Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003154.1

Orthogroup ID

OG0004636

Physical Location & Seq

Genomic Coordinates Reverse (-)

142500 .. 148248

Gene Structure 5749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003154.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggagtccaggtcattgggccacgaaattctcatggctactatgcttaatggggctgcaaatatagatggggcattgcttctgacgtctgagcatcttgctgctctgaaaattgtgccacttgttctgggatcaatatatgcaacatatgtattagtgggggttttgttgcggacgctgatacattctgctagggtaagtcctatagagaggcatagagagagagagatggcaaatcaaggtgcaaaaaagcgcaaggaagagaatgctcggcacatggcaaatatccgtctcctgattgtggcctgcaatgtgatgtatgtggtagtaaggatgctcatcttccattctacttttacctggaaaaactgggttgctttgctgctgacatctgtaatttattatattccctatcaacaactcgcccaaatggcaaatccttcttatgctgatgatggcgaacttctagatggcggatttgatatgaccactggtggagtgtgtggctatttacatgacgtaatctacattacaagcttcgtgcaagtcatgtccataatctctggaaaattttggtatacgtatctgctgataccaggttttggagcatacaaatcatttggtttcttcagaggatttatgtcccaaagttcagagggaggcttggaggatgaaaagacacgaaagaagagggaaaagatggaaaagaaggcttcaagagcccagtttgtcaagacaagaaaaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF788

Protein Analysis

249

Amino Acids

28.17

Weight (kDa)

