206, 323, 593
BmiI	GGNNCC	2 cut(s)	111, 156
BmrFI	CCNGG	3 cut(s)	90, 152, 514
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	4 cut(s)	289, 304, 424, 511
BmuI	ACTGGG	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	150, 429, 513, 596
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 47, 215, 294, 590
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	3 cut(s)	299, 584, 595
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	90, 514
BseDI	CCNNGG	4 cut(s)	150, 429, 513, 596
BseGI	GGATG	5 cut(s)	284, 304, 319, 410, 439
BseLI	CCNNNNNNNGG	5 cut(s)	46, 47, 215, 294, 590
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	237, 267, 725
BseNI	ACTGG	3 cut(s)	299, 584, 595
BseXI	GCAGC	2 cut(s)	11, 39
BsgI	GTGCAG	3 cut(s)	325, 639, 680
BshFI	GGCC	5 cut(s)	173, 207, 324, 594, 674
BshNI	GGYRCC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	152, 321
BslFI	GGGAC	3 cut(s)	133, 557, 740
BslI	CCNNNNNNNGG	5 cut(s)	46, 47, 215, 294, 590
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	3 cut(s)	133, 557, 740
BsmI	GAATGC	1 cut(s)	771
BsnI	GGCC	5 cut(s)	173, 207, 324, 594, 674
Bso31I	GGTCTC	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	505, 628, 664
BspANI	GGCC	5 cut(s)	173, 207, 324, 594, 674
BspCNI	CTCAG	3 cut(s)	236, 268, 726
BspLI	GGNNCC	2 cut(s)	111, 156
BspMAI	CTGCAG	2 cut(s)	29, 391
BspPI	GGATC	1 cut(s)	672
BspT107I	GGYRCC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	3 cut(s)	299, 584, 595
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	4 cut(s)	150, 429, 513, 596
BssMI	GATC	3 cut(s)	505, 628, 664
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	429, 596
Bst2UI	CCWGG	2 cut(s)	90, 514
Bst4CI	ACNGT	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	32, 304
BstDEI	CTNAG	3 cut(s)	223, 276, 734
BstF5I	GGATG	5 cut(s)	284, 304, 319, 410, 439
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	508, 631, 667
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	3 cut(s)	505, 628, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 107, 434
BstNI	CCWGG	2 cut(s)	90, 514
BstSCI	CCNGG	3 cut(s)	88, 150, 512
BstSFI	CTRYAG	3 cut(s)	25, 387, 529
BstV1I	GCAGC	2 cut(s)	11, 39
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	5 cut(s)	173, 207, 324, 594, 674
BtsCI	GGATG	5 cut(s)	284, 304, 319, 410, 439
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	1 cut(s)	692
Cac8I	GCNNGC	2 cut(s)	32, 304
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	206, 323, 593
Csp6I	GTAC	3 cut(s)	608, 679, 772
CviAII	CATG	1 cut(s)	353
CviQI	GTAC	3 cut(s)	608, 679, 772
DdeI	CTNAG	3 cut(s)	223, 276, 734
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	3 cut(s)	507, 630, 666
DpnII	GATC	3 cut(s)	505, 628, 664
EaeI	YGGCCR	1 cut(s)	672
Eco130I	CCWWGG	2 cut(s)	429, 596
Eco31I	GGTCTC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	88, 512
EcoRV	GATATC	1 cut(s)	249
EcoT14I	CCWWGG	2 cut(s)	429, 596
EcoT22I	ATGCAT	1 cut(s)	526
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	2 cut(s)	429, 596
FaeI	CATG	1 cut(s)	356
FaiI	YATR	8 cut(s)	336, 354, 420, 489, 526, 531, 647, 795
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	3 cut(s)	133, 557, 740
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	25, 28
FokI	GGATG	5 cut(s)	271, 311, 326, 417, 446
Fsp4HI	GCNGC	2 cut(s)	25, 28
FspBI	CTAG	2 cut(s)	114, 240
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	2 cut(s)	25, 28
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	5 cut(s)	173, 207, 324, 594, 674
HapII	CCGG	2 cut(s)	152, 321
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	2 cut(s)	219, 409
HpaII	CCGG	2 cut(s)	152, 321
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	5 cut(s)	226, 277, 292, 669, 715
Hpy188III	TCNNGA	1 cut(s)	543
HpyAV	CCTTC	2 cut(s)	45, 715
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	9 cut(s)	27, 125, 306, 389, 437, 524, 656, 697, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 107, 434
HpyF3I	CTNAG	3 cut(s)	223, 276, 734
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	505, 628, 664
LmnI	GCTCC	2 cut(s)	137, 154
Lsp1109I	GCAGC	2 cut(s)	11, 39
LweI	GCATC	4 cut(s)	289, 304, 424, 511
MaeI	CTAG	2 cut(s)	114, 240
MaeIII	GTNAC	2 cut(s)	558, 586
MalI	GATC	3 cut(s)	507, 630, 666
MboI	GATC	3 cut(s)	505, 628, 664
MboII	GAAGA	2 cut(s)	244, 258
MflI	RGATCY	1 cut(s)	664
MluCI	AATT	5 cut(s)	117, 191, 494, 759, 790
Mly113I	GGCGCC	1 cut(s)	110
MnlI	CCTC	6 cut(s)	163, 205, 209, 220, 271, 298
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	2 cut(s)	152, 321
MspR9I	CCNGG	3 cut(s)	90, 152, 514
Mva1269I	GAATGC	1 cut(s)	771
MvaI	CCWGG	2 cut(s)	90, 514
MwoI	GCNNNNNNNGC	3 cut(s)	24, 107, 434
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	505, 628, 664
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	111, 156
NsiI	ATGCAT	1 cut(s)	526
PctI	GAATGC	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	219, 409
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	2 cut(s)	26, 29
PluTI	GGCGCC	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	88, 512
PspGI	CCWGG	2 cut(s)	88, 512
PspN4I	GGNNCC	2 cut(s)	111, 156
PspPI	GGNCC	3 cut(s)	206, 323, 593
PstI	CTGCAG	2 cut(s)	29, 391
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	3 cut(s)	609, 680, 773
RsaNI	GTAC	3 cut(s)	608, 679, 772
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	2 cut(s)	25, 28
Sau3AI	GATC	3 cut(s)	505, 628, 664
Sau96I	GGNCC	3 cut(s)	206, 323, 593
ScrFI	CCNGG	3 cut(s)	90, 152, 514
SetI	ASST	7 cut(s)	20, 91, 282, 371, 457, 620, 707
SfaNI	GCATC	4 cut(s)	289, 304, 424, 511
SfcI	CTRYAG	3 cut(s)	25, 387, 529
SfoI	GGCGCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	5 cut(s)	117, 191, 494, 759, 790
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	114, 240
StyD4I	CCNGG	3 cut(s)	88, 150, 512
StyI	CCWWGG	2 cut(s)	429, 596
TaaI	ACNGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	52
TasI	AATT	5 cut(s)	117, 191, 494, 759, 790
TfiI	GAWTC	2 cut(s)	219, 409
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	699
TseI	GCWGC	2 cut(s)	24, 27
TspDTI	ATGAA	3 cut(s)	59, 456, 678
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	1 cut(s)	699
Van91I	CCANNNNNTGG	1 cut(s)	590
XapI	RAATTY	2 cut(s)	191, 494
XspI	CTAG	2 cut(s)	114, 240
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.