Rh4BG124100

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004636
Physical Location & Seq
Forward (+)
20746107 .. 20751965
5859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG124100.1

Sequence Viewer

Length: 378 bp
ATGGCAAATCAAGGTGCGAAGAAGCGCAAGGAAGAGAATGCCCGGCACATGGCGAATATCCGTCGCTTGATTGTGGCCTGCAATGTGATTTATGTGGTGGTAAGGATGCTGTTCTTCCATTCTACTTTTACATGGAAAAACTGGGTTGCTTTGCTACTGACATCTGTAGCATATTACATTCCCTATCAACAACTTGCCCAAATGGCAAATCCTACTTATGCTGATAATGGGGAACTTCTGGATGGTGGATTTGATATGACTACTGGTGGAGTGTGTGGCTATTTACATGACGTAATCTACATTACAAGCTTCGTGCAAGTCATGTCCATAATCTCTGGAAAATTTTGGTACACATATCTGGTGGTAAGATCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

125

Amino Acids

14.38

Weight (kDa)

9.14

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 122 2.4e-45 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
AoxI GGCC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 43
BccI CCATC 1 cut(s) 236
BcnI CCSGG 1 cut(s) 43
BfmI CTRYAG 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 146, 268
Bse3DI GCAATG 1 cut(s) 88
BseGI GGATG 2 cut(s) 111, 247
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 2 cut(s) 146, 268
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 49
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 368
BspANI GGCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 2 cut(s) 146, 268
BssMI GATC 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 2 cut(s) 111, 247
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 371
BstMBI GATC 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 111, 247
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 349
CviAII CATG 4 cut(s) 49, 132, 287, 322
CviJI RGCY 3 cut(s) 77, 279, 309
CviKI_1 RGCY 3 cut(s) 77, 279, 309
CviQI GTAC 1 cut(s) 349
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
FaeI CATG 4 cut(s) 52, 135, 290, 325
FatI CATG 4 cut(s) 48, 131, 286, 321
FokI GGATG 2 cut(s) 118, 254
GlaI GCGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 27
Hin1II CATG 4 cut(s) 52, 135, 290, 325
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 307
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 351
Hpy188III TCNNGA 2 cut(s) 239, 336
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 81, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 52, 135, 290, 325
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 368
LpnPI CCDG 7 cut(s) 56, 91, 127, 224, 249, 321, 344
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 291
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 3 cut(s) 31, 44, 106
MflI RGATCY 1 cut(s) 368
MluCI AATT 1 cut(s) 341
MseI TTAA 1 cut(s) 376
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 43
NdeII GATC 1 cut(s) 368
NlaIII CATG 4 cut(s) 52, 135, 290, 325
PctI GAATGC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 376
Sau3AI GATC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 43
SetI ASST 3 cut(s) 16, 294, 311
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 294
TasI AATT 1 cut(s) 341
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 50
XapI RAATTY 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.