Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Forward (+)

24861684 .. 24864475

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTGCAATCACGGGGCGAGGTCGGCGAAGAGTAGCAGCAGCAACAGCAGTAGTAGTCAGCAGCAGCAGCAGGAGAAGAAGAAGAAGAAGACGAGGATGCTGGTTAAGTTTAAAGACCTGCCACAGTATATGAAGGACAACGAGTACATACTGGACTATTACCGCTGCGAGTGGCCGTTAAAGGATGTCATCTTCAGCGTCTTTGCCTTGCACAACGAAACCCTCAACATCTGGACGCATTTGTTGGGGTTCTTGATATTCGTGGGACTAGCGGTGATGAGCTCGAAGGATATGGGAGCTCTGCTGGCGAATTTCTCCAGAGCAAGTTCATCGTTAGGTTACCGGGTCAGTTATTATTTATTGTTTTGTAGTGATTCACATTTGAAGCAAATGTCAGAGTCATTCATTTATGCTAACAAGGATGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAGACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCAATCCATACTCCCGCTTTTTCTATCTCTCTTCAATATCCATTCTTGGCGTCCTTGTCATCGTTACACTCCTTTCGCCGAGTCTCTCTGCACCCCGTTTCCGGACATTCAGGGCCACTCTCTTCCTCACCATGGGCTTCTCAGGTGTTATTCCTGCTGTTCATGCCCTTGTTATCCATTGGGACCATCAACCCGTAATTGCTGCTCTGGGGTATGAACTTGCTATGGCTATTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCAGAACGCTGGAAACCCGGTAAATTTGATATTGCGGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACATAGTGCTGCCACACTGGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

348

Amino Acids

39.49

Weight (kDa)

