Rw7G028080

Peptidogalycan biosysnthesis/recognition

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
37430488 .. 37438219
7732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028080.1

Sequence Viewer

Length: 1386 bp
ATGGCAGTAGCAATGAGCTACTGCTGCAGCAAGCCTTCCCCATTTCTGGGTCGATACCCAACTCGTTTTCATTTGTTGCTTTCAGGCGCTAGAATTAGTGCATTATTTTGGGGGGCAAAAAAGTCCCCGGAGCCAAAAGAAATAGAGACCAATCTTTCACTTGGGGAATTCACTTTGACAGGCCCAGAGGGAGGAATCTCAGAGGGGAAGCCTAGTAAGATATCGGTTTCAGTCATTTCTTCAATCTCTGAGGTCTCATCCTCTGACTGGGATGCGTGCAGTTTGGATGCTACCGGCCCTGATAAATATAACCCATTTCTTACTCATGCTTTTCTTTCAAGCTTGGAACACTCGGGTTCTGCAGTCAAGGAAACAGGATGGATTCCAAGCCATATCGTTGCCAAGGATGCAAATGAAAATACTTTAGGTGTTGTTCCACTTTATCTTAAAAGTCATTCTTATGGTGAATTTGTTTTTGATCATTCCTGGGCTGATGCATACTATAGTTTTGGGTCAAGATATTATCCAAAGTTACAATGTTGTGTCCCTTTTACTCCAGTAACTGGCCCAAGGATTTTAGTACGGAATACCTTGTTCAAAGATCAAGTTTTTGACATCATAGTTTCTGCACTCAAGGATCTGACGGCCAAGTACCAGATTTCATCACTGCACATTACCTTCCCATCTGAAAAGGAGTGGGACAAACTGAGTGAAAAGGGATTTCTACAAAGAATTGGAATGCAGTACCATTGGAAAAATCGTAATTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGGAAGAAGATTTTGCAGCAGAATTTGACTATGAAACGGTTGCAAGGCGATGAAATAAAGGCTAGACACTGGGATGCCTTCTATAACTTCTACCGCAACACCACTGACAACAAGTGGGGTACCCCGTACCTGACTAGGGAATTCTTTCACAACATAGGGTCAAAGATGGGAGATCAGGTACTCCTTGTTGTTGCTGAAGAGGGGGATGAGCTTGTTGCTGGAGCTCTTAATCTTATTGGAGGAGACACGTTATTTGGACGCCTATGGGGATGCCATCCCCGAGCTTATTATCCAAGTTTGCATTTTGAAGCATGCTATTACCAGGCAATAGAAGCTGCAATCGAACTTGATTTAAGCACAGTGGAGGCAGGAGCGCAGGGTGAGCATAAGATTCAGAGGGGTTATATGCCTGTGGCCACGTATAGCTGCCATTACCTGACTAATCAAAGTTTCAGGAAGGCCATAGAGGACTTTCTTGTGCGTGAATCAACTCAGGTTAAGCTTGTGATGAAACTACTGCATGATTCTGGTCCTTTTAAGGAAGGTGTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

52.34

Weight (kDa)

7.99

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FemAB_like PF04339 81 - 458 4.1e-155 Peptidogalycan biosysnthesis/recognition
Acetyltransf_6 PF13480 269 - 404 4.9e-13 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 768
Acc65I GGTACC 1 cut(s) 950
AccB1I GGYRCC 1 cut(s) 950
AccB7I CCANNNNNTGG 1 cut(s) 563
AccBSI CCGCTC 1 cut(s) 832
AciI CCGC 2 cut(s) 832, 925
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 2 cut(s) 645, 1245
AcsI RAATTY 5 cut(s) 167, 467, 772, 853, 971
AcuI CTGAAG 1 cut(s) 1047
AcyI GRCGYC 1 cut(s) 1090
AfaI GTAC 7 cut(s) 582, 653, 746, 952, 959, 1011, 1380
AfiI CCNNNNNNNGG 6 cut(s) 46, 47, 191, 267, 563, 967
AflIII ACRYGT 1 cut(s) 1077
AgsI TTSAA 4 cut(s) 243, 339, 598, 1139
AjnI CCWGG 2 cut(s) 485, 1152
AluBI AGCT 8 cut(s) 18, 342, 1042, 1055, 1115, 1166, 1257, 1333
AluI AGCT 8 cut(s) 18, 342, 1042, 1055, 1115, 1166, 1257, 1333
Alw21I GWGCWC 1 cut(s) 1057
Alw26I GTCTC 3 cut(s) 140, 259, 1068
