Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Reverse (-)

10265271 .. 10267607

Gene Structure 2337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G24150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAGAGACGAAGATCGGCGAAGAAATCTCCGGCGATGGTGACGGTTACCGATTGGAAAGGGTTAGATTGCGGCGAAGAGACGAGAATCGTAAGGAGATTGATGAAGTTCGAAGACTTGCCTGAGTATTTGAAGGACAACGAGTTTATACACAACCATTATCGATGTCAATGGTCTCTCAAAGATACTTTTCTCAGTGCTTTCTCTTGGCACAACGAGACTCTCAACATTTGGACGCATTTAATTGGATTTGGTATATTTCTGTGGATGACGGTGGTGAGTTGCTTGGAGACGACGGAGATTAGTCTCGCCGGCGTTTTTAACGGCATGGCCGGAGTGAGGATTTGCCTCTCAAGCAATCAGACTCTGCTTCATGATTCGAACGTGACACATCACATCTCATGTCTTACCTCACAAGGAGAAGCTATTCCAAAATGGCCGTGGCTCGTGTACTTAGTCGGAGCAATGGGTTGTTTAATCTGCAGCTCTGTTTCACACCTCCTTGCTTGTCACTCAAAACGTTTCAACGTCTTCTTCTGGCGTTTGGACTACGCAGGAATATCACTTATGATCGTCGCTTCTTTCTTTGCACCAATCTACTACGCATTCTCCTGCCACCCTAACTTCCGTTTACTCTACTTATCCTCGATCTCGATCCTCGGTCTCCTCGCTATCATCACTCTCCTCTCTCCCGCTCTCTCTACGCCGCGTTTTAGACCTTTCAGAGCTAATCTTTTCCTTGCAATGGGATCATCTGCTGTGATACCTGCTACACATGTGCTTTGCCTTTACTGGGATCACCCTAATGTCTTCATCGCCCTCGGTTACGAGATTGCCACGGCTTTGTCGTATTTTGTGGGAGCAACGTTTTATGTCAGCCGTGTGCCTGAGAGATGGAAGCCTGGAGCGTTTGATATGGCGGGACATAGCCATCAGATTTTCCATGTGTTTGTAGTTATGGGTGCTCTTGCTCATTGTGTTACCACTCTTCTCATCATTGATTTTTCACGGGCTTCCCCTTCTTGTGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

344

Amino Acids

38.85

Weight (kDa)

