AT4G30850

Heptahelical transmembrane protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
15020182 .. 15022505
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30850.2

Sequence Viewer

Length: 1077 bp
ATGCAGAAACGGAGAACGGTGAAGGAATCTACGAAGATAAGAAATGGTAAAGGTATGGATTCCGGCGAAAAGAAGAGATCTGAGAAGAGATTGATGAAGTTCGAGGAGTTACCTAGGTATTTGAAAGATAACGAGTTCATACACAATCATTATCGATGTGAGTGGTCAATCAAAGAAACTTTCCTCAGCGCTTTCTCATGGCACAATGAGACTCTCAACATCTGGACGCATTTGTGTGGATTTGCGATATTTACTTGGATGATGGTTGTGAGTTCAATGGAGACGACGGAGCTTGGCCTCGCCGGCTTTGTTAGCCTTCTCTCCGGAGCAACAATTCGCTGGCCATGGCCGTCAATGGCAATGTCAAAAGATGTTTACTTCTCCAGCGATCAAACTCTGCATCACGACTTAAACGTGACACACACTCGCTCGCTCCTGAATTCTCAAGGAGATGTTAACTACGAAGCCATTCCGAAATGGCCATGGCTTGTGTTCTTGACCGGAGCAATGGGCTGCTTGATCTGCAGTTCCATGTCACACCTCTTCGCCTGTCACTCCAGACGGTTCAACCTCTTCTTCTGGCGTCTAGACTACGCTGGAATCTCCCTCATGATCGTCTGTTCATTCTTCGCACCTATCTACTATGCATTCTCATGCCACACTTACTGGCGACTCTTCTACCTCTCATCGATCTCAATCCTCGGTCTCCTCGCCATCTTCACTCTCCTCTCTCCATCACTCTCAGCTCCACGTTTCAGATCTTTCAGAGCAGCTCTGTTCCTAACAATGGGATTTTCTGGCGTAATACCAGCCACACATGTGCTTTACCTTCATAAGGATCACCCAAACGTGCTTATAGCTCTCGTATATGAACTTGCGATGGCTGTGTTGTATGCAACAGGAGCAGCGTTTTATGTTACCCGCATACCTGAAAGATGGAAGCCTGGGGCTTTTGATATTGCAGGACATAGCCATCAGATATTCCATGTGTTTGTAGTCTTAGGAGCTCTTGCTCATAGTGTTGCCAGTCTTCTTATCATGGATTTTCGACGGGCTTCTCCTTCTTGTGCCTTTTAA

Protein Analysis

358

Amino Acids

41.02

Weight (kDa)

