pycom08g21430

Peptidogalycan biosysnthesis/recognition

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
20901018 .. 20906464
5447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g21430.12

Sequence Viewer

Length: 1413 bp
ATGGCAGTCGCTGCAATGAGCTACTGCAGGCCTTCCCCATTTCTGGGCAAATACCCACCTCATTTTCACTTGGGAAAATCGCAACCCCTGAAAGCTGGTCAGGCATCGAGAATTAGTGCACTATTTTGGGGAGCCAGGAAGTCTGCAGAGCCACAAGAAATAGAGATAAGTCTTTCACTTGGGGATTTCACTTTGACAGCTCCAGGTTCACAGAAAGAGGGAATCTCAGGAGTGAAACCGAAAAAGATATCAGTTTCGGTCATTTCATCAATCTCTGAGGTCTCATCCACTGAGTGGGATGCATGCGCTATCGATGTTACAGGCCCTGAAAATTTTAATCCATTTCTTACTCATGCTTTTCTTTCAAGCTTGGAAGAGTCTGCTTCCGCCGTCAGGGAAACCGGATGGACTCCACGCCATGTCATTGCTAAGGATGAAAGTGAAAGTATTGTAGGTGTTGTTCCACTCTATCTTAAAAGTCATTCCTATGGTGAATTTGTTTTTGATCATTCTTGGGCTGATGCATATTATAGTTTTGGGGGGAGGTATTATCCAAAATTGCAGTCTTGTGTACCTTTTACTCCAGTAACTGGCCCCAGGATTTTAATTCGTAATACGTCATTCAAAGATCAAGTTTTTGACATCATAGTATCCGCTTTGAAGGAGCTGACTGCCAAGTACCGGCTCTCATCACTGCACATTACCTTCCCATCTGAAACGGAGTGGAACAAACTGAGTGAAAGAGGTTTTCTTCAGAGAACTGGAATGCAGTACCATTGGAAAAACCACAACTACAAAAATTTTGACGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATACGTCAAGAGCGCAAAAAGATTGTGCAGCAGAATTTGACTATGAAACGGCTGCGGGGTAATGAAATAAAGGCTAGGCACTGGGATTCGTTCTATAACTTCTACCGGAACACCACTGATAACAAGTGGGGTACTCCATACCTGACCAGGGAGTTTTTTCACCAAATGGGCGAAAAGATGGGAGACCAGGTACTACTTGTTGTTGCTGAAGAAGGGGATGAGCTAGTTGCTGGAGCTCTGAATCTTATAGGAGGAGATACGTTATTTGGACGCCTATGGGGAAGTCATCCAAGAGCTTACTATCCAAGTTTGCATTTTGAAGCATGCTATTACCAGGCAATAGAAGCTGCAATCGAACTTAATCTAAACACAGTAGAGGCAGGAGCTCAGGGCGAACATAAGATTCAGAGAGGTTATCTGCCTGTGACAACCTATAGCTGTCATTACCTGGTGGACGAAGGTTTCAGGAAGGCCATAGAGAACTTTGTAGGGCGTGAATCAACTCAGGTTGAGCTCGTCAAGAAACTAGTACATGATTCTGGTCCTTTCAAGGAAGGTATACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

53.35

Weight (kDa)

8.36

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 294, 590
AccI GTMKAC 1 cut(s) 1405
AciI CCGC 3 cut(s) 387, 654, 901
AcsI RAATTY 4 cut(s) 331, 494, 799, 880
AcuI CTGAAG 2 cut(s) 737, 1074
AcyI GRCGYC 1 cut(s) 1117
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 6 cut(s) 573, 680, 773, 979, 1038, 1377
AfiI CCNNNNNNNGG 7 cut(s) 43, 44, 294, 393, 590, 681, 994
AgsI TTSAA 5 cut(s) 366, 625, 661, 1166, 1396
AhlI ACTAGT 1 cut(s) 1372
AjnI CCWGG 7 cut(s) 134, 202, 596, 992, 1032, 1179, 1293
Alw21I GWGCWC 4 cut(s) 121, 1084, 1234, 1362
Alw26I GTCTC 2 cut(s) 286, 1023
Alw44I GTGCAC 1 cut(s) 117
AlwNI CAGNNNCTG 3 cut(s) 11, 326, 590
AoxI GGCC 4 cut(s) 29, 322, 592, 1317
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 4 cut(s) 11, 874, 898, 1193
ApoI RAATTY 4 cut(s) 331, 494, 799, 880