8.7

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	46 - 237	1.3e-57	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	775
AccBSI	CCGCTC	1 cut(s)	695
AccII	CGCG	1 cut(s)	709
AciI	CCGC	4 cut(s)	72, 693, 707, 920
AclI	AACGTT	2 cut(s)	520, 866
AclWI	GGATC	3 cut(s)	649, 757, 804
AcoI	YGGCCR	2 cut(s)	330, 437
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	4 cut(s)	339, 745, 793, 1025
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	2 cut(s)	133, 526
AjnI	CCWGG	1 cut(s)	901
AluBI	AGCT	3 cut(s)	425, 486, 728
AluI	AGCT	3 cut(s)	425, 486, 728
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	6 cut(s)	74, 180, 212, 284, 311, 668
AlwI	GGATC	3 cut(s)	649, 757, 804
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	2 cut(s)	330, 437
ApeKI	GCWGC	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	426
AsuHPI	GGTGA	3 cut(s)	52, 289, 791
AsuII	TTCGAA	2 cut(s)	111, 380
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	3 cut(s)	120, 523, 802
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	1 cut(s)	495
BccI	CCATC	3 cut(s)	31, 888, 939
BceAI	ACGGC	4 cut(s)	340, 424, 855, 864
BciT130I	CCWGG	1 cut(s)	903
BcoDI	GTCTC	6 cut(s)	74, 180, 212, 284, 311, 668
BfmI	CTRYAG	1 cut(s)	481
BfuAI	ACCTGC	1 cut(s)	775
BisI	GCNGC	3 cut(s)	73, 484, 707
BlsI	GCNGC	3 cut(s)	74, 485, 708
Bme1390I	CCNGG	1 cut(s)	903
BmrFI	CCNGG	1 cut(s)	903
BmrI	ACTGGG	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	802
BpiI	GAAGAC	3 cut(s)	120, 523, 802
BpmI	CTGGAG	1 cut(s)	924
Bpu14I	TTCGAA	2 cut(s)	111, 380
BpuEI	CTTGAG	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	653
BsaI	GGTCTC	2 cut(s)	180, 668
BsaJI	CCNNGG	4 cut(s)	440, 658, 820, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 745, 793, 1025
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	797
Bse3DI	GCAATG	2 cut(s)	471, 750
Bse8I	GATNNNNATC	1 cut(s)	653
BseBI	CCWGG	1 cut(s)	903
BseCI	ATCGAT	1 cut(s)	163
BseDI	CCNNGG	4 cut(s)	440, 658, 820, 837
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	653
BseLI	CCNNNNNNNGG	4 cut(s)	339, 745, 793, 1025
BseMI	GCAATG	2 cut(s)	471, 750
BseMII	CTCAG	3 cut(s)	114, 208, 879
BseNI	ACTGG	1 cut(s)	797
BseRI	GAGGAG	2 cut(s)	656, 674
BseXI	GCAGC	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	709
BshFI	GGCC	2 cut(s)	332, 439
BshVI	ATCGAT	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	967
BsiSI	CCGG	3 cut(s)	32, 312, 333
BslFI	GGGAC	1 cut(s)	936
BslI	CCNNNNNNNGG	4 cut(s)	339, 745, 793, 1025
BsmAI	GTCTC	6 cut(s)	74, 180, 212, 284, 311, 668
BsmBI	CGTCTC	2 cut(s)	74, 284
BsmFI	GGGAC	1 cut(s)	936
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	332, 439
Bso31I	GGTCTC	2 cut(s)	180, 668
Bsp119I	TTCGAA	2 cut(s)	111, 380
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
BspACI	CCGC	4 cut(s)	72, 693, 707, 920
BspANI	GGCC	2 cut(s)	332, 439
BspCNI	CTCAG	3 cut(s)	115, 207, 880
BspDI	ATCGAT	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	709
BspHI	TCATGA	1 cut(s)	373
BspMAI	CTGCAG	1 cut(s)	485
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	3 cut(s)	649, 757, 804
BspT104I	TTCGAA	2 cut(s)	111, 380
BspTNI	GGTCTC	2 cut(s)	180, 668
BsrBI	CCGCTC	1 cut(s)	695
BsrDI	GCAATG	2 cut(s)	471, 750
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	797
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	440, 658, 820, 837
BssMI	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	2 cut(s)	46, 274
Bst6I	CTCTTC	2 cut(s)	72, 993
BstBI	TTCGAA	2 cut(s)	111, 380
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	4 cut(s)	123, 194, 454, 888
BstDSI	CCRYGG	2 cut(s)	440, 837
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	709
BstKTI	GATC	6 cut(s)	17, 573, 651, 657, 752, 799
BstMAI	GTCTC	6 cut(s)	74, 180, 212, 284, 311, 668
BstMBI	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstNI	CCWGG	1 cut(s)	903
BstNSI	RCATGY	1 cut(s)	779
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	901
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	1 cut(s)	709
BstV1I	GCAGC	1 cut(s)	495
BstV2I	GAAGAC	3 cut(s)	120, 523, 802
Bsu15I	ATCGAT	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	332, 439
BsuTUI	ATCGAT	1 cut(s)	163
BtgI	CCRYGG	2 cut(s)	440, 837
