Rh5CG349300

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004636
Physical Location & Seq
Forward (+)
40270158 .. 40271869
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG349300.1

Sequence Viewer

Length: 522 bp
ATGGCAAATCAAGGTGCAAAAAAGCGTAAGGAAGAGAATGCTCGGCACATGGCAAATATCCGTCGCCTGATTGTGGCCTGCAATGTGATTTATGTGGTAGTAAGGATGCTCATCTTCCATTCTACTTTTACCTGGAAAAACTGGGTTGCTTTGCTGCTGACATCTGTAATTTATTATATTCCCTATCAACAACTCGCCCAAATGGCAAATCCTTCTTATGCTAATGATGGCGAACTTCTAGACGGCGGATTTGATATGACCACTGGTGGAGTGTGTGGCTATTTACATGACGTAATCTACATTACAAGCTTCGTGCAAGTCATGTCCATAATCTCTGGAAAATTTTGGTATACGTATCTGCTGATACCAGGTTTTGGAGCATACAAATCATTTGGTTTCTTTAGAGGATTTATGTCCCAAAGTTCAGAGGGAGGCTTGGAGGATGAAAAGACACGAAAGAAGAGGGGAAAGATGGAGAAGAAGGCTTCAAGAGCCCAGTTTGTCAAGACAAGAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

173

Amino Acids

19.84

Weight (kDa)

9.87

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 162 4.3e-56 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 1 cut(s) 350
AciI CCGC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 73, 374
AgsI TTSAA 1 cut(s) 489
AjnI CCWGG 2 cut(s) 131, 367
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
BanII GRGCYC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 221, 466
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 133, 369
BfaI CTAG 1 cut(s) 239
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 133, 369
BmrFI CCNGG 2 cut(s) 133, 369
BmrI ACTGGG 2 cut(s) 151, 490
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 2 cut(s) 151, 490
BsaAI YACGTR 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 374
Bse1I ACTGG 3 cut(s) 146, 268, 496
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 2 cut(s) 133, 369
BseGI GGATG 2 cut(s) 111, 448
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 73, 374
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 146, 268, 496
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 73, 374
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 496
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 3 cut(s) 146, 268, 496
BssNAI GTATAC 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 133, 369
Bst6I CTCTTC 2 cut(s) 27, 455
BstBAI YACGTR 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 2 cut(s) 111, 448
BstMWI GCNNNNNNNGC 2 cut(s) 203, 491
BstNI CCWGG 2 cut(s) 133, 369
BstSCI CCNGG 2 cut(s) 131, 367
BstSNI TACGTA 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 141
BstZ17I GTATAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 111, 448
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 79
CsiI ACCWGGT 1 cut(s) 367
CviAII CATG 3 cut(s) 49, 287, 322
CviJI RGCY 6 cut(s) 77, 279, 309, 435, 485, 494
CviKI_1 RGCY 6 cut(s) 77, 279, 309, 435, 485, 494
Eam1104I CTCTTC 2 cut(s) 27, 455
EarI CTCTTC 2 cut(s) 27, 455
EciI GGCGGA 1 cut(s) 261
Eco105I TACGTA 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 131, 367
EcoT38I GRGCYC 1 cut(s) 496
FaeI CATG 3 cut(s) 52, 290, 325
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 48, 286, 321
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 2 cut(s) 118, 455
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 3 cut(s) 52, 290, 325
HindIII AAGCTT 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 4 cut(s) 239, 336, 489, 505
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 222, 475
HpyCH4IV ACGT 2 cut(s) 291, 353
HpyCH4V TGCA 3 cut(s) 17, 81, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 491
HpySE526I ACGT 2 cut(s) 291, 353
Hsp92II CATG 3 cut(s) 52, 290, 325
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 96
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 291, 353
MboII GAAGA 4 cut(s) 44, 106, 472, 490
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 2 cut(s) 168, 341
MnlI CCTC 5 cut(s) 398, 421, 425, 433, 456
MspR9I CCNGG 2 cut(s) 133, 369
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 2 cut(s) 133, 369
MwoI GCNNNNNNNGC 2 cut(s) 203, 491
NlaIII CATG 3 cut(s) 52, 290, 325
NmeAIII GCCGAG 1 cut(s) 22
PctI GAATGC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 131, 367
PspGI CCWGG 2 cut(s) 131, 367
SatI GCNGC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 133, 369
SduI GDGCHC 1 cut(s) 496
SetI ASST 6 cut(s) 16, 134, 294, 311, 356, 373
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 1 cut(s) 96
SnaBI TACGTA 1 cut(s) 354
Sse9I AATT 2 cut(s) 168, 341
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 131, 367
TaiI ACGT 2 cut(s) 294, 356
TasI AATT 2 cut(s) 168, 341
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.