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AspLEI GCGC 2 cut(s) 308, 861
AspS9I GGNCC 3 cut(s) 323, 593, 1388
AsuHPI GGTGA 2 cut(s) 503, 998
AvaII GGWCC 1 cut(s) 1388
BaeGI GKGCMC 1 cut(s) 121
BanII GRGCYC 3 cut(s) 1084, 1234, 1362
Bbv12I GWGCWC 4 cut(s) 121, 1084, 1234, 1362
BbvI GCAGC 3 cut(s) 885, 886, 1180
BccI CCATC 4 cut(s) 399, 718, 811, 1018
BceAI ACGGC 2 cut(s) 374, 911
BciT130I CCWGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
BciVI GTATCC 1 cut(s) 661
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 286, 1023
BcuI ACTAGT 1 cut(s) 1372
BfaI CTAG 3 cut(s) 921, 1070, 1373
BfmI CTRYAG 3 cut(s) 25, 144, 1279
BfuI GTATCC 1 cut(s) 661
BisI GCNGC 4 cut(s) 12, 875, 899, 1194
BlsI GCNGC 4 cut(s) 13, 876, 900, 1195
Bme1390I CCNGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
Bme18I GGWCC 1 cut(s) 1388
BmgT120I GGNCC 3 cut(s) 323, 593, 1388
BmiI GGNNCC 2 cut(s) 133, 595
BmrFI CCNGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
BmrI ACTGGG 1 cut(s) 937
BmsI GCATC 3 cut(s) 113, 289, 511
BmuI ACTGGG 1 cut(s) 937
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 3 cut(s) 186, 567, 1098
Bpu10I CCTNAGC 2 cut(s) 429, 1233
Bsa29I ATCGAT 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 1117
BsaI GGTCTC 2 cut(s) 286, 1023
BsaJI CCNNGG 2 cut(s) 596, 993
BsaWI WCCGGW 2 cut(s) 401, 951
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 44, 294, 393, 590, 681, 994
Bse118I RCCGGY 1 cut(s) 681
Bse1I ACTGG 4 cut(s) 584, 595, 766, 932
Bse3DI GCAATG 2 cut(s) 21, 423
BseBI CCWGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 596, 993
BseGI GGATG 6 cut(s) 284, 304, 410, 439, 1069, 1132
BseLI CCNNNNNNNGG 7 cut(s) 43, 44, 294, 393, 590, 681, 994
BseMI GCAATG 2 cut(s) 21, 423
BseMII CTCAG 6 cut(s) 240, 267, 282, 725, 1247, 1364
BseNI ACTGG 4 cut(s) 584, 595, 766, 932
BseRI GAGGAG 1 cut(s) 1113
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 3 cut(s) 885, 886, 1180
BsgI GTGCAG 2 cut(s) 680, 893
BshFI GGCC 4 cut(s) 31, 324, 594, 1319
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 4 cut(s) 121, 1084, 1234, 1362
BsiSI CCGG 3 cut(s) 402, 682, 952
BslI CCNNNNNNNGG 7 cut(s) 43, 44, 294, 393, 590, 681, 994
BsmAI GTCTC 2 cut(s) 286, 1023
BsmI GAATGC 1 cut(s) 771
BsnI GGCC 4 cut(s) 31, 324, 594, 1319
Bso31I GGTCTC 2 cut(s) 286, 1023
Bsp1286I GDGCHC 4 cut(s) 121, 1084, 1234, 1362
Bsp143I GATC 2 cut(s) 505, 628
BspACI CCGC 3 cut(s) 387, 654, 901
BspANI GGCC 4 cut(s) 31, 324, 594, 1319
BspCNI CTCAG 6 cut(s) 239, 268, 283, 726, 1246, 1363
BspDI ATCGAT 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 133, 595
