MD00G1059200.v1.1

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0004636
Physical Location & Seq
Forward (+)
11006528 .. 11009608
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1059200.v1.1.491

Sequence Viewer

Length: 522 bp
ATGGCAAATCAAGGTGCAAAGAAGCGCAAGGAAGAGAATGCCCGCCACATGGCCAATCTCCTTCGCCTCATCATGGCCTGTAATGTTATTTATGTGCTAGTAAGGATGCTCATCTTCCATTCTAGTTTCACCTGGAAAAATTGGGTTGCTTTGCTTCTCACTTCTCTCGCTTATTACTTTCCCTATCAACAACTGGCCCAAATGGCAAATCCTTCTATTGGCGATGATGGGGAACTTCTAGATGGTGGCTTTGATATGACTACTGGTGGAGTATGCGGCTATTTGCATGATGTCATCTACATCACATGCTTTGTGCAAGTCATGTCCATAATCTCTGGAAAATTTTGGTACACATATCTGCTGATACCAGGTTTTGGAGCATACAAATCATTCGGTTTCATTAGAGGATTTATGTCTCAAGGTTCAGAGGGGGGTGTTGAGGATGAAAAGACTCGGAAGAAGAGGGAAAAGTTGGAGAAGAAGGCTTCAAGACCCCAGTTTGTCAAGACAAGAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

174

Amino Acids

19.78

Weight (kDa)

9.54

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 162 2.4e-56 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AciI CCGC 2 cut(s) 43, 276
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 49, 73, 218, 374
AgsI TTSAA 1 cut(s) 489
AjnI CCWGG 2 cut(s) 131, 367
Alw26I GTCTC 1 cut(s) 420
AoxI GGCC 3 cut(s) 51, 75, 195
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 121
BalI TGGCCA 1 cut(s) 53
BccI CCATC 2 cut(s) 221, 236
BciT130I CCWGG 2 cut(s) 133, 369
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 3 cut(s) 98, 123, 239
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
Bme1390I CCNGG 2 cut(s) 133, 369
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 133, 369
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 490
BpuEI CTTGAG 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 73, 218, 374
Bse1I ACTGG 3 cut(s) 198, 268, 496
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 2 cut(s) 133, 369
BseGI GGATG 2 cut(s) 111, 448
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 4 cut(s) 49, 73, 218, 374
BseNI ACTGG 3 cut(s) 198, 268, 496
BshFI GGCC 3 cut(s) 53, 77, 197
BslI CCNNNNNNNGG 4 cut(s) 49, 73, 218, 374
BsmAI GTCTC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 3 cut(s) 53, 77, 197
BspACI CCGC 2 cut(s) 43, 276
BspANI GGCC 3 cut(s) 53, 77, 197
BsrI ACTGG 3 cut(s) 198, 268, 496
Bst2UI CCWGG 2 cut(s) 133, 369
Bst6I CTCTTC 2 cut(s) 27, 455
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 2 cut(s) 111, 448
BstHHI GCGC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 420
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 133, 369
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 131, 367
BsuRI GGCC 3 cut(s) 53, 77, 197
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 111, 448
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 1 cut(s) 349
CviAII CATG 5 cut(s) 49, 73, 287, 306, 322
CviJI RGCY 6 cut(s) 53, 77, 197, 249, 279, 485
CviKI_1 RGCY 6 cut(s) 53, 77, 197, 249, 279, 485
CviQI GTAC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 27, 455
EarI CTCTTC 2 cut(s) 27, 455
EcoRII CCWGG 2 cut(s) 131, 367
FaeI CATG 5 cut(s) 52, 76, 290, 309, 325
FatI CATG 5 cut(s) 48, 72, 286, 305, 321
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 2 cut(s) 118, 455
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 3 cut(s) 98, 123, 239
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 277
HaeIII GGCC 3 cut(s) 53, 77, 197
HhaI GCGC 1 cut(s) 27
Hin1II CATG 5 cut(s) 52, 76, 290, 309, 325
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 1 cut(s) 451
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 427, 456
Hpy188III TCNNGA 4 cut(s) 239, 336, 489, 505
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 3 cut(s) 71, 222, 475
HpyCH4V TGCA 3 cut(s) 17, 286, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 5 cut(s) 52, 76, 290, 309, 325
HspAI GCGC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 377
LpnPI CCDG 9 cut(s) 91, 118, 145, 179, 249, 321, 354, 381, 509
LweI GCATC 1 cut(s) 96
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 3 cut(s) 98, 123, 239
MboII GAAGA 5 cut(s) 44, 106, 469, 472, 490
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 2 cut(s) 139, 341
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 5 cut(s) 77, 398, 421, 433, 456
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 133, 369
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 2 cut(s) 133, 369
MwoI GCNNNNNNNGC 1 cut(s) 203
NlaIII CATG 5 cut(s) 52, 76, 290, 309, 325
NspI RCATGY 1 cut(s) 309
PctI GAATGC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 131, 367
PspGI CCWGG 2 cut(s) 131, 367
PspPI GGNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 2 cut(s) 133, 369
SetI ASST 4 cut(s) 16, 134, 373, 424
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
Sse9I AATT 2 cut(s) 139, 341
SsiI CCGC 2 cut(s) 43, 276
SspMI CTAG 3 cut(s) 98, 123, 239
StyD4I CCNGG 2 cut(s) 131, 367
TasI AATT 2 cut(s) 139, 341
TauI GCSGC 1 cut(s) 279
TspDTI ATGAA 2 cut(s) 388, 459
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 238
XceI RCATGY 1 cut(s) 309
XspI CTAG 3 cut(s) 98, 123, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.