Rh7AG333000

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006734
Physical Location & Seq
Reverse (-)
38421070 .. 38429309
8240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG333000.1

Sequence Viewer

Length: 1137 bp
ATGGCAGTAGCAATGAGTTGCTACTGCTGCAGCAAGCCTTCCCCATTTCTGGGTCGATACCCAACTCGTTTTCATTTGGGGAAATCAAAACCTGGACAAGTTGCTGTTCAGGCTCCTAGAATTAGTGCATTATTTTGGGGAGCAAAAAAGTCCCCGGAGCCAAAAGAAATAGAGACCAATCTTTCACTTGGGGAATTCACTTTGACAGGCCCAGAGGGAGGAATCTCAGAGGGGAAGCCTAGTAAGATATCGGTTTCAGTCATTTCTTCAATCTCTGAGGTCTCATCCACTGACTGGGATGCGTGCAGTTTGGATGCTACCGGCCCTGATAAATATAACCCATTTCTTACTCATGCTTTTCTTTCAAGCTTGGAACACTCGGGTTCTGCAGTCAAGGAAACAGGATGGATTCCAAGCCATATCGTTGCCAAGGATGCAAATGAAAATACTTTGGGTGTTGTTCCACTTTATCTTAAAAGTCATTCTTATGGTGAATTTGTTTTTGATCATTCCTGGGCTGATGCACATTATAGTTTTGGGTCAAGATATTATCCAAAGTTACAATGTTGTGTCCCTTTTACTCCAGTAACTGGCCCAAGGATTTTAGTACGGAATACCTTGTTCAAAGATCAAGTTTTTGACATCATAGTTTCTGCTCTTAAGGATCTGACGGCCAAGTACCAGATTTCATCACTGCACATTACCTTCCCATCTGAAAAGGAGTGGGACAAACTGAGTGAAAAGGGATTTCTACAAAGAATTGGAATGCAGTACCATTGGAAAAATCGTAATTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGGAAGAAGATTTTGCAGCAGAATTTGACTATGAAACGGTTGCAAGGCGATGAAATAAAGGCTAGCCACTGGGATGCCTTCTATAACTTCTACCGCAACACAACTGACAACAAGTTCGTTCCTTATAAATCTCTTATGTTTGTTTGTATTTTATCCTTTTTTTCTTCTTCTTTTTTTGCTCCTCCTGAAGAAGAGATCTCTTATGTTTTACATTGCAAGATAATTTCCACCGCTAGGTTTTATGCTTTATATTGTTTTGACAACCTGTTACAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

378

Amino Acids

43.13

Weight (kDa)