AlwI GGATC 1 cut(s) 645
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 352, 1110
AoxI GGCC 6 cut(s) 181, 295, 565, 645, 1245, 1290
ApeKI GCWGC 5 cut(s) 24, 27, 847, 1166, 1257
ApoI RAATTY 5 cut(s) 167, 467, 772, 853, 971
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
Asp700I GAANNNNTTC 1 cut(s) 975
Asp718I GGTACC 1 cut(s) 950
AspLEI GCGC 2 cut(s) 89, 1207
AspS9I GGNCC 4 cut(s) 182, 296, 566, 1361
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 476, 1223
AvaI CYCGRG 2 cut(s) 352, 1110
AvaII GGWCC 1 cut(s) 1361
BalI TGGCCA 1 cut(s) 1247
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 1057
Bbv12I GWGCWC 1 cut(s) 1057
BbvI GCAGC 5 cut(s) 11, 39, 859, 1153, 1244
BccI CCATC 5 cut(s) 372, 691, 784, 991, 1113
BceAI ACGGC 1 cut(s) 660
BciT130I CCWGG 2 cut(s) 487, 1154
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 3 cut(s) 140, 259, 1068
BfaI CTAG 4 cut(s) 90, 213, 894, 966
BfmI CTRYAG 3 cut(s) 25, 360, 502
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 5 cut(s) 25, 28, 848, 1167, 1258
BlsI GCNGC 5 cut(s) 26, 29, 849, 1168, 1259
Bme1390I CCNGG 3 cut(s) 128, 487, 1154
Bme18I GGWCC 1 cut(s) 1361
BmeT110I CYCGRG 2 cut(s) 352, 1110
BmgT120I GGNCC 4 cut(s) 182, 296, 566, 1361
BmiI GGNNCC 2 cut(s) 132, 952
BmrFI CCNGG 3 cut(s) 128, 487, 1154
BmrI ACTGGG 2 cut(s) 277, 910
BmsI GCATC 6 cut(s) 262, 277, 397, 484, 895, 1091
BmuI ACTGGG 2 cut(s) 277, 910
BpmI CTGGAG 2 cut(s) 540, 1071
BpuEI CTTGAG 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 1251
BsaHI GRCGYC 1 cut(s) 1090
BsaI GGTCTC 2 cut(s) 140, 259
BsaJI CCNNGG 4 cut(s) 126, 402, 486, 569
BsaXI ACNNNNNCTCC 2 cut(s) 993, 1023
Bsc4I CCNNNNNNNGG 6 cut(s) 46, 47, 191, 267, 563, 967
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 4 cut(s) 272, 557, 568, 905
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 487, 1154
BseDI CCNNGG 4 cut(s) 126, 402, 486, 569
BseGI GGATG 9 cut(s) 257, 277, 292, 383, 412, 910, 1042, 1105, 1106
BseLI CCNNNNNNNGG 6 cut(s) 46, 47, 191, 267, 563, 967
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 4 cut(s) 213, 240, 698, 1337
BseNI ACTGG 4 cut(s) 272, 557, 568, 905
BseRI GAGGAG 1 cut(s) 1086
BseXI GCAGC 5 cut(s) 11, 39, 859, 1153, 1244
BsgI GTGCAG 3 cut(s) 298, 612, 653
BshFI GGCC 6 cut(s) 183, 297, 567, 647, 1247, 1292
BshNI GGYRCC 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 1057
BsiHKCI CYCGRG 2 cut(s) 352, 1110
BsiSI CCGG 2 cut(s) 128, 294
BslFI GGGAC 3 cut(s) 109, 530, 713
BslI CCNNNNNNNGG 6 cut(s) 46, 47, 191, 267, 563, 967
BsmAI GTCTC 3 cut(s) 140, 259, 1068
BsmFI GGGAC 3 cut(s) 109, 530, 713
BsmI GAATGC 1 cut(s) 744