9.27

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	68 - 329	3e-63	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	726
AciI	CCGC	5 cut(s)	163, 272, 566, 640, 932
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	310, 920
AcuI	CTGAAG	1 cut(s)	178
AcyI	GRCGYC	2 cut(s)	553, 675
AdeI	CACNNNGTG	1 cut(s)	989
AfaI	GTAC	2 cut(s)	146, 436
AfiI	CCNNNNNNNGG	2 cut(s)	726, 757
AflII	CTTAAG	1 cut(s)	466
AgsI	TTSAA	3 cut(s)	385, 538, 660
AluBI	AGCT	5 cut(s)	282, 299, 447, 498, 875
AluI	AGCT	5 cut(s)	282, 299, 447, 498, 875
Alw21I	GWGCWC	3 cut(s)	284, 301, 979
Alw26I	GTCTC	1 cut(s)	713
Alw44I	GTGCAC	1 cut(s)	975
Aor13HI	TCCGGA	1 cut(s)	726
AoxI	GGCC	3 cut(s)	173, 449, 738
ApaLI	GTGCAC	1 cut(s)	975
ApoI	RAATTY	2 cut(s)	310, 920
AspS9I	GGNCC	2 cut(s)	738, 808
AsuC2I	CCSGG	3 cut(s)	344, 915, 1022
AsuHPI	GGTGA	2 cut(s)	286, 745
AvaII	GGWCC	1 cut(s)	808
BaeGI	GKGCMC	1 cut(s)	979
BanII	GRGCYC	2 cut(s)	284, 301
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	3 cut(s)	284, 301, 979
BccI	CCATC	3 cut(s)	419, 819, 951
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BciVI	GTATCC	1 cut(s)	888
BcnI	CCSGG	3 cut(s)	344, 915, 1022
BcoDI	GTCTC	1 cut(s)	713
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	493
BfrI	CTTAAG	1 cut(s)	466
BfuAI	ACCTGC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	888
BglI	GCCNNNNNGGC	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	948
Bme1390I	CCNGG	3 cut(s)	344, 915, 1022
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	738, 808
BmiI	GGNNCC	1 cut(s)	809
BmrFI	CCNGG	3 cut(s)	344, 915, 1022
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	2 cut(s)	301, 511
BpuMI	CCSGG	3 cut(s)	344, 915, 1022
BsaHI	GRCGYC	2 cut(s)	553, 675
BsaJI	CCNNGG	4 cut(s)	452, 756, 867, 1021
BsaWI	WCCGGW	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	2 cut(s)	726, 757
Bse1I	ACTGG	2 cut(s)	156, 1005
BseAI	TCCGGA	1 cut(s)	726
BseDI	CCNNGG	4 cut(s)	452, 756, 867, 1021
BseGI	GGATG	3 cut(s)	102, 190, 427
BseLI	CCNNNNNNNGG	2 cut(s)	726, 757
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	2 cut(s)	156, 1005
BseSI	GKGCMC	1 cut(s)	979
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	3 cut(s)	175, 451, 740
BsiHKAI	GWGCWC	3 cut(s)	284, 301, 979
BsiSI	CCGG	4 cut(s)	343, 727, 915, 1021
BslFI	GGGAC	3 cut(s)	279, 821, 948
BslI	CCNNNNNNNGG	2 cut(s)	726, 757
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	3 cut(s)	279, 821, 948
BsnI	GGCC	3 cut(s)	175, 451, 740
Bsp1286I	GDGCHC	3 cut(s)	284, 301, 979
Bsp13I	TCCGGA	1 cut(s)	726
Bsp143I	GATC	1 cut(s)	948
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	5 cut(s)	163, 272, 566, 640, 932
BspANI	GGCC	3 cut(s)	175, 451, 740
BspCNI	CTCAG	1 cut(s)	779
BspEI	TCCGGA	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	809
BspMAI	CTGCAG	1 cut(s)	497
BspMI	ACCTGC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	156, 1005
BssECI	CCNNGG	4 cut(s)	452, 756, 867, 1021
BssMI	GATC	1 cut(s)	948
BssNI	GRCGYC	2 cut(s)	553, 675
BssT1I	CCWWGG	2 cut(s)	452, 756
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	3 cut(s)	23, 661, 752
BstACI	GRCGYC	2 cut(s)	553, 675
BstAFI	CTTAAG	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	3 cut(s)	306, 449, 568
BstDEI	CTNAG	2 cut(s)	487, 766
BstDSI	CCRYGG	2 cut(s)	756, 867
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	102, 190, 427
BstKTI	GATC	1 cut(s)	951
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	1 cut(s)	948
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 45, 67, 305, 492, 788, 872, 989, 1001
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	342, 913, 1020
BstSFI	CTRYAG	1 cut(s)	493
BstSLI	GKGCMC	1 cut(s)	979
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	948
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	948
BsuI	GTATCC	1 cut(s)	888
BsuRI	GGCC	3 cut(s)	175, 451, 740
BtgI	CCRYGG	2 cut(s)	756, 867
BtsCI	GGATG	3 cut(s)	102, 190, 427
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	622, 998
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	306, 449, 568
Cfr13I	GGNCC	2 cut(s)	738, 808
CseI	GACGC	5 cut(s)	187, 244, 540, 542, 664
Csp6I	GTAC	2 cut(s)	145, 435
CviAII	CATG	4 cut(s)	757, 788, 956, 1009
CviQI	GTAC	2 cut(s)	145, 435