8.86

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FemAB_like PF04339 90 - 324 9.5e-91 Peptidogalycan biosysnthesis/recognition
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 795, 984
AccB7I CCANNNNNTGG 2 cut(s) 294, 590
AccBSI CCGCTC 1 cut(s) 859
AciI CCGC 3 cut(s) 859, 952, 1089
AclWI GGATC 1 cut(s) 672
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 4 cut(s) 194, 494, 799, 880
AcuI CTGAAG 1 cut(s) 1065
AfaI GTAC 3 cut(s) 609, 680, 773
AfiI CCNNNNNNNGG 6 cut(s) 49, 50, 218, 294, 590, 1092
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 3 cut(s) 270, 366, 625
AjnI CCWGG 2 cut(s) 91, 512
AluBI AGCT 1 cut(s) 369
AluI AGCT 1 cut(s) 369
Alw26I GTCTC 2 cut(s) 167, 286
AlwI GGATC 1 cut(s) 672
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 4 cut(s) 208, 322, 592, 672
ApeKI GCWGC 3 cut(s) 27, 30, 874
ApoI RAATTY 4 cut(s) 194, 494, 799, 880
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
AspS9I GGNCC 3 cut(s) 209, 323, 593
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 503
AsuNHI GCTAGC 1 cut(s) 920
AvaI CYCGRG 1 cut(s) 379
BbvI GCAGC 3 cut(s) 14, 42, 886
BccI CCATC 3 cut(s) 399, 718, 811
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 2 cut(s) 93, 514
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 167, 286
BfaI CTAG 4 cut(s) 117, 240, 921, 1092
BfmI CTRYAG 2 cut(s) 28, 387
BfrI CTTAAG 1 cut(s) 659
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 3 cut(s) 28, 31, 875
BlsI GCNGC 3 cut(s) 29, 32, 876
Bme1390I CCNGG 3 cut(s) 93, 155, 514
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 3 cut(s) 209, 323, 593
BmiI GGNNCC 2 cut(s) 114, 159
BmrFI CCNGG 3 cut(s) 93, 155, 514
BmrI ACTGGG 2 cut(s) 304, 937
BmsI GCATC 5 cut(s) 289, 304, 424, 511, 922
BmtI GCTAGC 1 cut(s) 924
BmuI ACTGGG 2 cut(s) 304, 937
BpmI CTGGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 155
BsaI GGTCTC 2 cut(s) 167, 286
BsaJI CCNNGG 4 cut(s) 153, 429, 513, 596
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 50, 218, 294, 590, 1092
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 4 cut(s) 299, 584, 595, 932
Bse3DI GCAATG 2 cut(s) 18, 1069
BseBI CCWGG 2 cut(s) 93, 514
BseDI CCNNGG 4 cut(s) 153, 429, 513, 596
BseGI GGATG 6 cut(s) 284, 304, 319, 410, 439, 937
BseLI CCNNNNNNNGG 6 cut(s) 49, 50, 218, 294, 590, 1092
BseMI GCAATG 2 cut(s) 18, 1069
BseMII CTCAG 3 cut(s) 240, 267, 725
BseNI ACTGG 4 cut(s) 299, 584, 595, 932
BseRI GAGGAG 1 cut(s) 1029
BseXI GCAGC 3 cut(s) 14, 42, 886
BsgI GTGCAG 2 cut(s) 325, 680
BshFI GGCC 4 cut(s) 210, 324, 594, 674
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 2 cut(s) 155, 321
BslFI GGGAC 3 cut(s) 136, 557, 740
BslI CCNNNNNNNGG 6 cut(s) 49, 50, 218, 294, 590, 1092
BsmAI GTCTC 2 cut(s) 167, 286
BsmFI GGGAC 3 cut(s) 136, 557, 740
BsmI GAATGC 1 cut(s) 771
BsnI GGCC 4 cut(s) 210, 324, 594, 674
Bso31I GGTCTC 2 cut(s) 167, 286
BsoBI CYCGRG 1 cut(s) 379
Bsp143I GATC 4 cut(s) 505, 628, 664, 1053
BspACI CCGC 3 cut(s) 859, 952, 1089
BspANI GGCC 4 cut(s) 210, 324, 594, 674
BspCNI CTCAG 3 cut(s) 239, 268, 726
BspLI GGNNCC 2 cut(s) 114, 159
BspMAI CTGCAG 2 cut(s) 32, 391
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 1 cut(s) 672
BspTI CTTAAG 1 cut(s) 659
BspTNI GGTCTC 2 cut(s) 167, 286
BsrBI CCGCTC 1 cut(s) 859
BsrDI GCAATG 2 cut(s) 18, 1069
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 4 cut(s) 299, 584, 595, 932
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 153, 429, 513, 596
BssMI GATC 4 cut(s) 505, 628, 664, 1053
BssT1I CCWWGG 2 cut(s) 429, 596
Bst2UI CCWGG 2 cut(s) 93, 514
Bst4CI ACNGT 1 cut(s) 897
Bst6I CTCTTC 1 cut(s) 1044
BstAFI CTTAAG 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 35, 304, 922
BstDEI CTNAG 3 cut(s) 226, 276, 734
BstF5I GGATG 6 cut(s) 284, 304, 319, 410, 439, 937
BstKTI GATC 4 cut(s) 508, 631, 667, 1056
BstMAI GTCTC 2 cut(s) 167, 286
BstMBI GATC 4 cut(s) 505, 628, 664, 1053
BstMWI GCNNNNNNNGC 3 cut(s) 27, 110, 434
BstNI CCWGG 2 cut(s) 93, 514
BstSCI CCNGG 3 cut(s) 91, 153, 512
BstSFI CTRYAG 2 cut(s) 28, 387
BstV1I GCAGC 3 cut(s) 14, 42, 886
BstX2I RGATCY 2 cut(s) 664, 1053
BstYI RGATCY 2 cut(s) 664, 1053
BsuRI GGCC 4 cut(s) 210, 324, 594, 674
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 6 cut(s) 284, 304, 319, 410, 439, 937
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 3 cut(s) 288, 692, 925
