Rorug07G0190500

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006734
Physical Location & Seq
Forward (+)
16132611 .. 16135165
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0190500.1

Sequence Viewer

Length: 801 bp
ATGTATCGCATAGCTTCATCCTTCGCCTCTTCAACTCCTAAGAAGCTGGTCCATGCTAGGGTTTTATGCAACAGGAGCTATGTGGCGCAAGATCTCACCTTCCAGATTGGGCCTCGCGCCGCCTTGTTTGAGGTTGCCAAGTTTACCATGGCCGCTCTGCTGCAACGTGTCTCTCAGCTCGGGGAGGCCTTCAGAGTTACCATGGGATCAAAGGTTCCCTCTATTTTTGCAAATGGTCAACGAGAGATTGGAGAGTGCTTAGCAAGGGCATTGCAGAACGTTGAAAAGAAAGGGCATGTTTCTTCCCTCAAAGATTCTGGTATTGGGGAAAATAGGAGAGGCATTTTAGATTATCTAGCCACCCTCAGGGGGCAAGAGGTTATAAGTGAAGATAACAGTTTCATTATCGACAGACTGCTCATGTCACCCACATTAAATCAATTGATTCGTCATAATAGAACTGAGAAAAGTCGCACAAACCGTAATCGAGCTTTGGATAAATGCCCCCAAAAGCAAGGAGTATGCCTACGGGTTTTTACAAGAACACCGAAGAAGCCAAATTCAGCTCTGCGTAAGGTAGCCAAAGTAAGGCTAAGCAATCGAAATGATGTATTTTCTTACATTCCCGGTGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGGGGCAGAGTGAAAGATTTGCCAGGTGTGAAATTCCACTGTATCAGAGGAGTTAAGGATTTGCTGGGACTTCCAAACCGAAGAAGAGGCCGATCAAAATATGGTGCAGAGAAGCCCAAGAGCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

266

Amino Acids

29.79

Weight (kDa)