BsnI GGCC 6 cut(s) 183, 297, 567, 647, 1247, 1292
Bso31I GGTCTC 2 cut(s) 140, 259
BsoBI CYCGRG 2 cut(s) 352, 1110
Bsp1286I GDGCHC 1 cut(s) 1057
Bsp1407I TGTACA 1 cut(s) 1378
Bsp143I GATC 4 cut(s) 478, 601, 637, 1003
BspACI CCGC 2 cut(s) 832, 925
BspANI GGCC 6 cut(s) 183, 297, 567, 647, 1247, 1292
BspCNI CTCAG 4 cut(s) 212, 241, 699, 1336
BspLI GGNNCC 2 cut(s) 132, 952
BspMAI CTGCAG 2 cut(s) 29, 364
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 950
BspTNI GGTCTC 2 cut(s) 140, 259
BsrBI CCGCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 1378
BsrI ACTGG 4 cut(s) 272, 557, 568, 905
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 4 cut(s) 126, 402, 486, 569
BssMI GATC 4 cut(s) 478, 601, 637, 1003
BssNI GRCGYC 1 cut(s) 1090
BssT1I CCWWGG 2 cut(s) 402, 569
Bst2UI CCWGG 2 cut(s) 487, 1154
Bst4CI ACNGT 2 cut(s) 870, 1192
Bst6I CTCTTC 1 cut(s) 1023
BstACI GRCGYC 1 cut(s) 1090
BstAUI TGTACA 1 cut(s) 1378
BstBAI YACGTR 1 cut(s) 1251
BstC8I GCNNGC 3 cut(s) 32, 277, 1144
BstDEI CTNAG 4 cut(s) 199, 249, 707, 1323
BstF5I GGATG 9 cut(s) 257, 277, 292, 383, 412, 910, 1042, 1105, 1106
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 1207
BstKTI GATC 4 cut(s) 481, 604, 640, 1006
BstMAI GTCTC 3 cut(s) 140, 259, 1068
BstMBI GATC 4 cut(s) 478, 601, 637, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 24, 407, 1163, 1213
BstNI CCWGG 2 cut(s) 487, 1154
BstNSI RCATGY 1 cut(s) 1146
BstSCI CCNGG 3 cut(s) 126, 485, 1152
BstSFI CTRYAG 3 cut(s) 25, 360, 502
BstV1I GCAGC 5 cut(s) 11, 39, 859, 1153, 1244
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 6 cut(s) 183, 297, 567, 647, 1247, 1292
BtgZI GCGATG 1 cut(s) 894
BtsCI GGATG 9 cut(s) 257, 277, 292, 383, 412, 910, 1042, 1105, 1106
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 4 cut(s) 665, 898, 933, 1197
Cac8I GCNNGC 3 cut(s) 32, 277, 1144
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 2 cut(s) 89, 1207
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 182, 296, 566, 1361
CseI GACGC 1 cut(s) 1098
Csp6I GTAC 7 cut(s) 581, 652, 745, 951, 958, 1010, 1379
CviAII CATG 4 cut(s) 326, 796, 1143, 1352
CviQI GTAC 7 cut(s) 581, 652, 745, 951, 958, 1010, 1379
DdeI CTNAG 4 cut(s) 199, 249, 707, 1323
DpnI GATC 4 cut(s) 480, 603, 639, 1005
DpnII GATC 4 cut(s) 478, 601, 637, 1003
EaeI YGGCCR 2 cut(s) 645, 1245
Eam1104I CTCTTC 1 cut(s) 1023
EarI CTCTTC 1 cut(s) 1023
Ecl136II GAGCTC 1 cut(s) 1055
Eco130I CCWWGG 2 cut(s) 402, 569
Eco24I GRGCYC 1 cut(s) 1057
Eco31I GGTCTC 2 cut(s) 140, 259
Eco32I GATATC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 1361
Eco53kI GAGCTC 1 cut(s) 1055
Eco57I CTGAAG 1 cut(s) 1047
Eco88I CYCGRG 2 cut(s) 352, 1110
