FvH4_5g27990

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006734
Physical Location & Seq
Reverse (-)
19204676 .. 19212488
7813 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27990.t3

Sequence Viewer

Length: 1404 bp
ATGGCAGTAGGCATGAGCTACTGCTGCAAGCCTTCCCCATTTCTCGGCGGACACCCAACTCGTTTTCGTTTGGGGAAATCGAAGCCTTCTTTTGCTGCTGCTGTTGAGGCTCCTCGAATCAGTGCATTGTTTTGGGGAGCAAACAAGTCCCCGGACCCAAAACAAATAGACACCAATGTTTCACTCGGGGATTTCACTTTGACACCCCCACAGGGAGGAGGAATCTCACCTAGTCAGATATCGGTGTCAGTCGTTTCTTCCATCTCCGATGTATCATCCACTGACTGGGATGCCTGCAGTTTGGATGCTACCGGACCTGATCATTATAACCCATTTCTCACTCATACTTTTCTTTCCAGCTTGGAACACTCTGCTTCTGCGGCCAAGGAAACAGGATGGATTCCGAGCCACATTGTTGCTAAGGATGAATATGGAAACACTTTAGGTGTTGTTCCACTCTATCTTAAAAGTCATTCTTATGGCGAATTTGTTTTTGATCATTCCTGGGCTGATGCGTATTATAGTTTTGGGTCGAGATACTATCCAAAGTTACAGTGTTGTGTCCCTTTTACTCCAGTAACTGGCCCAAGGATTTTAGTACGGAATACCTTGTTCAAAGATCAAGTTTTTGACATCATAGTTTCTGCTCTCAAGGATCTGACGGCCAAGTACCAGATTTCATCACTGCACATAACCTTCCCATCTGAAAAGGAGTGGGACAAACTGAGTGAAAAAGGGTTTCTACAGAGAATTGGAATGCAGTACCATTGGAAAAATCGCAATTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAGCGGAAAAATATTCGTCAAGAGCGGAAAAAGATTTTGCAGCAGAATTTGACTATGAAACGGTTGCGGGGTGATGAAATAAAGGCTAGACACTGGGATGCCTTCTATAACTTCTACCGCAACACCACTGACAACAAGTGGGGTACCCCGTACCTGACTAGGGAATTCTTCCACAACATAGGGTCAAAGATGGGAGATCAGGTACTCCTTGTTGTCGCTGAAGAGGGGGATGAGCTTGTAGCTGGAGCTCTTAATCTTATTGGAGGAGACACATTATTTGGTCGCCTTTGGGGATGCCATCCCCGAGCCTATTATCCAAGTTTGCATTTTGAAGCATGCTATTACCAGGCAATAGAAGCTGCAATTGAACTCGATTTAAGCACAGTGGAGGCAGGAGCGCAGGGTGAGCATAAGATTCAGCGAGGTTATATGCCTGTGGCAACTTATAGCTGCCATTACTTGATGAATCAAAGTTTCAAGAAGGCCATAGAGGACTTTTTAGTGCGTGAATCAACTCAGGTTAAGCTTGTGATGAAACTACTACATGATTCTGGTCCTTTCAAGGAAGGTGTGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

468

Amino Acids

52.82

Weight (kDa)