Cac8I GCNNGC 3 cut(s) 35, 304, 922
CaiI CAGNNNCTG 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 209, 323, 593
Csp6I GTAC 3 cut(s) 608, 679, 772
CviAII CATG 2 cut(s) 353, 823
CviQI GTAC 3 cut(s) 608, 679, 772
DdeI CTNAG 3 cut(s) 226, 276, 734
DpnI GATC 4 cut(s) 507, 630, 666, 1055
DpnII GATC 4 cut(s) 505, 628, 664, 1053
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 1044
Eco130I CCWWGG 2 cut(s) 429, 596
Eco31I GGTCTC 2 cut(s) 167, 286
Eco32I GATATC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 1065
Eco88I CYCGRG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 91, 512
EcoRV GATATC 1 cut(s) 249
EcoT14I CCWWGG 2 cut(s) 429, 596
ErhI CCWWGG 2 cut(s) 429, 596
FaeI CATG 2 cut(s) 356, 826
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FaqI GGGAC 3 cut(s) 136, 557, 740
FatI CATG 2 cut(s) 352, 822
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 3 cut(s) 28, 31, 875
FokI GGATG 6 cut(s) 271, 311, 326, 417, 446, 944
Fsp4HI GCNGC 3 cut(s) 28, 31, 875
FspBI CTAG 4 cut(s) 117, 240, 921, 1092
GluI GCNGC 3 cut(s) 28, 31, 875
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 4 cut(s) 210, 324, 594, 674
HapII CCGG 2 cut(s) 155, 321
Hin1II CATG 2 cut(s) 356, 826
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 2 cut(s) 222, 409
HpaII CCGG 2 cut(s) 155, 321
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 4 cut(s) 229, 277, 669, 715
Hpy188III TCNNGA 4 cut(s) 543, 814, 854, 1043
HpyAV CCTTC 3 cut(s) 48, 715, 946
HpyCH4III ACNGT 1 cut(s) 897
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 110, 434
HpyF3I CTNAG 3 cut(s) 226, 276, 734
Hsp92II CATG 2 cut(s) 356, 826
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 4 cut(s) 505, 628, 664, 1053
LmnI GCTCC 4 cut(s) 118, 140, 157, 1042
Lsp1109I GCAGC 3 cut(s) 14, 42, 886
LweI GCATC 5 cut(s) 289, 304, 424, 511, 922
MaeI CTAG 4 cut(s) 117, 240, 921, 1092
MaeIII GTNAC 3 cut(s) 558, 586, 1125
MalI GATC 4 cut(s) 507, 630, 666, 1055
MbiI CCGCTC 1 cut(s) 859
MboI GATC 4 cut(s) 505, 628, 664, 1053
MboII GAAGA 7 cut(s) 258, 874, 877, 1014, 1017, 1058, 1061
MflI RGATCY 2 cut(s) 664, 1053
MluCI AATT 8 cut(s) 120, 194, 494, 759, 790, 799, 880, 1080
MnlI CCTC 5 cut(s) 208, 212, 223, 271, 1050
MseI TTAA 2 cut(s) 474, 660
MslI CAYNNNNRTG 2 cut(s) 486, 930
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 2 cut(s) 155, 321
MspR9I CCNGG 3 cut(s) 93, 155, 514
Mva1269I GAATGC 1 cut(s) 771
MvaI CCWGG 2 cut(s) 93, 514
MwoI GCNNNNNNNGC 3 cut(s) 27, 110, 434
NciI CCSGG 1 cut(s) 155
NdeII GATC 4 cut(s) 505, 628, 664, 1053
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 2 cut(s) 356, 826
NlaIV GGNNCC 2 cut(s) 114, 159
PctI GAATGC 1 cut(s) 771
PfeI GAWTC 2 cut(s) 222, 409
PflMI CCANNNNNTGG 2 cut(s) 294, 590
PkrI GCNGC 3 cut(s) 29, 32, 876
PsiI TTATAA 2 cut(s) 795, 984
Psp6I CCWGG 2 cut(s) 91, 512
PspGI CCWGG 2 cut(s) 91, 512
PspN4I GGNNCC 2 cut(s) 114, 159
PspPI GGNCC 3 cut(s) 209, 323, 593
PstI CTGCAG 2 cut(s) 32, 391
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 2 cut(s) 664, 1053
RsaI GTAC 3 cut(s) 609, 680, 773
RsaNI GTAC 3 cut(s) 608, 679, 772
RseI CAYNNNNRTG 2 cut(s) 486, 930
SaqAI TTAA 2 cut(s) 474, 660
SatI GCNGC 3 cut(s) 28, 31, 875
Sau3AI GATC 4 cut(s) 505, 628, 664, 1053
Sau96I GGNCC 3 cut(s) 209, 323, 593
ScrFI CCNGG 3 cut(s) 93, 155, 514
SetI ASST 7 cut(s) 94, 282, 371, 620, 707, 1097, 1125
SfaNI GCATC 5 cut(s) 289, 304, 424, 511, 922
SfcI CTRYAG 2 cut(s) 28, 387
SmiMI CAYNNNNRTG 2 cut(s) 486, 930
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 8 cut(s) 120, 194, 494, 759, 790, 799, 880, 1080
SsiI CCGC 3 cut(s) 859, 952, 1089
SspI AATATT 1 cut(s) 847
SspMI CTAG 4 cut(s) 117, 240, 921, 1092
StyD4I CCNGG 3 cut(s) 91, 153, 512
StyI CCWWGG 2 cut(s) 429, 596
TaaI ACNGT 1 cut(s) 897
TaqI TCGA 1 cut(s) 55
TasI AATT 8 cut(s) 120, 194, 494, 759, 790, 799, 880, 1080
TfiI GAWTC 2 cut(s) 222, 409
Tru1I TTAA 2 cut(s) 474, 660
Tru9I TTAA 2 cut(s) 474, 660
TscAI CASTG 3 cut(s) 295, 699, 932
TseI GCWGC 3 cut(s) 27, 30, 874
TspDTI ATGAA 6 cut(s) 62, 456, 678, 839, 905, 924
TspGWI ACGGA 1 cut(s) 625
TspRI CASTG 3 cut(s) 295, 699, 932
Van91I CCANNNNNTGG 2 cut(s) 294, 590
Vha464I CTTAAG 1 cut(s) 659
XapI RAATTY 4 cut(s) 194, 494, 799, 880
XspI CTAG 4 cut(s) 117, 240, 921, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.