EcoICRI GAGCTC 1 cut(s) 1055
EcoRI GAATTC 2 cut(s) 167, 971
EcoRII CCWGG 2 cut(s) 485, 1152
EcoRV GATATC 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 402, 569
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 1057
ErhI CCWWGG 2 cut(s) 402, 569
FaeI CATG 4 cut(s) 329, 799, 1146, 1355
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FaqI GGGAC 3 cut(s) 109, 530, 713
FatI CATG 4 cut(s) 325, 795, 1142, 1351
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 25, 28, 848, 1167, 1258
FokI GGATG 9 cut(s) 244, 284, 299, 390, 419, 917, 1049, 1092, 1113
FriOI GRGCYC 1 cut(s) 1057
Fsp4HI GCNGC 5 cut(s) 25, 28, 848, 1167, 1258
FspBI CTAG 4 cut(s) 90, 213, 894, 966
GlaI GCGC 2 cut(s) 88, 1206
GluI GCNGC 5 cut(s) 25, 28, 848, 1167, 1258
GsuI CTGGAG 2 cut(s) 540, 1071
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 6 cut(s) 183, 297, 567, 647, 1247, 1292
HapII CCGG 2 cut(s) 128, 294
HgaI GACGC 1 cut(s) 1098
HhaI GCGC 2 cut(s) 89, 1207
Hin1I GRCGYC 1 cut(s) 1090
Hin1II CATG 4 cut(s) 329, 799, 1146, 1355
Hin6I GCGC 2 cut(s) 87, 1205
HinP1I GCGC 2 cut(s) 87, 1205
HindIII AAGCTT 2 cut(s) 340, 1331
HinfI GANTC 5 cut(s) 195, 382, 1222, 1316, 1355
HpaII CCGG 2 cut(s) 128, 294
HphI GGTGA 2 cut(s) 476, 1223
Hpy166II GTNNAC 2 cut(s) 1379, 1381
Hpy188I TCNGA 6 cut(s) 202, 250, 265, 642, 688, 1227
Hpy188III TCNNGA 4 cut(s) 516, 787, 827, 1285
Hpy8I GTNNAC 2 cut(s) 1379, 1381
HpyAV CCTTC 5 cut(s) 45, 688, 919, 1282, 1367
HpyCH4III ACNGT 2 cut(s) 870, 1192
HpyCH4IV ACGT 2 cut(s) 1079, 1250
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 407, 1163, 1213
HpyF3I CTNAG 4 cut(s) 199, 249, 707, 1323
HpySE526I ACGT 2 cut(s) 1079, 1250
Hsp92I GRCGYC 1 cut(s) 1090
Hsp92II CATG 4 cut(s) 329, 799, 1146, 1355
HspAI GCGC 2 cut(s) 87, 1205
KpnI GGTACC 1 cut(s) 954
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 4 cut(s) 478, 601, 637, 1003
LmnI GCTCC 3 cut(s) 130, 1052, 1202
Lsp1109I GCAGC 5 cut(s) 11, 39, 859, 1153, 1244
LweI GCATC 6 cut(s) 262, 277, 397, 484, 895, 1091
MaeI CTAG 4 cut(s) 90, 213, 894, 966
MaeII ACGT 2 cut(s) 1079, 1250
MaeIII GTNAC 2 cut(s) 531, 559
MalI GATC 4 cut(s) 480, 603, 639, 1005
MbiI CCGCTC 1 cut(s) 832
MboI GATC 4 cut(s) 478, 601, 637, 1003
MboII GAAGA 4 cut(s) 231, 847, 850, 1040
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 1057
MlsI TGGCCA 1 cut(s) 1247
MluCI AATT 8 cut(s) 93, 167, 467, 732, 763, 772, 853, 971
MluNI TGGCCA 1 cut(s) 1247
Mox20I TGGCCA 1 cut(s) 1247
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 975
MscI TGGCCA 1 cut(s) 1247
MseI TTAA 5 cut(s) 447, 1059, 1184, 1329, 1368
MslI CAYNNNNRTG 2 cut(s) 459, 903