8.25

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FemAB_like PF04339 87 - 287 8.3e-78 Peptidogalycan biosysnthesis/recognition
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 327, 786
Acc65I GGTACC 1 cut(s) 968
AccB1I GGYRCC 1 cut(s) 968
AccB7I CCANNNNNTGG 2 cut(s) 285, 581
AccBSI CCGCTC 1 cut(s) 850
AciI CCGC 6 cut(s) 48, 380, 829, 850, 892, 943
AclWI GGATC 1 cut(s) 663
AcoI YGGCCR 2 cut(s) 381, 663
AcsI RAATTY 4 cut(s) 485, 790, 871, 989
AcuI CTGAAG 1 cut(s) 1065
AfaI GTAC 6 cut(s) 600, 671, 764, 970, 977, 1029
AfiI CCNNNNNNNGG 6 cut(s) 44, 212, 215, 285, 581, 985
AgsI TTSAA 5 cut(s) 616, 1157, 1193, 1303, 1387
AjnI CCWGG 2 cut(s) 503, 1170
AluBI AGCT 8 cut(s) 18, 360, 1060, 1067, 1073, 1184, 1275, 1351
AluI AGCT 8 cut(s) 18, 360, 1060, 1067, 1073, 1184, 1275, 1351
Alw21I GWGCWC 2 cut(s) 1075, 1401
Alw26I GTCTC 1 cut(s) 1086
Alw44I GTGCAC 1 cut(s) 1397
AlwI GGATC 1 cut(s) 663
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 2 cut(s) 185, 1128
AoxI GGCC 4 cut(s) 381, 583, 663, 1308
ApaLI GTGCAC 1 cut(s) 1397
ApeKI GCWGC 6 cut(s) 24, 95, 98, 865, 1184, 1275
ApoI RAATTY 4 cut(s) 485, 790, 871, 989
ArsI GACNNNNNNTTYG 2 cut(s) 1085, 1117
Asp718I GGTACC 1 cut(s) 968
AspLEI GCGC 1 cut(s) 1225
AspS9I GGNCC 4 cut(s) 154, 314, 584, 1379
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 219, 908, 1241
AvaI CYCGRG 2 cut(s) 185, 1128
AvaII GGWCC 3 cut(s) 154, 314, 1379
BaeGI GKGCMC 1 cut(s) 1401
BanI GGYRCC 1 cut(s) 968
BanII GRGCYC 1 cut(s) 1075
Bbv12I GWGCWC 2 cut(s) 1075, 1401
BbvI GCAGC 6 cut(s) 11, 82, 85, 877, 1171, 1262
BccI CCATC 6 cut(s) 269, 390, 709, 802, 1009, 1131
BceAI ACGGC 1 cut(s) 678
BciT130I CCWGG 2 cut(s) 505, 1172
BclI TGATCA 2 cut(s) 319, 496
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 1086
BfaI CTAG 3 cut(s) 231, 912, 984
BfmI CTRYAG 2 cut(s) 295, 743
BisI GCNGC 7 cut(s) 25, 96, 99, 381, 866, 1185, 1276
BlsI GCNGC 7 cut(s) 26, 97, 100, 382, 867, 1186, 1277
Bme1390I CCNGG 3 cut(s) 152, 505, 1172
Bme18I GGWCC 3 cut(s) 154, 314, 1379
BmeT110I CYCGRG 2 cut(s) 185, 1128
BmgT120I GGNCC 4 cut(s) 154, 314, 584, 1379
BmiI GGNNCC 3 cut(s) 111, 156, 970
BmrFI CCNGG 3 cut(s) 152, 505, 1172
BmrI ACTGGG 2 cut(s) 295, 928
BmsI GCATC 5 cut(s) 280, 295, 502, 913, 1109
BmuI ACTGGG 2 cut(s) 295, 928
BpmI CTGGAG 2 cut(s) 558, 1089
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 150, 384, 504, 587
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 212, 215, 285, 581, 985
Bse1I ACTGG 4 cut(s) 290, 575, 586, 923
BseBI CCWGG 2 cut(s) 505, 1172
BseDI CCNNGG 4 cut(s) 150, 384, 504, 587
BseGI GGATG 9 cut(s) 275, 295, 310, 401, 430, 928, 1060, 1123, 1124
