AT4G30500

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004636
Physical Location & Seq
Forward (+)
14903351 .. 14905008
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30500.1

Sequence Viewer

Length: 522 bp
ATGGCGAATCAAGGAGCAAAGAAGAGGAAAGATGAGAACGCTCGACACATGGCTAAGCTCCGTCTCATTATGATCCTTTGCAACATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCATTCAAGTCATACCTGGAAAAATTGGATTGGTCTTGTGTTAACATCGTTAGGTTACGGGATTCCATATAAGCTTCTTCATCAAATGGCAAAGCCTAGTGTTAGTGATGCTGGTGAACTTCTTGATGGTGGATTTGACATGAGCACTCCTGGAATGTGTGGATATTTGCATGATGTACTCTACATCACCTGCTTTGTGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTGATCCCTGCATTTGGAGCATACAAAGCTTCTGGTCTTATTAAGGGACTATTGTCACATGGTTCAGAGGGAGGTGTTGAGGATGAGAAGACTCGCAAAAAGAGGGAGAAGATGGAGAGAAAAGCTTCTAGAGGACAAGTCGTTAAGACAAGATCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

173

Amino Acids

19.3

Weight (kDa)

9.8

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 162 1.6e-54 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 2 cut(s) 307, 314
AccII CGCG 1 cut(s) 353
AclWI GGATC 3 cut(s) 67, 331, 358
AfaI GTAC 2 cut(s) 294, 350
AfiI CCNNNNNNNGG 2 cut(s) 103, 374
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 1 cut(s) 123
AjnI CCWGG 2 cut(s) 131, 265
AluBI AGCT 4 cut(s) 58, 190, 389, 485
AluI AGCT 4 cut(s) 58, 190, 389, 485
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 3 cut(s) 67, 331, 358
Asp700I GAANNNNTTC 1 cut(s) 484
AsuHPI GGTGA 2 cut(s) 242, 295
BbsI GAAGAC 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 263
BccI CCATC 2 cut(s) 236, 466
BciT130I CCWGG 2 cut(s) 133, 267
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 3 cut(s) 98, 213, 489
BfuAI ACCTGC 2 cut(s) 307, 314
BglII AGATCT 1 cut(s) 512
BlpI GCTNAGC 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 133, 267
BmrFI CCNGG 2 cut(s) 133, 267
BmsI GCATC 1 cut(s) 214
BoxI GACNNNNGTC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 374
BseBI CCWGG 2 cut(s) 133, 267
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 2 cut(s) 103, 374
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 263
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 2 cut(s) 103, 374
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 4 cut(s) 72, 323, 363, 512
Bsp1720I GCTNAGC 1 cut(s) 54
BspFNI CGCG 1 cut(s) 353
BspMI ACCTGC 2 cut(s) 307, 314
BspPI GGATC 3 cut(s) 67, 331, 358
BssMI GATC 4 cut(s) 72, 323, 363, 512
Bst2UI CCWGG 2 cut(s) 133, 267
Bst6I CTCTTC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 1 cut(s) 353
BstKTI GATC 4 cut(s) 75, 326, 366, 515
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 4 cut(s) 72, 323, 363, 512
BstMWI GCNNNNNNNGC 2 cut(s) 377, 386
BstNI CCWGG 2 cut(s) 133, 267
BstPAI GACNNNNGTC 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 131, 265
BstUI CGCG 1 cut(s) 353
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 2 cut(s) 323, 512
BstYI RGATCY 2 cut(s) 323, 512
BtsCI GGATG 1 cut(s) 448
BveI ACCTGC 2 cut(s) 307, 314
Csp6I GTAC 2 cut(s) 293, 349
CviAII CATG 4 cut(s) 49, 256, 287, 419