9.23

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 65 - 339 2.3e-63 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 323
AciI CCGC 1 cut(s) 922
AclWI GGATC 1 cut(s) 846
AcoI YGGCCR 3 cut(s) 341, 347, 479
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 583
AfeI AGCGCT 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 787, 835
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 3 cut(s) 124, 276, 568
AjnI CCWGG 1 cut(s) 943
AleI CACNNNNGTG 1 cut(s) 818
AluBI AGCT 5 cut(s) 292, 746, 773, 860, 1007
AluI AGCT 5 cut(s) 292, 746, 773, 860, 1007
Alw21I GWGCWC 1 cut(s) 1009
Alw26I GTCTC 3 cut(s) 203, 275, 710
AlwI GGATC 1 cut(s) 846
Aor13HI TCCGGA 1 cut(s) 323
Aor51HI AGCGCT 1 cut(s) 190
AoxI GGCC 4 cut(s) 295, 341, 347, 479
ApeKI GCWGC 3 cut(s) 513, 770, 905
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 468
AspA2I CCTAGG 1 cut(s) 113
AspLEI GCGC 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 31, 833
AvrII CCTAGG 1 cut(s) 113
BalI TGGCCA 2 cut(s) 343, 481
BanII GRGCYC 1 cut(s) 1009
BbsI GAAGAC 1 cut(s) 1022
Bbv12I GWGCWC 1 cut(s) 1009
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 500, 782, 917
BccI CCATC 6 cut(s) 256, 722, 742, 874, 930, 981
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 945
BcoDI GTCTC 3 cut(s) 203, 275, 710
BfaI CTAG 2 cut(s) 114, 587
BfmI CTRYAG 1 cut(s) 523
BfoI RGCGCY 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 303
BglII AGATCT 2 cut(s) 77, 758
BisI GCNGC 3 cut(s) 514, 771, 906
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 3 cut(s) 515, 772, 907
Bme1390I CCNGG 1 cut(s) 945
BmrFI CCNGG 1 cut(s) 945
BmsI GCATC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 1022
BpmI CTGGAG 2 cut(s) 367, 541
Bpu10I CCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 429
Bsa29I ATCGAT 2 cut(s) 154, 689
BsaBI GATNNNNATC 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 583
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 5 cut(s) 113, 344, 482, 700, 944
BsaWI WCCGGW 2 cut(s) 323, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 787, 835
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 671, 1026
Bse3DI GCAATG 2 cut(s) 366, 513
Bse8I GATNNNNATC 1 cut(s) 695
BseAI TCCGGA 1 cut(s) 323
BseBI CCWGG 1 cut(s) 945
BseCI ATCGAT 2 cut(s) 154, 689
BseDI CCNNGG 5 cut(s) 113, 344, 482, 700, 944
BseGI GGATG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 695
BseLI CCNNNNNNNGG 2 cut(s) 787, 835
BseMI GCAATG 2 cut(s) 366, 513
BseMII CTCAG 3 cut(s) 72, 199, 756
BseNI ACTGG 2 cut(s) 671, 1026
BseRI GAGGAG 3 cut(s) 119, 698, 716
BseXI GCAGC 3 cut(s) 500, 782, 917
BshFI GGCC 4 cut(s) 297, 343, 349, 481
BshVI ATCGAT 2 cut(s) 154, 689
BsiHKAI GWGCWC 1 cut(s) 1009
BsiSI CCGG 4 cut(s) 63, 303, 324, 501
BslI CCNNNNNNNGG 2 cut(s) 787, 835
BsmAI GTCTC 3 cut(s) 203, 275, 710
BsmBI CGTCTC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 4 cut(s) 297, 343, 349, 481
Bso31I GGTCTC 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 1009
Bsp13I TCCGGA 1 cut(s) 323
Bsp143I GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
Bsp19I CCATGG 2 cut(s) 344, 482
BspACI CCGC 1 cut(s) 922
BspANI GGCC 4 cut(s) 297, 343, 349, 481
BspCNI CTCAG 3 cut(s) 73, 198, 755
BspDI ATCGAT 2 cut(s) 154, 689
BspEI TCCGGA 1 cut(s) 323
BspHI TCATGA 1 cut(s) 609
BspMAI CTGCAG 1 cut(s) 527
BspPI GGATC 1 cut(s) 846
BspTNI GGTCTC 1 cut(s) 710