BseLI CCNNNNNNNGG 6 cut(s) 44, 212, 215, 285, 581, 985
BseMII CTCAG 2 cut(s) 716, 1355
BseNI ACTGG 4 cut(s) 290, 575, 586, 923
BseRI GAGGAG 3 cut(s) 102, 231, 1104
BseSI GKGCMC 1 cut(s) 1401
BseXI GCAGC 6 cut(s) 11, 82, 85, 877, 1171, 1262
BsgI GTGCAG 1 cut(s) 671
BshFI GGCC 4 cut(s) 383, 585, 665, 1310
BshNI GGYRCC 1 cut(s) 968
BsiHKAI GWGCWC 2 cut(s) 1075, 1401
BsiHKCI CYCGRG 2 cut(s) 185, 1128
BsiSI CCGG 2 cut(s) 152, 312
BslFI GGGAC 3 cut(s) 133, 548, 731
BslI CCNNNNNNNGG 6 cut(s) 44, 212, 215, 285, 581, 985
BsmAI GTCTC 1 cut(s) 1086
BsmFI GGGAC 3 cut(s) 133, 548, 731
BsmI GAATGC 1 cut(s) 762
BsnI GGCC 4 cut(s) 383, 585, 665, 1310
BsoBI CYCGRG 2 cut(s) 185, 1128
Bsp1286I GDGCHC 2 cut(s) 1075, 1401
Bsp143I GATC 5 cut(s) 319, 496, 619, 655, 1021
BspACI CCGC 6 cut(s) 48, 380, 829, 850, 892, 943
BspANI GGCC 4 cut(s) 383, 585, 665, 1310
BspCNI CTCAG 2 cut(s) 717, 1354
BspLI GGNNCC 3 cut(s) 111, 156, 970
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 968
BsrBI CCGCTC 1 cut(s) 850
BsrI ACTGG 4 cut(s) 290, 575, 586, 923
BssECI CCNNGG 4 cut(s) 150, 384, 504, 587
BssMI GATC 5 cut(s) 319, 496, 619, 655, 1021
BssT1I CCWWGG 2 cut(s) 384, 587
Bst2UI CCWGG 2 cut(s) 505, 1172
Bst4CI ACNGT 3 cut(s) 555, 888, 1210
Bst6I CTCTTC 1 cut(s) 1041
BstC8I GCNNGC 3 cut(s) 29, 295, 1162
BstDEI CTNAG 3 cut(s) 420, 725, 1341
BstF5I GGATG 9 cut(s) 275, 295, 310, 401, 430, 928, 1060, 1123, 1124
BstHHI GCGC 1 cut(s) 1225
BstKTI GATC 5 cut(s) 322, 499, 622, 658, 1024
BstMAI GTCTC 1 cut(s) 1086
BstMBI GATC 5 cut(s) 319, 496, 619, 655, 1021
BstMWI GCNNNNNNNGC 6 cut(s) 24, 107, 380, 826, 1181, 1231
BstNI CCWGG 2 cut(s) 505, 1172
BstNSI RCATGY 1 cut(s) 1164
BstSCI CCNGG 3 cut(s) 150, 503, 1170
BstSFI CTRYAG 2 cut(s) 295, 743
BstSLI GKGCMC 1 cut(s) 1401
BstV1I GCAGC 6 cut(s) 11, 82, 85, 877, 1171, 1262
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 4 cut(s) 383, 585, 665, 1310
BtsCI GGATG 9 cut(s) 275, 295, 310, 401, 430, 928, 1060, 1123, 1124
BtsI GCAGTG 1 cut(s) 683
BtsIMutI CAGTG 7 cut(s) 127, 279, 560, 683, 916, 951, 1215
Cac8I GCNNGC 3 cut(s) 29, 295, 1162
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 1225
Cfr13I GGNCC 4 cut(s) 154, 314, 584, 1379
Csp6I GTAC 6 cut(s) 599, 670, 763, 969, 976, 1028
CviAII CATG 4 cut(s) 13, 814, 1161, 1370
CviQI GTAC 6 cut(s) 599, 670, 763, 969, 976, 1028
DdeI CTNAG 3 cut(s) 420, 725, 1341
DpnI GATC 5 cut(s) 321, 498, 621, 657, 1023
DpnII GATC 5 cut(s) 319, 496, 619, 655, 1021
EaeI YGGCCR 2 cut(s) 381, 663
Eam1104I CTCTTC 1 cut(s) 1041
EarI CTCTTC 1 cut(s) 1041
EciI GGCGGA 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 1073