DdeI	CTNAG	2 cut(s)	487, 766
DpnI	GATC	1 cut(s)	950
DpnII	GATC	1 cut(s)	948
DraI	TTTAAA	1 cut(s)	112
DraIII	CACNNNGTG	1 cut(s)	989
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	3 cut(s)	23, 661, 752
EarI	CTCTTC	3 cut(s)	23, 661, 752
Ecl136II	GAGCTC	2 cut(s)	282, 299
Eco130I	CCWWGG	2 cut(s)	452, 756
Eco24I	GRGCYC	2 cut(s)	284, 301
Eco47I	GGWCC	1 cut(s)	808
Eco53kI	GAGCTC	2 cut(s)	282, 299
Eco57I	CTGAAG	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	338
EcoICRI	GAGCTC	2 cut(s)	282, 299
EcoO65I	GGTNACC	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	452, 756
EcoT38I	GRGCYC	2 cut(s)	284, 301
ErhI	CCWWGG	2 cut(s)	452, 756
FaeI	CATG	4 cut(s)	760, 791, 959, 1012
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	3 cut(s)	279, 821, 948
FatI	CATG	4 cut(s)	756, 787, 955, 1008
FauI	CCCGC	3 cut(s)	559, 647, 925
FokI	GGATG	3 cut(s)	109, 197, 434
FriOI	GRGCYC	2 cut(s)	284, 301
FspBI	CTAG	1 cut(s)	269
GsaI	CCCAGC	1 cut(s)	879
GsuI	CTGGAG	2 cut(s)	301, 511
HaeIII	GGCC	3 cut(s)	175, 451, 740
HapII	CCGG	4 cut(s)	343, 727, 915, 1021
HgaI	GACGC	5 cut(s)	187, 244, 540, 542, 664
Hin1I	GRCGYC	2 cut(s)	553, 675
Hin1II	CATG	4 cut(s)	760, 791, 959, 1012
HinfI	GANTC	3 cut(s)	374, 398, 706
HpaII	CCGG	4 cut(s)	343, 727, 915, 1021
HphI	GGTGA	2 cut(s)	286, 745
Hpy166II	GTNNAC	1 cut(s)	977
Hpy188I	TCNGA	2 cut(s)	397, 948
Hpy188III	TCNNGA	6 cut(s)	232, 253, 318, 528, 557, 727
Hpy8I	GTNNAC	1 cut(s)	977
HpyAV	CCTTC	4 cut(s)	127, 280, 604, 628
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	7 cut(s)	6, 211, 495, 627, 716, 977, 983
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 45, 67, 305, 492, 788, 872, 989, 1001
HpyF3I	CTNAG	2 cut(s)	487, 766
Hsp92I	GRCGYC	2 cut(s)	553, 675
Hsp92II	CATG	4 cut(s)	760, 791, 959, 1012
Kpn2I	TCCGGA	1 cut(s)	726
Kzo9I	GATC	1 cut(s)	948
LmnI	GCTCC	5 cut(s)	296, 503, 596, 607, 872
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	3 cut(s)	338, 521, 688
MalI	GATC	1 cut(s)	950
MboI	GATC	1 cut(s)	948
MflI	RGATCY	1 cut(s)	948
MhlI	GDGCHC	3 cut(s)	284, 301, 979
MluCI	AATT	4 cut(s)	310, 438, 822, 920
MlyI	GAGTC	2 cut(s)	407, 715
MnlI	CCTC	6 cut(s)	12, 87, 233, 512, 521, 761
MroI	TCCGGA	1 cut(s)	726
MseI	TTAA	4 cut(s)	105, 111, 179, 467
MspA1I	CMGCKG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	4 cut(s)	343, 727, 915, 1021
MspR9I	CCNGG	3 cut(s)	344, 915, 1022
MwoI	GCNNNNNNNGC	9 cut(s)	23, 45, 67, 305, 492, 788, 872, 989, 1001
NciI	CCSGG	3 cut(s)	344, 915, 1022
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	1 cut(s)	948
NlaIII	CATG	4 cut(s)	760, 791, 959, 1012
NlaIV	GGNNCC	1 cut(s)	809
NmeAIII	GCCGAG	1 cut(s)	729
NmuCI	GTSAC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	374
PleI	GAGTC	2 cut(s)	406, 714
PpsI	GAGTC	2 cut(s)	406, 714
Psp124BI	GAGCTC	2 cut(s)	284, 301
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	875
PspN4I	GGNNCC	1 cut(s)	809
PspPI	GGNCC	2 cut(s)	738, 808
PstI	CTGCAG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	948
RsaI	GTAC	2 cut(s)	146, 436
RsaNI	GTAC	2 cut(s)	145, 435
SacI	GAGCTC	2 cut(s)	284, 301
SaqAI	TTAA	4 cut(s)	105, 111, 179, 467
Sau3AI	GATC	1 cut(s)	948
Sau96I	GGNCC	2 cut(s)	738, 808
SchI	GAGTC	2 cut(s)	407, 715
ScrFI	CCNGG	3 cut(s)	344, 915, 1022
SduI	GDGCHC	3 cut(s)	284, 301, 979
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	493
SinI	GGWCC	1 cut(s)	808
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	4 cut(s)	310, 438, 822, 920
SsiI	CCGC	5 cut(s)	163, 272, 566, 640, 932
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	2 cut(s)	284, 301
StyD4I	CCNGG	3 cut(s)	342, 913, 1020
StyI	CCWWGG	2 cut(s)	452, 756
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	284
TasI	AATT	4 cut(s)	310, 438, 822, 920
TatI	WGTACW	2 cut(s)	144, 434
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	4 cut(s)	105, 111, 179, 467
Tru9I	TTAA	4 cut(s)	105, 111, 179, 467
TscAI	CASTG	2 cut(s)	629, 1005
TseFI	GTSAC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	5 cut(s)	146, 318, 394, 776, 855
TspRI	CASTG	2 cut(s)	629, 1005
Vha464I	CTTAAG	1 cut(s)	466
VneI	GTGCAC	1 cut(s)	975
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	2 cut(s)	310, 920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.