BspMAI CTGCAG 2 cut(s) 29, 148
BspTNI GGTCTC 2 cut(s) 286, 1023
BsrDI GCAATG 2 cut(s) 21, 423
BsrFI RCCGGY 1 cut(s) 681
BsrI ACTGG 4 cut(s) 584, 595, 766, 932
BssAI RCCGGY 1 cut(s) 681
BssECI CCNNGG 2 cut(s) 596, 993
BssMI GATC 2 cut(s) 505, 628
BssNAI GTATAC 1 cut(s) 1406
BssNI GRCGYC 1 cut(s) 1117
Bst1107I GTATAC 1 cut(s) 1406
Bst2UI CCWGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
Bst4CI ACNGT 1 cut(s) 1219
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 1117
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 29, 304, 1171
BstDEI CTNAG 7 cut(s) 226, 276, 291, 429, 734, 1233, 1350
BstF5I GGATG 6 cut(s) 284, 304, 410, 439, 1069, 1132
BstHHI GCGC 2 cut(s) 308, 861
BstKTI GATC 2 cut(s) 508, 631
BstMAI GTCTC 2 cut(s) 286, 1023
BstMBI GATC 2 cut(s) 505, 628
BstMWI GCNNNNNNNGC 3 cut(s) 11, 101, 1190
BstNI CCWGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
BstNSI RCATGY 2 cut(s) 306, 1173
BstSCI CCNGG 7 cut(s) 134, 202, 596, 992, 1032, 1179, 1293
BstSFI CTRYAG 3 cut(s) 25, 144, 1279
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 3 cut(s) 885, 886, 1180
BstZ17I GTATAC 1 cut(s) 1406
Bsu15I ATCGAT 1 cut(s) 312
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 4 cut(s) 31, 324, 594, 1319
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 6 cut(s) 284, 304, 410, 439, 1069, 1132
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 4 cut(s) 288, 692, 925, 960
Cac8I GCNNGC 3 cut(s) 29, 304, 1171
CaiI CAGNNNCTG 3 cut(s) 11, 326, 590
CfoI GCGC 2 cut(s) 308, 861
Cfr10I RCCGGY 1 cut(s) 681
Cfr13I GGNCC 3 cut(s) 323, 593, 1388
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 1 cut(s) 1125
CsiI ACCWGGT 2 cut(s) 1032, 1293
Csp6I GTAC 6 cut(s) 572, 679, 772, 978, 1037, 1376
CviAII CATG 6 cut(s) 303, 353, 419, 823, 1170, 1379
CviQI GTAC 6 cut(s) 572, 679, 772, 978, 1037, 1376
DdeI CTNAG 7 cut(s) 226, 276, 291, 429, 734, 1233, 1350
DpnI GATC 2 cut(s) 507, 630
DpnII GATC 2 cut(s) 505, 628
DraIII CACNNNGTG 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 376
Ecl136II GAGCTC 3 cut(s) 1082, 1232, 1360
Eco147I AGGCCT 1 cut(s) 31
Eco24I GRGCYC 3 cut(s) 1084, 1234, 1362
Eco31I GGTCTC 2 cut(s) 286, 1023
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 1388
Eco53kI GAGCTC 3 cut(s) 1082, 1232, 1360
Eco57I CTGAAG 2 cut(s) 737, 1074
EcoICRI GAGCTC 3 cut(s) 1082, 1232, 1360
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 7 cut(s) 134, 202, 596, 992, 1032, 1179, 1293
EcoRV GATATC 1 cut(s) 249
EcoT22I ATGCAT 2 cut(s) 304, 526
EcoT38I GRGCYC 3 cut(s) 1084, 1234, 1362
FaeI CATG 6 cut(s) 306, 356, 422, 826, 1173, 1382
