Rh4AG129800

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004636
Physical Location & Seq
Forward (+)
28139779 .. 28142132
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG129800.1

Sequence Viewer

Length: 522 bp
ATGGCAAATCAAGGTGCGAAGAAGCGCAAGGAAGAGAATGCCCGGCACATGGCGAATATCCTTCGCTTGATTGTGGCCTGCAATGTGATTTATGTGGTGGTAAGGATGCTGATTTTCCATTCCACTTTTACATGGAAAAACTGGGTTGCTTTGCTACTGACATCTGTGGCATATTACATTCCCTATCAACAACTTGCCCAAATGGCAAAACCTACTTATGCTGATAATGGGGAACTTCTGGATGGTGGATTTGATATGACTACTGGTGGAGTGTGTGGCTATTTACATGACGTAATCTACATTACAAGCTTCGTGCAAGTCATGTCCATAATCTCTGGAAAATTTTGGTACACATATCTGGTGATACCAGCTTTTGGAGGATACAAATCATTTGGTTTCATTAAGGGATTTATGTCACAAGGTTCAGAGGGAGGCATAGAGGATGAAAAGACTCGGAAGAAGAGGGAAAAGATGGAGAAGAAGGCTTCAAGAGGCCAGTTTGTCAAGTCAAGAAATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

173

Amino Acids

19.71

Weight (kDa)

9.7

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 162 1.6e-57 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 49, 374
AgsI TTSAA 1 cut(s) 489
AluBI AGCT 2 cut(s) 309, 371
AluI AGCT 2 cut(s) 309, 371
AoxI GGCC 2 cut(s) 75, 493
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 373
BccI CCATC 2 cut(s) 236, 466
BciVI GTATCC 1 cut(s) 374
BcnI CCSGG 1 cut(s) 43
BfuI GTATCC 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 374
Bse1I ACTGG 3 cut(s) 146, 268, 496
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 385
BseGI GGATG 3 cut(s) 111, 247, 448
BseJI GATNNNNATC 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 49, 374
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 146, 268, 496
BshFI GGCC 2 cut(s) 77, 495
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 49, 374
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 2 cut(s) 77, 495
BspANI GGCC 2 cut(s) 77, 495
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 3 cut(s) 146, 268, 496
Bst6I CTCTTC 2 cut(s) 27, 455
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 3 cut(s) 111, 247, 448
BstHHI GCGC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 2 cut(s) 77, 495
BtsCI GGATG 3 cut(s) 111, 247, 448
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 349
CviAII CATG 4 cut(s) 49, 132, 287, 322
CviJI RGCY 6 cut(s) 77, 279, 309, 371, 485, 495
CviKI_1 RGCY 6 cut(s) 77, 279, 309, 371, 485, 495
CviQI GTAC 1 cut(s) 349
Eam1104I CTCTTC 2 cut(s) 27, 455
EarI CTCTTC 2 cut(s) 27, 455
FaeI CATG 4 cut(s) 52, 135, 290, 325
FatI CATG 4 cut(s) 48, 131, 286, 321
FokI GGATG 3 cut(s) 118, 254, 455
GlaI GCGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 77, 495
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 27
Hin1II CATG 4 cut(s) 52, 135, 290, 325
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 1 cut(s) 451
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 427, 456
Hpy188III TCNNGA 4 cut(s) 239, 336, 489, 510
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 71, 475
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 81, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 52, 135, 290, 325
HspAI GCGC 1 cut(s) 25
LpnPI CCDG 9 cut(s) 56, 91, 127, 224, 249, 321, 344, 381, 509
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 414
MboII GAAGA 5 cut(s) 31, 44, 469, 472, 490
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 6 cut(s) 371, 421, 425, 433, 456, 485
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 43
NlaIII CATG 4 cut(s) 52, 135, 290, 325
NmuCI GTSAC 1 cut(s) 414
PctI GAATGC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 374
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 402
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 43
SetI ASST 6 cut(s) 16, 214, 294, 311, 373, 424
SfaNI GCATC 1 cut(s) 96
Sse9I AATT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 294
TasI AATT 1 cut(s) 341
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseFI GTSAC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 2 cut(s) 388, 459
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.