BtgZI	GCGATG	2 cut(s)	50, 799
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	367
CciI	TCATGA	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	163
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	5 cut(s)	328, 374, 402, 776, 944
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	4 cut(s)	123, 194, 454, 888
DpnI	GATC	6 cut(s)	16, 572, 650, 656, 751, 798
DpnII	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
EaeI	YGGCCR	2 cut(s)	330, 437
Eam1104I	CTCTTC	2 cut(s)	72, 993
EarI	CTCTTC	2 cut(s)	72, 993
Eco31I	GGTCTC	2 cut(s)	180, 668
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	901
Esp3I	CGTCTC	2 cut(s)	74, 284
FaeI	CATG	5 cut(s)	331, 377, 405, 779, 947
FaqI	GGGAC	1 cut(s)	936
FatI	CATG	5 cut(s)	327, 373, 401, 775, 943
FauI	CCCGC	2 cut(s)	700, 913
Fnu4HI	GCNGC	3 cut(s)	73, 484, 707
FokI	GGATG	1 cut(s)	280
Fsp4HI	GCNGC	3 cut(s)	73, 484, 707
GluI	GCNGC	3 cut(s)	73, 484, 707
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	2 cut(s)	332, 439
HapII	CCGG	3 cut(s)	32, 312, 333
HgaI	GACGC	1 cut(s)	244
Hin1II	CATG	5 cut(s)	331, 377, 405, 779, 947
HinfI	GANTC	4 cut(s)	87, 220, 364, 377
HpaII	CCGG	3 cut(s)	32, 312, 333
HphI	GGTGA	3 cut(s)	52, 289, 791
Hpy166II	GTNNAC	2 cut(s)	451, 632
Hpy188I	TCNGA	4 cut(s)	363, 461, 725, 936
Hpy188III	TCNNGA	2 cut(s)	374, 652
Hpy8I	GTNNAC	2 cut(s)	451, 632
Hpy99I	CGWCG	2 cut(s)	298, 578
HpyAV	CCTTC	2 cut(s)	127, 1029
HpyCH4III	ACNGT	2 cut(s)	46, 274
HpyCH4IV	ACGT	4 cut(s)	384, 520, 528, 866
HpyCH4V	TGCA	3 cut(s)	483, 590, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpyF3I	CTNAG	4 cut(s)	123, 194, 454, 888
HpySE526I	ACGT	4 cut(s)	384, 520, 528, 866
Hsp92II	CATG	5 cut(s)	331, 377, 405, 779, 947
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
LmnI	GCTCC	3 cut(s)	461, 860, 905
Lsp1109I	GCAGC	1 cut(s)	495
MaeII	ACGT	4 cut(s)	384, 520, 528, 866
MaeIII	GTNAC	6 cut(s)	40, 46, 385, 509, 824, 979
MalI	GATC	6 cut(s)	16, 572, 650, 656, 751, 798
MbiI	CCGCTC	1 cut(s)	695
MboI	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
MboII	GAAGA	9 cut(s)	16, 24, 34, 89, 125, 523, 526, 802, 980
MhlI	GDGCHC	1 cut(s)	967
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	214, 358
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	9 cut(s)	333, 359, 421, 509, 655, 668, 677, 695, 830
MreI	CGCCGGCG	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	3 cut(s)	242, 321, 476
MslI	CAYNNNNRTG	1 cut(s)	804
MspI	CCGG	3 cut(s)	32, 312, 333
MspR9I	CCNGG	1 cut(s)	903
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	709
MwoI	GCNNNNNNNGC	1 cut(s)	354
NaeI	GCCGGC	1 cut(s)	313
NdeII	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	5 cut(s)	331, 377, 405, 779, 947
NmuCI	GTSAC	3 cut(s)	40, 385, 509
NspI	RCATGY	1 cut(s)	779
NspV	TTCGAA	2 cut(s)	111, 380
PagI	TCATGA	1 cut(s)	373
PciI	ACATGT	1 cut(s)	775
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PctI	GAATGC	1 cut(s)	605
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	87, 377
PkrI	GCNGC	3 cut(s)	74, 485, 708
PleI	GAGTC	2 cut(s)	214, 358
PpsI	GAGTC	2 cut(s)	214, 358
PscI	ACATGT	1 cut(s)	775
Psp1406I	AACGTT	2 cut(s)	520, 866
Psp6I	CCWGG	1 cut(s)	901
PspEI	GGTNACC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	3 cut(s)	242, 321, 476
SatI	GCNGC	3 cut(s)	73, 484, 707
Sau3AI	GATC	6 cut(s)	14, 570, 648, 654, 749, 796
SchI	GAGTC	2 cut(s)	214, 358
ScrFI	CCNGG	1 cut(s)	903
SduI	GDGCHC	1 cut(s)	967
SfcI	CTRYAG	1 cut(s)	481
SfuI	TTCGAA	2 cut(s)	111, 380
SgrAI	CRCCGGYG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	4 cut(s)	72, 693, 707, 920
StyD4I	CCNGG	1 cut(s)	901
TaaI	ACNGT	2 cut(s)	46, 274
TaiI	ACGT	4 cut(s)	387, 523, 531, 869
TaqI	TCGA	5 cut(s)	111, 163, 380, 647, 653
TaqII	GACCGA	1 cut(s)	650
TasI	AATT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	2 cut(s)	75, 709
TfiI	GAWTC	2 cut(s)	87, 377
Tru1I	TTAA	3 cut(s)	242, 321, 476
Tru9I	TTAA	3 cut(s)	242, 321, 476
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	3 cut(s)	40, 385, 509
TseI	GCWGC	1 cut(s)	483
Tsp45I	GTSAC	3 cut(s)	40, 385, 509
TspDTI	ATGAA	4 cut(s)	17, 119, 362, 802
TspGWI	ACGGA	2 cut(s)	311, 617
TspRI	CASTG	1 cut(s)	202
XceI	RCATGY	1 cut(s)	779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.