9.57

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23940 AT2G23940 AT2G23940 AT4G30500
fragaria_vesca	FvH4_3g25860
malus_domestica	MD00G1059200.v1.1 MD00G1091200.v1.1
prunus_persica	Prupe.1G100400_v2.0.a1 Prupe.1G100400_v2.0.a1 Prupe.1G100400_v2.0.a1 Prupe.1G100400_v2.0.a1
pyrus_communis	pycom13g28640
rosa_chinensis	RchiOBHm_Chr4g0405231 RchiOBHm_Chr5g0047191
rosa_laevigata	RLG00000008863 RLG00000034474
rosa_multiflora	Rmu_sc0002310.1_g000008 Rmu_sc0003154.1_g000026
rosa_roxburghii	Rroxscaffold_1G00034200 Rroxscaffold_5G00349550
rosa_rugosa	Rorug04G0055300 Rorug05G0234700
rosa_samantha	Rh4AG129800 Rh4BG124100 Rh4CG137100 Rh4DG123400 Rh5AG313500 Rh5BG322200 Rh5CG349300
rosa_wichuraiana	Rw4G010500 Rw5G029260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	578
AciI	CCGC	2 cut(s)	172, 474
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	27, 569
AcuI	CTGAAG	1 cut(s)	613
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	301, 602
AgsI	TTSAA	1 cut(s)	717
AjnI	CCWGG	3 cut(s)	8, 359, 595
AluBI	AGCT	1 cut(s)	537
AluI	AGCT	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	2 cut(s)	19, 303
ApeKI	GCWGC	3 cut(s)	56, 101, 382
ApoI	RAATTY	2 cut(s)	27, 569
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	724
BbvI	GCAGC	3 cut(s)	43, 88, 369
BccI	CCATC	5 cut(s)	62, 223, 449, 464, 694
BciT130I	CCWGG	3 cut(s)	10, 361, 597
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	192, 467
BfmI	CTRYAG	1 cut(s)	204
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	3 cut(s)	57, 102, 383
BlsI	GCNGC	3 cut(s)	58, 103, 384
Bme1390I	CCNGG	3 cut(s)	10, 361, 597
BmgT120I	GGNCC	1 cut(s)	19
BmrFI	CCNGG	3 cut(s)	10, 361, 597
BmrI	ACTGGG	2 cut(s)	379, 718
BmsI	GCATC	2 cut(s)	103, 324
BmuI	ACTGGG	2 cut(s)	379, 718
BsaAI	YACGTR	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	86
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 602
Bse1I	ACTGG	3 cut(s)	374, 496, 724
Bse3DI	GCAATG	2 cut(s)	74, 316
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	3 cut(s)	10, 361, 597
BseGI	GGATG	2 cut(s)	339, 676
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	301, 602
BseMI	GCAATG	2 cut(s)	74, 316
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	3 cut(s)	374, 496, 724
BseXI	GCAGC	3 cut(s)	43, 88, 369
BshFI	GGCC	2 cut(s)	21, 305
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	2 cut(s)	301, 602
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	21, 305
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	172, 474
BspANI	GGCC	2 cut(s)	21, 305
BspCNI	CTCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	139
BsrDI	GCAATG	2 cut(s)	74, 316
BsrI	ACTGG	3 cut(s)	374, 496, 724
BssMI	GATC	1 cut(s)	131
BssNAI	GTATAC	1 cut(s)	579
BssNI	GRCGYC	1 cut(s)	86
Bst1107I	GTATAC	1 cut(s)	579
Bst2UI	CCWGG	3 cut(s)	10, 361, 597
Bst6I	CTCTTC	2 cut(s)	255, 683
BstACI	GRCGYC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	339, 676
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 719
BstNI	CCWGG	3 cut(s)	10, 361, 597
BstSCI	CCNGG	3 cut(s)	8, 359, 595
BstSFI	CTRYAG	1 cut(s)	204
BstSNI	TACGTA	1 cut(s)	582
BstV1I	GCAGC	3 cut(s)	43, 88, 369
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	21, 305
BtsCI	GGATG	2 cut(s)	339, 676
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	595
CviAII	CATG	4 cut(s)	34, 277, 515, 550
CviJI	RGCY	9 cut(s)	21, 38, 56, 305, 507, 537, 663, 713, 722
CviKI_1	RGCY	9 cut(s)	21, 38, 56, 305, 507, 537, 663, 713, 722
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	2 cut(s)	255, 683
EarI	CTCTTC	2 cut(s)	255, 683
EciI	GGCGGA	1 cut(s)	489
Eco105I	TACGTA	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	613
EcoRII	CCWGG	3 cut(s)	8, 359, 595
EcoT38I	GRGCYC	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	4 cut(s)	37, 280, 518, 553
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	4 cut(s)	33, 276, 514, 549
FauNDI	CATATG	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	3 cut(s)	57, 102, 383
FokI	GGATG	2 cut(s)	346, 683
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	3 cut(s)	57, 102, 383
FspBI	CTAG	2 cut(s)	192, 467
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	3 cut(s)	57, 102, 383
HaeIII	GGCC	2 cut(s)	21, 305
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	37, 280, 518, 553
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	5 cut(s)	84, 91, 108, 632, 655
Hpy188III	TCNNGA	5 cut(s)	295, 467, 564, 717, 733
Hpy8I	GTNNAC	1 cut(s)	579
HpyAV	CCTTC	2 cut(s)	450, 703
HpyCH4IV	ACGT	3 cut(s)	86, 519, 581
HpyCH4V	TGCA	5 cut(s)	59, 143, 245, 309, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 719
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	3 cut(s)	86, 519, 581
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	37, 280, 518, 553
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	3 cut(s)	43, 88, 369
LweI	GCATC	2 cut(s)	103, 324
MabI	ACCWGGT	1 cut(s)	595
MaeI	CTAG	2 cut(s)	192, 467
MaeII	ACGT	3 cut(s)	86, 519, 581
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	4 cut(s)	272, 334, 619, 700
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	4 cut(s)	27, 111, 396, 569
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	6 cut(s)	204, 626, 649, 653, 661, 684
MseI	TTAA	1 cut(s)	48
MspR9I	CCNGG	3 cut(s)	10, 361, 597
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	3 cut(s)	10, 361, 597
MwoI	GCNNNNNNNGC	2 cut(s)	431, 719
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	4 cut(s)	37, 280, 518, 553
NmeAIII	GCCGAG	1 cut(s)	250
PctI	GAATGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	3 cut(s)	58, 103, 384
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	582
Psp6I	CCWGG	3 cut(s)	8, 359, 595
PspGI	CCWGG	3 cut(s)	8, 359, 595
PspPI	GGNCC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	3 cut(s)	57, 102, 383
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	10, 361, 597
SduI	GDGCHC	1 cut(s)	724
SetI	ASST	8 cut(s)	14, 89, 244, 362, 522, 539, 584, 601
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	2 cut(s)	103, 324
SfcI	CTRYAG	1 cut(s)	204
SnaBI	TACGTA	1 cut(s)	582
Sse9I	AATT	4 cut(s)	27, 111, 396, 569
SsiI	CCGC	2 cut(s)	172, 474
SspMI	CTAG	2 cut(s)	192, 467
StyD4I	CCNGG	3 cut(s)	8, 359, 595
TaiI	ACGT	3 cut(s)	89, 522, 584
TasI	AATT	4 cut(s)	27, 111, 396, 569
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	3 cut(s)	56, 101, 382
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	27, 569
XbaI	TCTAGA	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	578
XspI	CTAG	2 cut(s)	192, 467
ZraI	GACGTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.