Rh5AG313500

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004636
Physical Location & Seq
Forward (+)
45334394 .. 45339799
5406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG313500.1

Sequence Viewer

Length: 783 bp
ATGGAGTCCAGGTTATTGGGCCACGAAATTCTCATGGCTACTATGCTTAATGGGGCTGCAAATATAGATGGGGCATTGCTTCTGACGTCTGAGCATCTTGCTGCTCTGAAAATTGTGCCACTTGTTCTGGGATCAATATATGCAACATATGTATTAGTGGGATATGATGATGATGGAGCCGATCATGAACTAAGGGTTTTGTTGCGGACGCTGATACATTCTGCTAGGGTAAGTCCTATAGAGAGGCATAGAGAGAGAGAGATGGCAAATCAAGGTGCAAAAAAGCGCAAGGAAGAGAATGCTCGGCACATGGCAAATATCCGTCTCCTGATTGTGGCCTGCAATGTGATGTATGTGGTAGTAAGGATGCTCATCTTCCATTCTACTTTTACCTGGAAAAACTGGGTTGCTTTGCTGCTGACATCTGTAATTTATTATATTCCCTATCAACAACTCGCCCAAATGGCAAATCCTTCTTATGCTGATGATGGCGAACTTCTAGATGGCGGATTTGATATGACCACTGGTGGAGTGTGTGGCTATTTACATGACGTAATCTACATTACAAGCTTCGTTCAAGTCATGTCCATAATCTCTGGAAAATTTTGGTATACGTATCTGCTGATACCAGGTTTTGGAGCATACAAATCATTTGGTTTCTTCAGAGGATTTATGTCCCAAAGTTCAGAGGGAGGCTTGGAGGATGAAAAGACACGAAAGAAGAGGGAAAAGATGGAAAAGAAGGCTTCAAGAGCCCAGTTTGTCAAGACAAGAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

260

Amino Acids

29.49

Weight (kDa)