10.69

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosom_S12_S23 PF00164 160 - 264 6.1e-37 Ribosomal protein S12/S23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 155
AccII CGCG 1 cut(s) 117
AciI CCGC 2 cut(s) 120, 153
AclI AACGTT 1 cut(s) 279
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 559, 704
AcuI CTGAAG 1 cut(s) 175
AfiI CCNNNNNNNGG 5 cut(s) 58, 366, 369, 588, 632
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 33, 284
AjnI CCWGG 1 cut(s) 694
AloI GAACNNNNNNTCC 2 cut(s) 198, 230
AluBI AGCT 6 cut(s) 14, 46, 78, 178, 491, 566
AluI AGCT 6 cut(s) 14, 46, 78, 178, 491, 566
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 4 cut(s) 110, 150, 186, 760
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 559, 704
AspLEI GCGC 3 cut(s) 88, 119, 797
AspS9I GGNCC 2 cut(s) 49, 110
AsuC2I CCSGG 1 cut(s) 627
AsuHPI GGTGA 3 cut(s) 88, 417, 641
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 49
AxyI CCTNAGG 1 cut(s) 365
BbvI GCAGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 696
BcnI CCSGG 1 cut(s) 627
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 2 cut(s) 57, 356
BfoI RGCGCY 1 cut(s) 798
BglII AGATCT 1 cut(s) 91
BisI GCNGC 3 cut(s) 120, 153, 161
BlpI GCTNAGC 2 cut(s) 259, 593
BlsI GCNGC 3 cut(s) 121, 154, 162
Bme1390I CCNGG 2 cut(s) 627, 696
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 49, 110
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 627, 696
Bpu1102I GCTNAGC 2 cut(s) 259, 593
BpuMI CCSGG 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 147, 201
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 366, 369, 588, 632
Bse21I CCTNAGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 147, 201
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 5 cut(s) 58, 366, 369, 588, 632
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 188, 379, 453
BseRI GAGGAG 1 cut(s) 735
BseXI GCAGC 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 798
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 4 cut(s) 112, 152, 188, 762
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 627
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 5 cut(s) 58, 366, 369, 588, 632
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 753
BsnI GGCC 4 cut(s) 112, 152, 188, 762
BsoBI CYCGRG 1 cut(s) 179
Bsp143I GATC 3 cut(s) 91, 206, 764
Bsp1720I GCTNAGC 2 cut(s) 259, 593
Bsp19I CCATGG 2 cut(s) 147, 201
BspACI CCGC 2 cut(s) 120, 153
BspANI GGCC 4 cut(s) 112, 152, 188, 762
BspCNI CTCAG 3 cut(s) 187, 378, 454
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 147, 201
BssMI GATC 3 cut(s) 91, 206, 764
BssT1I CCWWGG 2 cut(s) 147, 201
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 3 cut(s) 398, 482, 713
Bst6I CTCTTC 2 cut(s) 34, 751
BstDEI CTNAG 6 cut(s) 39, 174, 259, 365, 462, 593
BstDSI CCRYGG 2 cut(s) 147, 201
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 3 cut(s) 88, 119, 797
BstKTI GATC 3 cut(s) 94, 209, 767
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 91, 206, 764
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 625, 694
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 365
BsuRI GGCC 4 cut(s) 112, 152, 188, 762
BtgI CCRYGG 2 cut(s) 147, 201
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 709
CfoI GCGC 3 cut(s) 88, 119, 797
Cfr13I GGNCC 2 cut(s) 49, 110
CviAII CATG 5 cut(s) 53, 148, 202, 296, 421
DdeI CTNAG 6 cut(s) 39, 174, 259, 365, 462, 593
DpnI GATC 3 cut(s) 93, 208, 766
DpnII GATC 3 cut(s) 91, 206, 764
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 34, 751
EarI CTCTTC 2 cut(s) 34, 751
Eco130I CCWWGG 2 cut(s) 147, 201
Eco147I AGGCCT 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 147, 201
ErhI CCWWGG 2 cut(s) 147, 201
FaeI CATG 5 cut(s) 56, 151, 205, 299, 424
FaqI GGGAC 1 cut(s) 753
FatI CATG 5 cut(s) 52, 147, 201, 295, 420
Fnu4HI GCNGC 3 cut(s) 120, 153, 161
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 3 cut(s) 120, 153, 161
FspBI CTAG 2 cut(s) 57, 356
GlaI GCGC 3 cut(s) 87, 118, 796
GluI GCNGC 3 cut(s) 120, 153, 161
GsaI CCCAGC 1 cut(s) 740
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 4 cut(s) 112, 152, 188, 762
HapII CCGG 1 cut(s) 627
HhaI GCGC 3 cut(s) 88, 119, 797
Hin1II CATG 5 cut(s) 56, 151, 205, 299, 424
Hin6I GCGC 3 cut(s) 86, 117, 795
HinP1I GCGC 3 cut(s) 86, 117, 795
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HinfI GANTC 2 cut(s) 314, 445
HpaII CCGG 1 cut(s) 627
HphI GGTGA 3 cut(s) 88, 417, 641
Hpy166II GTNNAC 2 cut(s) 144, 239
Hpy188I TCNGA 2 cut(s) 194, 719
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 144, 239
HpyAV CCTTC 4 cut(s) 31, 109, 199, 626
HpyCH4III ACNGT 3 cut(s) 398, 482, 713
HpyCH4IV ACGT 2 cut(s) 166, 279
HpyCH4V TGCA 6 cut(s) 69, 163, 230, 274, 646, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 6 cut(s) 39, 174, 259, 365, 462, 593
HpySE526I ACGT 2 cut(s) 166, 279
Hsp92II CATG 5 cut(s) 56, 151, 205, 299, 424
HspAI GCGC 3 cut(s) 86, 117, 795
Kzo9I GATC 3 cut(s) 91, 206, 764
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 2 cut(s) 57, 356
MaeII ACGT 2 cut(s) 166, 279
MaeIII GTNAC 2 cut(s) 196, 423
MalI GATC 3 cut(s) 93, 208, 766
MbiI CCGCTC 1 cut(s) 155
MboI GATC 3 cut(s) 91, 206, 764
MboII GAAGA 6 cut(s) 21, 294, 401, 562, 765, 768
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 1 cut(s) 91
MluCI AATT 4 cut(s) 440, 559, 640, 704
MseI TTAA 3 cut(s) 434, 665, 726
MspI CCGG 1 cut(s) 627
MspR9I CCNGG 2 cut(s) 627, 696
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 627
NcoI CCATGG 2 cut(s) 147, 201
NdeII GATC 3 cut(s) 91, 206, 764
NlaIII CATG 5 cut(s) 56, 151, 205, 299, 424
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 423
NspI RCATGY 1 cut(s) 299
PceI AGGCCT 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PfeI GAWTC 2 cut(s) 314, 445
PkrI GCNGC 3 cut(s) 121, 154, 162
PsiI TTATAA 1 cut(s) 383
Psp1406I AACGTT 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 49, 110
PsuI RGATCY 1 cut(s) 91
SaqAI TTAA 3 cut(s) 434, 665, 726
SatI GCNGC 3 cut(s) 120, 153, 161
Sau3AI GATC 3 cut(s) 91, 206, 764
Sau96I GGNCC 2 cut(s) 49, 110
ScrFI CCNGG 2 cut(s) 627, 696
SinI GGWCC 1 cut(s) 49
Sse9I AATT 4 cut(s) 440, 559, 640, 704
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 2 cut(s) 120, 153
SspMI CTAG 2 cut(s) 57, 356
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 625, 694
StyI CCWWGG 2 cut(s) 147, 201
TaaI ACNGT 3 cut(s) 398, 482, 713
TaiI ACGT 2 cut(s) 169, 282
TaqI TCGA 3 cut(s) 408, 487, 601
TasI AATT 4 cut(s) 440, 559, 640, 704
TauI GCSGC 2 cut(s) 122, 155
TfiI GAWTC 2 cut(s) 314, 445
Tru1I TTAA 3 cut(s) 434, 665, 726
Tru9I TTAA 3 cut(s) 434, 665, 726
TscAI CASTG 1 cut(s) 716
TseFI GTSAC 1 cut(s) 423
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 6, 391
TspRI CASTG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 2 cut(s) 559, 704
XceI RCATGY 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 2 cut(s) 57, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.