BsrDI GCAATG 2 cut(s) 366, 513
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 671, 1026
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 113, 344, 482, 700, 944
BssMI GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
BssNI GRCGYC 1 cut(s) 583
BssT1I CCWWGG 3 cut(s) 113, 344, 482
Bst2UI CCWGG 1 cut(s) 945
Bst4CI ACNGT 2 cut(s) 19, 564
Bst6I CTCTTC 5 cut(s) 68, 80, 548, 578, 680
BstACI GRCGYC 1 cut(s) 583
BstC8I GCNNGC 3 cut(s) 304, 341, 431
BstDEI CTNAG 4 cut(s) 81, 185, 742, 1000
BstDSI CCRYGG 2 cut(s) 344, 482
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 7 cut(s) 80, 391, 522, 615, 693, 761, 841
BstMAI GTCTC 3 cut(s) 203, 275, 710
BstMBI GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
BstMWI GCNNNNNNNGC 4 cut(s) 303, 312, 522, 902
BstNI CCWGG 1 cut(s) 945
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 943
BstSFI CTRYAG 1 cut(s) 523
BstV1I GCAGC 3 cut(s) 500, 782, 917
BstV2I GAAGAC 1 cut(s) 1022
BstX2I RGATCY 2 cut(s) 77, 758
BstYI RGATCY 2 cut(s) 77, 758
Bsu15I ATCGAT 2 cut(s) 154, 689
BsuRI GGCC 4 cut(s) 297, 343, 349, 481
BsuTUI ATCGAT 2 cut(s) 154, 689
BtgI CCRYGG 2 cut(s) 344, 482
BtgZI GCGATG 1 cut(s) 893
BtsCI GGATG 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 304, 341, 431
CciI TCATGA 1 cut(s) 609
CfoI GCGC 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 302
ClaI ATCGAT 2 cut(s) 154, 689
CseI GACGC 2 cut(s) 235, 572
CviAII CATG 9 cut(s) 198, 345, 483, 532, 610, 654, 818, 986, 1039
DdeI CTNAG 4 cut(s) 81, 185, 742, 1000
DpnI GATC 7 cut(s) 79, 390, 521, 614, 692, 760, 840
DpnII GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
EaeI YGGCCR 3 cut(s) 341, 347, 479
Eam1104I CTCTTC 5 cut(s) 68, 80, 548, 578, 680
EarI CTCTTC 5 cut(s) 68, 80, 548, 578, 680
Ecl136II GAGCTC 1 cut(s) 1007
Eco130I CCWWGG 3 cut(s) 113, 344, 482
Eco24I GRGCYC 1 cut(s) 1009
Eco31I GGTCTC 1 cut(s) 710
Eco47III AGCGCT 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 1007
EcoICRI GAGCTC 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 943
EcoT14I CCWWGG 3 cut(s) 113, 344, 482
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 1009
ErhI CCWWGG 3 cut(s) 113, 344, 482
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 9 cut(s) 201, 348, 486, 535, 613, 657, 821, 989, 1042
FatI CATG 9 cut(s) 197, 344, 482, 531, 609, 653, 817, 985, 1038
FauI CCCGC 1 cut(s) 929
Fnu4HI GCNGC 3 cut(s) 514, 771, 906
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 1009
Fsp4HI GCNGC 3 cut(s) 514, 771, 906
FspBI CTAG 2 cut(s) 114, 587
GlaI GCGC 1 cut(s) 190
GluI GCNGC 3 cut(s) 514, 771, 906
GsuI CTGGAG 2 cut(s) 367, 541
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 4 cut(s) 297, 343, 349, 481
HapII CCGG 4 cut(s) 63, 303, 324, 501
HgaI GACGC 2 cut(s) 235, 572
HhaI GCGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 9 cut(s) 201, 348, 486, 535, 613, 657, 821, 989, 1042
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 5 cut(s) 26, 59, 211, 600, 672
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 4 cut(s) 63, 303, 324, 501
HphI GGTGA 2 cut(s) 31, 833
Hpy166II GTNNAC 2 cut(s) 376, 457
Hpy188I TCNGA 5 cut(s) 82, 474, 758, 767, 978
Hpy188III TCNNGA 8 cut(s) 223, 324, 404, 436, 496, 558, 587, 610
Hpy8I GTNNAC 2 cut(s) 376, 457
Hpy99I CGWCG 2 cut(s) 289, 1053
HpyAV CCTTC 4 cut(s) 16, 326, 839, 1071
HpyCH4III ACNGT 2 cut(s) 19, 564
HpyCH4IV ACGT 3 cut(s) 414, 751, 849