Eco130I CCWWGG 2 cut(s) 384, 587
Eco24I GRGCYC 1 cut(s) 1075
Eco32I GATATC 1 cut(s) 240
Eco47I GGWCC 3 cut(s) 154, 314, 1379
Eco53kI GAGCTC 1 cut(s) 1073
Eco57I CTGAAG 1 cut(s) 1065
Eco88I CYCGRG 2 cut(s) 185, 1128
EcoICRI GAGCTC 1 cut(s) 1073
EcoRI GAATTC 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 503, 1170
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 384, 587
EcoT38I GRGCYC 1 cut(s) 1075
ErhI CCWWGG 2 cut(s) 384, 587
FaeI CATG 4 cut(s) 16, 817, 1164, 1373
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FaqI GGGAC 3 cut(s) 133, 548, 731
FatI CATG 4 cut(s) 12, 813, 1160, 1369
FauI CCCGC 1 cut(s) 885
FbaI TGATCA 2 cut(s) 319, 496
Fnu4HI GCNGC 7 cut(s) 25, 96, 99, 381, 866, 1185, 1276
FokI GGATG 9 cut(s) 262, 302, 317, 408, 437, 935, 1067, 1110, 1131
FriOI GRGCYC 1 cut(s) 1075
Fsp4HI GCNGC 7 cut(s) 25, 96, 99, 381, 866, 1185, 1276
FspBI CTAG 3 cut(s) 231, 912, 984
GlaI GCGC 1 cut(s) 1224
GluI GCNGC 7 cut(s) 25, 96, 99, 381, 866, 1185, 1276
GsuI CTGGAG 2 cut(s) 558, 1089
HaeIII GGCC 4 cut(s) 383, 585, 665, 1310
HapII CCGG 2 cut(s) 152, 312
HhaI GCGC 1 cut(s) 1225
Hin1II CATG 4 cut(s) 16, 817, 1164, 1373
Hin6I GCGC 1 cut(s) 1223
HinP1I GCGC 1 cut(s) 1223
HindIII AAGCTT 1 cut(s) 1349
HinfI GANTC 7 cut(s) 117, 222, 400, 1240, 1291, 1334, 1373
HpaII CCGG 2 cut(s) 152, 312
HphI GGTGA 3 cut(s) 219, 908, 1241
Hpy166II GTNNAC 1 cut(s) 1399
Hpy188I TCNGA 5 cut(s) 237, 268, 405, 660, 706
Hpy188III TCNNGA 4 cut(s) 534, 805, 845, 1303
Hpy8I GTNNAC 1 cut(s) 1399
HpyAV CCTTC 6 cut(s) 42, 96, 706, 937, 1300, 1385
HpyCH4III ACNGT 3 cut(s) 555, 888, 1210
HpyCH4V TGCA 9 cut(s) 27, 125, 297, 688, 760, 865, 1150, 1187, 1399
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 107, 380, 826, 1181, 1231
HpyF3I CTNAG 3 cut(s) 420, 725, 1341
Hsp92II CATG 4 cut(s) 16, 817, 1164, 1373
HspAI GCGC 1 cut(s) 1223
KpnI GGTACC 1 cut(s) 972
Ksp22I TGATCA 2 cut(s) 319, 496
Kzo9I GATC 5 cut(s) 319, 496, 619, 655, 1021
LmnI GCTCC 4 cut(s) 115, 137, 1070, 1220
Lsp1109I GCAGC 6 cut(s) 11, 82, 85, 877, 1171, 1262
LweI GCATC 5 cut(s) 280, 295, 502, 913, 1109
MaeI CTAG 3 cut(s) 231, 912, 984
MaeIII GTNAC 2 cut(s) 549, 577
MalI GATC 5 cut(s) 321, 498, 621, 657, 1023
MbiI CCGCTC 1 cut(s) 850
MboI GATC 5 cut(s) 319, 496, 619, 655, 1021
MboII GAAGA 3 cut(s) 249, 985, 1058
MfeI CAATTG 1 cut(s) 1188
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 2 cut(s) 1075, 1401
MluCI AATT 7 cut(s) 485, 750, 781, 790, 871, 989, 1188
MnlI CCTC 9 cut(s) 100, 123, 209, 212, 1042, 1082, 1207, 1241, 1309
MseI TTAA 4 cut(s) 465, 1077, 1202, 1347