FatI CATG 6 cut(s) 302, 352, 418, 822, 1169, 1378
FauI CCCGC 1 cut(s) 894
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 1405
Fnu4HI GCNGC 4 cut(s) 12, 875, 899, 1194
FokI GGATG 6 cut(s) 271, 311, 417, 446, 1076, 1119
FriOI GRGCYC 3 cut(s) 1084, 1234, 1362
Fsp4HI GCNGC 4 cut(s) 12, 875, 899, 1194
FspBI CTAG 3 cut(s) 921, 1070, 1373
GlaI GCGC 2 cut(s) 307, 860
GluI GCNGC 4 cut(s) 12, 875, 899, 1194
GsuI CTGGAG 3 cut(s) 186, 567, 1098
HaeIII GGCC 4 cut(s) 31, 324, 594, 1319
HapII CCGG 3 cut(s) 402, 682, 952
HgaI GACGC 1 cut(s) 1125
HhaI GCGC 2 cut(s) 308, 861
Hin1I GRCGYC 1 cut(s) 1117
Hin1II CATG 6 cut(s) 306, 356, 422, 826, 1173, 1382
Hin6I GCGC 2 cut(s) 306, 859
HinP1I GCGC 2 cut(s) 306, 859
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 8 cut(s) 222, 377, 409, 932, 1087, 1249, 1343, 1382
HpaII CCGG 3 cut(s) 402, 682, 952
HphI GGTGA 2 cut(s) 503, 998
Hpy166II GTNNAC 5 cut(s) 119, 209, 572, 1300, 1406
Hpy188I TCNGA 5 cut(s) 277, 715, 756, 1086, 1254
Hpy188III TCNNGA 6 cut(s) 108, 228, 814, 854, 1312, 1366
Hpy8I GTNNAC 5 cut(s) 119, 209, 572, 1300, 1406
HpyAV CCTTC 7 cut(s) 42, 655, 715, 1052, 1298, 1309, 1394
HpyCH4III ACNGT 1 cut(s) 1219
HpyCH4IV ACGT 3 cut(s) 617, 850, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 101, 1190
HpyF3I CTNAG 7 cut(s) 226, 276, 291, 429, 734, 1233, 1350
HpySE526I ACGT 3 cut(s) 617, 850, 1106
Hsp92I GRCGYC 1 cut(s) 1117
Hsp92II CATG 6 cut(s) 306, 356, 422, 826, 1173, 1382
HspAI GCGC 2 cut(s) 306, 859
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 2 cut(s) 505, 628
LmnI GCTCC 5 cut(s) 131, 205, 664, 1079, 1229
Lsp1109I GCAGC 3 cut(s) 885, 886, 1180
LweI GCATC 3 cut(s) 113, 289, 511
MabI ACCWGGT 2 cut(s) 1032, 1293
MaeI CTAG 3 cut(s) 921, 1070, 1373
MaeII ACGT 3 cut(s) 617, 850, 1106
MaeIII GTNAC 3 cut(s) 316, 586, 1270
MalI GATC 2 cut(s) 507, 630
MboI GATC 2 cut(s) 505, 628
MboII GAAGA 3 cut(s) 386, 743, 1067
MhlI GDGCHC 4 cut(s) 121, 1084, 1234, 1362
MluCI AATT 7 cut(s) 111, 331, 494, 557, 606, 799, 880
MlyI GAGTC 2 cut(s) 386, 403
MnlI CCTC 8 cut(s) 69, 211, 271, 537, 737, 1091, 1216, 1250
Mph1103I ATGCAT 2 cut(s) 304, 526
MseI TTAA 4 cut(s) 336, 474, 605, 1206
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 3 cut(s) 402, 682, 952
MspR9I CCNGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
Mva1269I GAATGC 1 cut(s) 771
MvaI CCWGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
MwoI GCNNNNNNNGC 3 cut(s) 11, 101, 1190
NdeII GATC 2 cut(s) 505, 628
NlaIII CATG 6 cut(s) 306, 356, 422, 826, 1173, 1382
NlaIV GGNNCC 2 cut(s) 133, 595
NmuCI GTSAC 1 cut(s) 1270
