AT2G23940

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004636
Physical Location & Seq
Forward (+)
10183867 .. 10185331
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23940.2

Sequence Viewer

Length: 522 bp
ATGGCGAATCAAGGAGCGAAGAAACGAAAGGAAGAGAACGCCAAACACATGGCTAAGCTCCGTCGTATCATCATCGCTTCCAATGCTGTGTATTTCGTTGTGAGGATGTTGATTTTCTACTCAAGCTTTACTTGGAAACATTGGATCGGTTTAGTGATAACTTCGCTGGCTTACGCGTTTCCTTATAAGCAGCTTGATCAAATGGCTAAACCTAGTGTTACTGATGATGGTGAGCTTATTGATGGTGGATTTGACATGACCACTGGTGGAATCTGCGGATATTTGCACGATGTCATCTATATCACTTGCTTTGTTCAGCTAGCTTCCATCATCACTGGGAAGTTTTGGTACACGTATCTTGTGATTCCTGCGTTTGGAGTGTATAAAGCTTCTGGTCTTATTCGAGGATTCATGTCACAAGGTTCAGAGGGAGGTGTGGAAGATGAAAAGTCTCGTAAAAAGAGAGAGAAGATGGAGAGGAAAGCTTCGAGAGGGCAAGTCGTCAAGACGAGAACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

173

Amino Acids

19.63

Weight (kDa)

9.77

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 162 7.1e-58 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AccII CGCG 1 cut(s) 176
AciI CCGC 1 cut(s) 276
AclWI GGATC 1 cut(s) 152
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 174, 351
AluBI AGCT 8 cut(s) 58, 126, 193, 235, 319, 323, 389, 485
AluI AGCT 8 cut(s) 58, 126, 193, 235, 319, 323, 389, 485
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 242
AsuNHI GCTAGC 1 cut(s) 319
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BbvI GCAGC 1 cut(s) 202
BccI CCATC 4 cut(s) 221, 236, 335, 466
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 2 cut(s) 213, 320
BisI GCNGC 1 cut(s) 191
BlpI GCTNAGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 345
BmtI GCTAGC 1 cut(s) 323
BmuI ACTGGG 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 268, 340
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 268, 340
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 144, 196
Bsp1720I GCTNAGC 1 cut(s) 54
BspACI CCGC 1 cut(s) 276
BspFNI CGCG 1 cut(s) 176
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 268, 340
BssMI GATC 2 cut(s) 144, 196
Bst6I CTCTTC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 168, 321
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 2 cut(s) 147, 199
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 2 cut(s) 144, 196
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 261, 333
Cac8I GCNNGC 2 cut(s) 168, 321
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 49, 256, 412
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 146, 198
DpnII GATC 2 cut(s) 144, 196
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
FaeI CATG 3 cut(s) 52, 259, 415
FaiI YATR 6 cut(s) 50, 186, 257, 300, 384, 413
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 3 cut(s) 48, 255, 411
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 2 cut(s) 213, 320
GluI GCNGC 1 cut(s) 191
Hin1II CATG 3 cut(s) 52, 259, 415
HindIII AAGCTT 3 cut(s) 124, 387, 483
HinfI GANTC 4 cut(s) 7, 270, 364, 408
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 2 cut(s) 489, 505
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 52, 259, 415
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 144, 196
LmnI GCTCC 2 cut(s) 14, 63
LpnPI CCDG 5 cut(s) 152, 249, 321, 378, 381
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 2 cut(s) 213, 320
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 217, 414
MalI GATC 2 cut(s) 146, 198
MboI GATC 2 cut(s) 144, 196
MboII GAAGA 4 cut(s) 31, 44, 452, 481
MluI ACGCGT 1 cut(s) 174
MnlI CCTC 6 cut(s) 96, 398, 421, 425, 471, 485
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 144, 196
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 3 cut(s) 52, 259, 415
NmuCI GTSAC 1 cut(s) 414
PfeI GAWTC 4 cut(s) 7, 270, 364, 408
PkrI GCNGC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 354
PsiI TTATAA 1 cut(s) 186
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 144, 196
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SsiI CCGC 1 cut(s) 276
SspMI CTAG 2 cut(s) 213, 320
TaiI ACGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 403, 488
TfiI GAWTC 4 cut(s) 7, 270, 364, 408
TscAI CASTG 2 cut(s) 268, 340
TseFI GTSAC 1 cut(s) 414
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 2 cut(s) 400, 459
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 268, 340
XspI CTAG 2 cut(s) 213, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.