MslI CAYNNNNRTG 2 cut(s) 477, 921
MspI CCGG 2 cut(s) 152, 312
MspR9I CCNGG 3 cut(s) 152, 505, 1172
MunI CAATTG 1 cut(s) 1188
Mva1269I GAATGC 1 cut(s) 762
MvaI CCWGG 2 cut(s) 505, 1172
MwoI GCNNNNNNNGC 6 cut(s) 24, 107, 380, 826, 1181, 1231
NciI CCSGG 1 cut(s) 152
NdeII GATC 5 cut(s) 319, 496, 619, 655, 1021
NlaIII CATG 4 cut(s) 16, 817, 1164, 1373
NlaIV GGNNCC 3 cut(s) 111, 156, 970
NmeAIII GCCGAG 1 cut(s) 24
NspI RCATGY 1 cut(s) 1164
PaeI GCATGC 1 cut(s) 1164
PctI GAATGC 1 cut(s) 762
PfeI GAWTC 7 cut(s) 117, 222, 400, 1240, 1291, 1334, 1373
PflMI CCANNNNNTGG 2 cut(s) 285, 581
PkrI GCNGC 7 cut(s) 26, 97, 100, 382, 867, 1186, 1277
PsiI TTATAA 2 cut(s) 327, 786
Psp124BI GAGCTC 1 cut(s) 1075
Psp6I CCWGG 2 cut(s) 503, 1170
PspGI CCWGG 2 cut(s) 503, 1170
PspN4I GGNNCC 3 cut(s) 111, 156, 970
PspPI GGNCC 4 cut(s) 154, 314, 584, 1379
PstI CTGCAG 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 6 cut(s) 600, 671, 764, 970, 977, 1029
RsaNI GTAC 6 cut(s) 599, 670, 763, 969, 976, 1028
RseI CAYNNNNRTG 2 cut(s) 477, 921
SacI GAGCTC 1 cut(s) 1075
SaqAI TTAA 4 cut(s) 465, 1077, 1202, 1347
SatI GCNGC 7 cut(s) 25, 96, 99, 381, 866, 1185, 1276
Sau3AI GATC 5 cut(s) 319, 496, 619, 655, 1021
Sau96I GGNCC 4 cut(s) 154, 314, 584, 1379
ScrFI CCNGG 3 cut(s) 152, 505, 1172
SduI GDGCHC 2 cut(s) 1075, 1401
SfaNI GCATC 5 cut(s) 280, 295, 502, 913, 1109
SfcI CTRYAG 2 cut(s) 295, 743
SinI GGWCC 3 cut(s) 154, 314, 1379
SmiMI CAYNNNNRTG 2 cut(s) 477, 921
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
SphI GCATGC 1 cut(s) 1164
Sse9I AATT 7 cut(s) 485, 750, 781, 790, 871, 989, 1188
SsiI CCGC 6 cut(s) 48, 380, 829, 850, 892, 943
SspI AATATT 1 cut(s) 838
SspMI CTAG 3 cut(s) 231, 912, 984
SstI GAGCTC 1 cut(s) 1075
StyD4I CCNGG 3 cut(s) 150, 503, 1170
StyI CCWWGG 2 cut(s) 384, 587
TaaI ACNGT 3 cut(s) 555, 888, 1210
TaqI TCGA 4 cut(s) 80, 115, 533, 1197
TasI AATT 7 cut(s) 485, 750, 781, 790, 871, 989, 1188
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 7 cut(s) 117, 222, 400, 1240, 1291, 1334, 1373
Tru1I TTAA 4 cut(s) 465, 1077, 1202, 1347
Tru9I TTAA 4 cut(s) 465, 1077, 1202, 1347
TscAI CASTG 7 cut(s) 127, 286, 560, 690, 923, 958, 1215
TseI GCWGC 6 cut(s) 24, 95, 98, 865, 1184, 1275
TspDTI ATGAA 7 cut(s) 441, 669, 830, 896, 915, 1304, 1373
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 7 cut(s) 127, 286, 560, 690, 923, 958, 1215
Van91I CCANNNNNTGG 2 cut(s) 285, 581
VneI GTGCAC 1 cut(s) 1397
VpaK11BI GGWCC 3 cut(s) 154, 314, 1379
XapI RAATTY 4 cut(s) 485, 790, 871, 989
XceI RCATGY 1 cut(s) 1164
XspI CTAG 3 cut(s) 231, 912, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.