Msp20I TGGCCA 1 cut(s) 1247
MspI CCGG 2 cut(s) 128, 294
MspR9I CCNGG 3 cut(s) 128, 487, 1154
Mva1269I GAATGC 1 cut(s) 744
MvaI CCWGG 2 cut(s) 487, 1154
MwoI GCNNNNNNNGC 4 cut(s) 24, 407, 1163, 1213
NciI CCSGG 1 cut(s) 128
NdeII GATC 4 cut(s) 478, 601, 637, 1003
NlaIII CATG 4 cut(s) 329, 799, 1146, 1355
NlaIV GGNNCC 2 cut(s) 132, 952
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 1146
PaeI GCATGC 1 cut(s) 1146
PctI GAATGC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 975
PfeI GAWTC 5 cut(s) 195, 382, 1222, 1316, 1355
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 5 cut(s) 26, 29, 849, 1168, 1259
Ppu21I YACGTR 1 cut(s) 1251
PsiI TTATAA 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 1057
Psp6I CCWGG 2 cut(s) 485, 1152
PspGI CCWGG 2 cut(s) 485, 1152
PspN4I GGNNCC 2 cut(s) 132, 952
PspPI GGNCC 4 cut(s) 182, 296, 566, 1361
PstI CTGCAG 2 cut(s) 29, 364
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 7 cut(s) 582, 653, 746, 952, 959, 1011, 1380
RsaNI GTAC 7 cut(s) 581, 652, 745, 951, 958, 1010, 1379
RseI CAYNNNNRTG 2 cut(s) 459, 903
SacI GAGCTC 1 cut(s) 1057
SaqAI TTAA 5 cut(s) 447, 1059, 1184, 1329, 1368
SatI GCNGC 5 cut(s) 25, 28, 848, 1167, 1258
Sau3AI GATC 4 cut(s) 478, 601, 637, 1003
Sau96I GGNCC 4 cut(s) 182, 296, 566, 1361
ScrFI CCNGG 3 cut(s) 128, 487, 1154
SduI GDGCHC 1 cut(s) 1057
SfaNI GCATC 6 cut(s) 262, 277, 397, 484, 895, 1091
SfcI CTRYAG 3 cut(s) 25, 360, 502
SinI GGWCC 1 cut(s) 1361
SmiMI CAYNNNNRTG 2 cut(s) 459, 903
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SphI GCATGC 1 cut(s) 1146
Sse9I AATT 8 cut(s) 93, 167, 467, 732, 763, 772, 853, 971
SsiI CCGC 2 cut(s) 832, 925
SspI AATATT 1 cut(s) 820
SspMI CTAG 4 cut(s) 90, 213, 894, 966
SstI GAGCTC 1 cut(s) 1057
StyD4I CCNGG 3 cut(s) 126, 485, 1152
StyI CCWWGG 2 cut(s) 402, 569
TaaI ACNGT 2 cut(s) 870, 1192
TaiI ACGT 2 cut(s) 1082, 1253
TaqI TCGA 2 cut(s) 52, 1173
TasI AATT 8 cut(s) 93, 167, 467, 732, 763, 772, 853, 971
TatI WGTACW 1 cut(s) 1378
TfiI GAWTC 5 cut(s) 195, 382, 1222, 1316, 1355
Tru1I TTAA 5 cut(s) 447, 1059, 1184, 1329, 1368
Tru9I TTAA 5 cut(s) 447, 1059, 1184, 1329, 1368
TscAI CASTG 4 cut(s) 672, 905, 940, 1197
TseI GCWGC 5 cut(s) 24, 27, 847, 1166, 1257
TspDTI ATGAA 7 cut(s) 59, 429, 651, 812, 878, 897, 1355
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 4 cut(s) 672, 905, 940, 1197
Van91I CCANNNNNTGG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 1361
XapI RAATTY 5 cut(s) 167, 467, 772, 853, 971
XceI RCATGY 1 cut(s) 1146
XmnI GAANNNNTTC 1 cut(s) 975
XspI CTAG 4 cut(s) 90, 213, 894, 966
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.