NsiI ATGCAT 2 cut(s) 304, 526
NspI RCATGY 2 cut(s) 306, 1173
PaeI GCATGC 2 cut(s) 306, 1173
PceI AGGCCT 1 cut(s) 31
PctI GAATGC 1 cut(s) 771
PfeI GAWTC 6 cut(s) 222, 932, 1087, 1249, 1343, 1382
PflMI CCANNNNNTGG 2 cut(s) 294, 590
PkrI GCNGC 4 cut(s) 13, 876, 900, 1195
PleI GAGTC 2 cut(s) 385, 403
PpsI GAGTC 2 cut(s) 385, 403
Psp124BI GAGCTC 3 cut(s) 1084, 1234, 1362
Psp6I CCWGG 7 cut(s) 134, 202, 596, 992, 1032, 1179, 1293
PspGI CCWGG 7 cut(s) 134, 202, 596, 992, 1032, 1179, 1293
PspN4I GGNNCC 2 cut(s) 133, 595
PspPI GGNCC 3 cut(s) 323, 593, 1388
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
PstI CTGCAG 2 cut(s) 29, 148
PstNI CAGNNNCTG 3 cut(s) 11, 326, 590
RsaI GTAC 6 cut(s) 573, 680, 773, 979, 1038, 1377
RsaNI GTAC 6 cut(s) 572, 679, 772, 978, 1037, 1376
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 3 cut(s) 1084, 1234, 1362
SaqAI TTAA 4 cut(s) 336, 474, 605, 1206
SatI GCNGC 4 cut(s) 12, 875, 899, 1194
Sau3AI GATC 2 cut(s) 505, 628
Sau96I GGNCC 3 cut(s) 323, 593, 1388
SchI GAGTC 2 cut(s) 386, 403
ScrFI CCNGG 7 cut(s) 136, 204, 598, 994, 1034, 1181, 1295
SduI GDGCHC 4 cut(s) 121, 1084, 1234, 1362
SexAI ACCWGGT 2 cut(s) 1032, 1293
SfaNI GCATC 3 cut(s) 113, 289, 511
SfcI CTRYAG 3 cut(s) 25, 144, 1279
SinI GGWCC 1 cut(s) 1388
SmiMI CAYNNNNRTG 1 cut(s) 486
SpeI ACTAGT 1 cut(s) 1372
SphI GCATGC 2 cut(s) 306, 1173
Sse9I AATT 7 cut(s) 111, 331, 494, 557, 606, 799, 880
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 3 cut(s) 387, 654, 901
SspMI CTAG 3 cut(s) 921, 1070, 1373
SstI GAGCTC 3 cut(s) 1084, 1234, 1362
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 7 cut(s) 134, 202, 596, 992, 1032, 1179, 1293
TaaI ACNGT 1 cut(s) 1219
TaiI ACGT 3 cut(s) 620, 853, 1109
TaqI TCGA 3 cut(s) 107, 312, 1200
TaqII GACCGA 1 cut(s) 247
TasI AATT 7 cut(s) 111, 331, 494, 557, 606, 799, 880
TatI WGTACW 1 cut(s) 1375
TfiI GAWTC 6 cut(s) 222, 932, 1087, 1249, 1343, 1382
Tru1I TTAA 4 cut(s) 336, 474, 605, 1206
Tru9I TTAA 4 cut(s) 336, 474, 605, 1206
TscAI CASTG 4 cut(s) 295, 699, 932, 967
TseFI GTSAC 1 cut(s) 1270
TseI GCWGC 4 cut(s) 11, 874, 898, 1193
Tsp45I GTSAC 1 cut(s) 1270
TspDTI ATGAA 5 cut(s) 255, 450, 839, 905, 924
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 4 cut(s) 295, 699, 932, 967
Van91I CCANNNNNTGG 2 cut(s) 294, 590
VneI GTGCAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 1388
XapI RAATTY 4 cut(s) 331, 494, 799, 880
XceI RCATGY 2 cut(s) 306, 1173
XmiI GTMKAC 1 cut(s) 1405
XspI CTAG 3 cut(s) 921, 1070, 1373
Zsp2I ATGCAT 2 cut(s) 304, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.