HpyCH4V TGCA 6 cut(s) 4, 400, 525, 647, 896, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 303, 312, 522, 902
HpyF3I CTNAG 4 cut(s) 81, 185, 742, 1000
HpySE526I ACGT 3 cut(s) 414, 751, 849
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 9 cut(s) 201, 348, 486, 535, 613, 657, 821, 989, 1042
HspAI GCGC 1 cut(s) 189
Kpn2I TCCGGA 1 cut(s) 323
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
LmnI GCTCC 7 cut(s) 289, 326, 438, 503, 751, 902, 1004
Lsp1109I GCAGC 3 cut(s) 500, 782, 917
LweI GCATC 1 cut(s) 409
MaeI CTAG 2 cut(s) 114, 587
MaeII ACGT 3 cut(s) 414, 751, 849
MaeIII GTNAC 5 cut(s) 108, 415, 534, 551, 916
MalI GATC 7 cut(s) 79, 390, 521, 614, 692, 760, 840
MboI GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
MflI RGATCY 2 cut(s) 77, 758
MhlI GDGCHC 1 cut(s) 1009
MlsI TGGCCA 2 cut(s) 343, 481
MluCI AATT 2 cut(s) 333, 439
MluNI TGGCCA 2 cut(s) 343, 481
MlyI GAGTC 2 cut(s) 205, 666
Mox20I TGGCCA 2 cut(s) 343, 481
Mph1103I ATGCAT 1 cut(s) 649
MroI TCCGGA 1 cut(s) 323
MroNI GCCGGC 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 2 cut(s) 343, 481
MseI TTAA 3 cut(s) 410, 456, 1075
MslI CAYNNNNRTG 3 cut(s) 234, 652, 818
Msp20I TGGCCA 2 cut(s) 343, 481
MspI CCGG 4 cut(s) 63, 303, 324, 501
MspR9I CCNGG 1 cut(s) 945
Mva1269I GAATGC 1 cut(s) 647
MvaI CCWGG 1 cut(s) 945
MwoI GCNNNNNNNGC 4 cut(s) 303, 312, 522, 902
NaeI GCCGGC 1 cut(s) 304
NcoI CCATGG 2 cut(s) 344, 482
NdeII GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 9 cut(s) 201, 348, 486, 535, 613, 657, 821, 989, 1042
NmuCI GTSAC 3 cut(s) 415, 534, 551
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 821
OliI CACNNNNGTG 1 cut(s) 818
PagI TCATGA 1 cut(s) 609
PciI ACATGT 1 cut(s) 817
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 1 cut(s) 647
PdiI GCCGGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 3 cut(s) 26, 59, 600
PkrI GCNGC 3 cut(s) 515, 772, 907
PleI GAGTC 2 cut(s) 205, 666
PpsI GAGTC 2 cut(s) 205, 666
PscI ACATGT 1 cut(s) 817
Psp124BI GAGCTC 1 cut(s) 1009
Psp6I CCWGG 1 cut(s) 943
PspGI CCWGG 1 cut(s) 943
PstI CTGCAG 1 cut(s) 527
PsuI RGATCY 2 cut(s) 77, 758
RseI CAYNNNNRTG 3 cut(s) 234, 652, 818
SacI GAGCTC 1 cut(s) 1009
SaqAI TTAA 3 cut(s) 410, 456, 1075
SatI GCNGC 3 cut(s) 514, 771, 906
Sau3AI GATC 7 cut(s) 77, 388, 519, 612, 690, 758, 838
SchI GAGTC 2 cut(s) 205, 666
ScrFI CCNGG 1 cut(s) 945
SduI GDGCHC 1 cut(s) 1009
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 523
SmiMI CAYNNNNRTG 3 cut(s) 234, 652, 818
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 2 cut(s) 333, 439
SsiI CCGC 1 cut(s) 922
SspMI CTAG 2 cut(s) 114, 587
SstI GAGCTC 1 cut(s) 1009
StyD4I CCNGG 1 cut(s) 943
StyI CCWWGG 3 cut(s) 113, 344, 482
TaaI ACNGT 2 cut(s) 19, 564
TaiI ACGT 3 cut(s) 417, 754, 852
TaqI TCGA 4 cut(s) 102, 154, 689, 1048
TaqII GACCGA 1 cut(s) 692
TasI AATT 2 cut(s) 333, 439
TfiI GAWTC 3 cut(s) 26, 59, 600
Tru1I TTAA 3 cut(s) 410, 456, 1075
Tru9I TTAA 3 cut(s) 410, 456, 1075
TseFI GTSAC 3 cut(s) 415, 534, 551
TseI GCWGC 3 cut(s) 513, 770, 905
Tsp45I GTSAC 3 cut(s) 415, 534, 551
TspDTI ATGAA 5 cut(s) 110, 127, 612, 821, 885
TspGWI ACGGA 2 cut(s) 25, 302
XagI CCTNNNNNAGG 1 cut(s) 833
XapI RAATTY 1 cut(s) 439
XbaI TCTAGA 1 cut(s) 586
XceI RCATGY 1 cut(s) 821
XmaJI CCTAGG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 2 cut(s) 114, 587
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.