9.19

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 88 - 249 3.4e-56 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 1 cut(s) 611
AciI CCGC 2 cut(s) 205, 507
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 2 cut(s) 27, 602
AcuI CTGAAG 1 cut(s) 646
AcyI GRCGYC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 334, 635
AgsI TTSAA 2 cut(s) 578, 750
AjnI CCWGG 3 cut(s) 8, 392, 628
AluBI AGCT 1 cut(s) 570
AluI AGCT 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 139
AoxI GGCC 2 cut(s) 19, 336
ApeKI GCWGC 3 cut(s) 56, 101, 415
ApoI RAATTY 2 cut(s) 27, 602
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 757
BbvI GCAGC 3 cut(s) 43, 88, 402
BccI CCATC 6 cut(s) 62, 167, 256, 482, 497, 727
BciT130I CCWGG 3 cut(s) 10, 394, 630
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 2 cut(s) 225, 500
BfmI CTRYAG 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 3 cut(s) 57, 102, 416
BlsI GCNGC 3 cut(s) 58, 103, 417
Bme1390I CCNGG 3 cut(s) 10, 394, 630
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 3 cut(s) 10, 394, 630
BmrI ACTGGG 2 cut(s) 412, 751
BmsI GCATC 2 cut(s) 103, 357
BmuI ACTGGG 2 cut(s) 412, 751
BsaAI YACGTR 1 cut(s) 615
BsaBI GATNNNNATC 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 86
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 635
Bse1I ACTGG 3 cut(s) 407, 529, 757
Bse3DI GCAATG 2 cut(s) 74, 349
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 3 cut(s) 10, 394, 630
BseGI GGATG 2 cut(s) 372, 709
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 2 cut(s) 334, 635
BseMI GCAATG 2 cut(s) 74, 349
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 3 cut(s) 407, 529, 757
BseXI GCAGC 3 cut(s) 43, 88, 402
BshFI GGCC 2 cut(s) 21, 338
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 2 cut(s) 334, 635
BsmAI GTCTC 1 cut(s) 329
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 21, 338
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 2 cut(s) 131, 181
BspACI CCGC 2 cut(s) 205, 507
BspANI GGCC 2 cut(s) 21, 338
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 74, 349
BsrI ACTGG 3 cut(s) 407, 529, 757
BssMI GATC 2 cut(s) 131, 181
BssNAI GTATAC 1 cut(s) 612
BssNI GRCGYC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 612
Bst2UI CCWGG 3 cut(s) 10, 394, 630
Bst6I CTCTTC 2 cut(s) 288, 716
BstACI GRCGYC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 615
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 2 cut(s) 90, 191
BstF5I GGATG 2 cut(s) 372, 709
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 2 cut(s) 134, 184
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 131, 181
BstMWI GCNNNNNNNGC 2 cut(s) 464, 752
BstNI CCWGG 3 cut(s) 10, 394, 630
BstSCI CCNGG 3 cut(s) 8, 392, 628
BstSFI CTRYAG 1 cut(s) 237
BstSNI TACGTA 1 cut(s) 615
BstV1I GCAGC 3 cut(s) 43, 88, 402
BstXI CCANNNNNNTGG 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 612
BsuRI GGCC 2 cut(s) 21, 338
BtsCI GGATG 2 cut(s) 372, 709
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 340
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 1 cut(s) 217
CsiI ACCWGGT 1 cut(s) 628
CviAII CATG 5 cut(s) 34, 185, 310, 548, 583
DdeI CTNAG 2 cut(s) 90, 191
DpnI GATC 2 cut(s) 133, 183
DpnII GATC 2 cut(s) 131, 181
Eam1104I CTCTTC 2 cut(s) 288, 716
EarI CTCTTC 2 cut(s) 288, 716
EciI GGCGGA 1 cut(s) 522
Eco105I TACGTA 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 757
Eco57I CTGAAG 1 cut(s) 646
EcoRII CCWGG 3 cut(s) 8, 392, 628
EcoT38I GRGCYC 1 cut(s) 757
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 5 cut(s) 37, 188, 313, 551, 586
FaqI GGGAC 1 cut(s) 661
FatI CATG 5 cut(s) 33, 184, 309, 547, 582
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 611
Fnu4HI GCNGC 3 cut(s) 57, 102, 416
FokI GGATG 2 cut(s) 379, 716
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 3 cut(s) 57, 102, 416
FspBI CTAG 2 cut(s) 225, 500
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 57, 102, 416
HaeIII GGCC 2 cut(s) 21, 338
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 5 cut(s) 37, 188, 313, 551, 586
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 612
Hpy188I TCNGA 5 cut(s) 84, 91, 108, 665, 688
Hpy188III TCNNGA 6 cut(s) 185, 328, 500, 597, 750, 766
Hpy8I GTNNAC 1 cut(s) 612
HpyAV CCTTC 2 cut(s) 483, 736
HpyCH4IV ACGT 3 cut(s) 86, 552, 614
HpyCH4V TGCA 4 cut(s) 59, 143, 278, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 752
HpyF3I CTNAG 2 cut(s) 90, 191
HpySE526I ACGT 3 cut(s) 86, 552, 614
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 5 cut(s) 37, 188, 313, 551, 586
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 131, 181
LmnI GCTCC 2 cut(s) 176, 638
Lsp1109I GCAGC 3 cut(s) 43, 88, 402
LweI GCATC 2 cut(s) 103, 357
MabI ACCWGGT 1 cut(s) 628
MaeI CTAG 2 cut(s) 225, 500
MaeII ACGT 3 cut(s) 86, 552, 614
MalI GATC 2 cut(s) 133, 183
MboI GATC 2 cut(s) 131, 181
MboII GAAGA 4 cut(s) 305, 367, 652, 733
MhlI GDGCHC 1 cut(s) 757
MluCI AATT 4 cut(s) 27, 111, 429, 602
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 237, 659, 682, 686, 694, 717
MseI TTAA 1 cut(s) 48
MspR9I CCNGG 3 cut(s) 10, 394, 630
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 3 cut(s) 10, 394, 630
MwoI GCNNNNNNNGC 2 cut(s) 464, 752
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 131, 181
NlaIII CATG 5 cut(s) 37, 188, 313, 551, 586
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 283
PagI TCATGA 1 cut(s) 184
PctI GAATGC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 3 cut(s) 58, 103, 417
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 615
Psp6I CCWGG 3 cut(s) 8, 392, 628
PspGI CCWGG 3 cut(s) 8, 392, 628
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 57, 102, 416
Sau3AI GATC 2 cut(s) 131, 181
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 10, 394, 630
SduI GDGCHC 1 cut(s) 757
SetI ASST 8 cut(s) 14, 89, 277, 395, 555, 572, 617, 634
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 2 cut(s) 103, 357
SfcI CTRYAG 1 cut(s) 237
SnaBI TACGTA 1 cut(s) 615
Sse9I AATT 4 cut(s) 27, 111, 429, 602
SsiI CCGC 2 cut(s) 205, 507
SspMI CTAG 2 cut(s) 225, 500
StyD4I CCNGG 3 cut(s) 8, 392, 628
TaiI ACGT 3 cut(s) 89, 555, 617
TasI AATT 4 cut(s) 27, 111, 429, 602
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 529
TseI GCWGC 3 cut(s) 56, 101, 415
TspDTI ATGAA 2 cut(s) 201, 720
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 529
Van91I CCANNNNNTGG 1 cut(s) 635
XapI RAATTY 2 cut(s) 27, 602
XbaI TCTAGA 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 611
XspI CTAG 2 cut(s) 225, 500
ZraI GACGTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.