RLG00000008863

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004636
Physical Location & Seq
Reverse (-)
41383504 .. 41385893
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008863

Sequence Viewer

Length: 522 bp
ATGGCAAATCAAGGTGCGAAGAAGCGCAAGGAAGAGAATGCCCGGCACATGGCGAATATCCGTCGCTTGATTGTGGCCTGCAATGTGATTTATGTGGTGGTAAGGTTGCTGGTCTTCCATTCTACTTTTACATGGAAAAACTGGGTTGCTTTGCTACTGACATCTGTAGCATATTACATTCCCTATCAACAACTTGCCCAAATGGCAAATCCTACTTATGCTGATAATGGGGAACTTCTGGATGGTGGATTTGATATGACTACTGGTGGAGTGTGTGGCTATTTACACGATGTAATCTACATTACAAGCTTCGTGCAAGTCATGTCCATAATCTCTGGAAAATTTTGGTACACATATCTGGTGATACCAGCTTTTGGAGGATACAAATCATTTGGTTCCATTAAAGGATTTTTGTCACAAGGTTCAGAGGGAGGCATAGAGGATGAAAAGACTCGGAAGAAGAGGGAAAAGATGGAGAAGAAGGCTTCAAGAGGCCAGTTTGTCAAGACAAGAAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

9.72

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 162 7.3e-57 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 49, 374
AgsI TTSAA 1 cut(s) 489
AluBI AGCT 2 cut(s) 309, 371
AluI AGCT 2 cut(s) 309, 371
AoxI GGCC 2 cut(s) 75, 493
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 106
BccI CCATC 2 cut(s) 236, 466
BciVI GTATCC 1 cut(s) 374
BcnI CCSGG 1 cut(s) 43
BfmI CTRYAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 374
Bse1I ACTGG 3 cut(s) 146, 268, 496
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 385
BseGI GGATG 2 cut(s) 247, 448
BseJI GATNNNNATC 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 49, 374
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 146, 268, 496
BshFI GGCC 2 cut(s) 77, 495
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 49, 374
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 2 cut(s) 77, 495
BspANI GGCC 2 cut(s) 77, 495
BspLI GGNNCC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 3 cut(s) 146, 268, 496
Bst6I CTCTTC 2 cut(s) 27, 455
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 2 cut(s) 247, 448
BstHHI GCGC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 106
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 2 cut(s) 77, 495
BtsCI GGATG 2 cut(s) 247, 448
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 49, 132, 322
CviJI RGCY 6 cut(s) 77, 279, 309, 371, 485, 495
CviKI_1 RGCY 6 cut(s) 77, 279, 309, 371, 485, 495
CviQI GTAC 1 cut(s) 349
Eam1104I CTCTTC 2 cut(s) 27, 455
EarI CTCTTC 2 cut(s) 27, 455
FaeI CATG 3 cut(s) 52, 135, 325
FatI CATG 3 cut(s) 48, 131, 321
FokI GGATG 2 cut(s) 254, 455
GlaI GCGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 77, 495
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 52, 135, 325
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 1 cut(s) 451
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 427, 456
Hpy188III TCNNGA 4 cut(s) 239, 336, 489, 505
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 81, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 3 cut(s) 52, 135, 325
HspAI GCGC 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 414
MboII GAAGA 6 cut(s) 31, 44, 106, 469, 472, 490
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 6 cut(s) 371, 421, 425, 433, 456, 485
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 43
NlaIII CATG 3 cut(s) 52, 135, 325
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 414
PctI GAATGC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 374
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 397
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 402
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 43
SetI ASST 5 cut(s) 16, 107, 311, 373, 424
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 41
TasI AATT 1 cut(s) 341
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseFI GTSAC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 1 cut(s) 50
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.