CviJI RGCY 6 cut(s) 53, 58, 190, 211, 389, 485
CviKI_1 RGCY 6 cut(s) 53, 58, 190, 211, 389, 485
CviQI GTAC 2 cut(s) 293, 349
DdeI CTNAG 1 cut(s) 54
DpnI GATC 4 cut(s) 74, 325, 365, 514
DpnII GATC 4 cut(s) 72, 323, 363, 512
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 131, 265
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 4 cut(s) 52, 259, 290, 422
FaqI GGGAC 1 cut(s) 420
FatI CATG 4 cut(s) 48, 255, 286, 418
FokI GGATG 1 cut(s) 455
FspBI CTAG 3 cut(s) 98, 213, 489
Hin1II CATG 4 cut(s) 52, 259, 290, 422
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HindIII AAGCTT 3 cut(s) 188, 387, 483
HinfI GANTC 3 cut(s) 7, 178, 451
HpaI GTTAAC 1 cut(s) 159
HphI GGTGA 2 cut(s) 242, 295
Hpy166II GTNNAC 2 cut(s) 159, 233
Hpy188I TCNGA 2 cut(s) 323, 427
Hpy188III TCNNGA 4 cut(s) 239, 336, 489, 516
Hpy8I GTNNAC 2 cut(s) 159, 233
HpyCH4V TGCA 4 cut(s) 81, 286, 316, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 386
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 4 cut(s) 52, 259, 290, 422
KspAI GTTAAC 1 cut(s) 159
Kzo9I GATC 4 cut(s) 72, 323, 363, 512
LmnI GCTCC 3 cut(s) 14, 63, 377
LweI GCATC 1 cut(s) 214
MaeI CTAG 3 cut(s) 98, 213, 489
MaeIII GTNAC 2 cut(s) 170, 414
MalI GATC 4 cut(s) 74, 325, 365, 514
MboI GATC 4 cut(s) 72, 323, 363, 512
MboII GAAGA 4 cut(s) 34, 185, 460, 481
MflI RGATCY 2 cut(s) 323, 512
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 2 cut(s) 111, 139
MluI ACGCGT 1 cut(s) 351
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 7 cut(s) 18, 96, 421, 425, 433, 456, 485
MroXI GAANNNNTTC 1 cut(s) 484
MseI TTAA 3 cut(s) 158, 402, 504
MspR9I CCNGG 2 cut(s) 133, 267
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 2 cut(s) 133, 267
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 377, 386
NdeII GATC 4 cut(s) 72, 323, 363, 512
NlaIII CATG 4 cut(s) 52, 259, 290, 422
NmuCI GTSAC 1 cut(s) 414
PaqCI CACCTGC 1 cut(s) 314
PctI GAATGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 7, 178
PfoI TCCNGGA 1 cut(s) 265
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PshAI GACNNNNGTC 1 cut(s) 412
PsiI TTATAA 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 131, 265
PspGI CCWGG 2 cut(s) 131, 265
PsuI RGATCY 2 cut(s) 323, 512
RsaI GTAC 2 cut(s) 294, 350
RsaNI GTAC 2 cut(s) 293, 349
SaqAI TTAA 3 cut(s) 158, 402, 504
Sau3AI GATC 4 cut(s) 72, 323, 363, 512
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 2 cut(s) 133, 267
SduI GDGCHC 1 cut(s) 263
SetI ASST 9 cut(s) 60, 134, 172, 192, 308, 321, 391, 436, 487
SfaNI GCATC 1 cut(s) 214
Sse9I AATT 2 cut(s) 111, 139
SspMI CTAG 3 cut(s) 98, 213, 489
StyD4I CCNGG 2 cut(s) 131, 265
TaqI TCGA 2 cut(s) 43, 517
TasI AATT 2 cut(s) 111, 139
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 2 cut(s) 7, 178
Tru1I TTAA 3 cut(s) 158, 402, 504
Tru9I TTAA 3 cut(s) 158, 402, 504
TseFI GTSAC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 50
XbaI TCTAGA 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 484
XspI CTAG 3 cut(s) 98, 213, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.