Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8267361.1

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Reverse (-)

198 .. 767

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8267361.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgggctgcttagtctgcagctccctctcccacctctttgcttgtcactccagacgcttcaactatttcttttggcgtctggactatgcgggcatttcccttatgatagtttgctccttctttgctcccatatactataccttccactgcaatccatactcccgctttttctatctctcttcaatatccattcttggcgtccttgtcatcgttacactcctttcgccgagtctctctgcaccccgtttccggacattcagggccactctcttcctcaccatgggcttctcaggtgttattcctgctgttcatgcccttgttatccattgggaccatcaacccataattgctgctctggggtatgaacttgctatggctattttttatgccacgggagctgggttctatgttagtaggataccagaacgctggaaacccggtaaatttgatattgcaggacacagccatcagatcttccatgtgtttgttgtgttaggtgcacttgcacatagtgctgccacactagcagtcatggattttcgccggggattgccaacctgtgtatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

189

Amino Acids

21.26

Weight (kDa)

9.3

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	2 cut(s)	89, 163
AcsI	RAATTY	1 cut(s)	443
AcyI	GRCGYC	2 cut(s)	76, 198
AdeI	CACNNNGTG	1 cut(s)	512
AfiI	CCNNNNNNNGG	2 cut(s)	249, 280
AgsI	TTSAA	2 cut(s)	61, 183
AluBI	AGCT	2 cut(s)	21, 398
AluI	AGCT	2 cut(s)	21, 398
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	236
Alw44I	GTGCAC	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	4 cut(s)	6, 18, 350, 515
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	2 cut(s)	261, 331
AsuC2I	CCSGG	2 cut(s)	438, 545
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	30, 337, 502
BccI	CCATC	2 cut(s)	342, 474
BciVI	GTATCC	1 cut(s)	411
BcnI	CCSGG	2 cut(s)	438, 545
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	471
BisI	GCNGC	4 cut(s)	7, 19, 351, 516
BlsI	GCNGC	4 cut(s)	8, 20, 352, 517
Bme1390I	CCNGG	2 cut(s)	438, 545
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	261, 331
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	438, 545
BpmI	CTGGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	438, 545
BsaHI	GRCGYC	2 cut(s)	76, 198
BsaJI	CCNNGG	3 cut(s)	279, 390, 544
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 280
BseAI	TCCGGA	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	279, 390, 544
BseLI	CCNNNNNNNGG	2 cut(s)	249, 280
BseMII	CTCAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	3 cut(s)	30, 337, 502
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	3 cut(s)	250, 438, 544
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	249, 280
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	2 cut(s)	89, 163
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	302
BspEI	TCCGGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	279, 390, 544
BssMI	GATC	1 cut(s)	471
BssNI	GRCGYC	2 cut(s)	76, 198
BssT1I	CCWWGG	1 cut(s)	279
Bst6I	CTCTTC	2 cut(s)	184, 275
BstACI	GRCGYC	2 cut(s)	76, 198
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	10, 289
BstDSI	CCRYGG	2 cut(s)	279, 390
BstKTI	GATC	1 cut(s)	474
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 311, 395, 512, 524
BstSCI	CCNGG	2 cut(s)	436, 543
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	30, 337, 502
BstX2I	RGATCY	1 cut(s)	471
BstXI	CCANNNNNNTGG	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	2 cut(s)	279, 390
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	261, 331
CseI	GACGC	3 cut(s)	63, 65, 187
CviAII	CATG	4 cut(s)	280, 311, 479, 532
CviJI	RGCY	7 cut(s)	6, 21, 263, 285, 377, 398, 465
CviKI_1	RGCY	7 cut(s)	6, 21, 263, 285, 377, 398, 465
DdeI	CTNAG	2 cut(s)	10, 289
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
DraIII	CACNNNGTG	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	184, 275
EarI	CTCTTC	2 cut(s)	184, 275
Eco130I	CCWWGG	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	4 cut(s)	283, 314, 482, 535
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	279, 310, 478, 531
FauI	CCCGC	2 cut(s)	82, 170
Fnu4HI	GCNGC	4 cut(s)	7, 19, 351, 516
Fsp4HI	GCNGC	4 cut(s)	7, 19, 351, 516
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	4 cut(s)	7, 19, 351, 516
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	3 cut(s)	250, 438, 544
HgaI	GACGC	3 cut(s)	63, 65, 187
Hin1I	GRCGYC	2 cut(s)	76, 198
Hin1II	CATG	4 cut(s)	283, 314, 482, 535
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	250, 438, 544
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	3 cut(s)	51, 80, 250
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	2 cut(s)	127, 151
HpyCH4V	TGCA	6 cut(s)	18, 150, 239, 455, 500, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 311, 395, 512, 524
HpyF3I	CTNAG	2 cut(s)	10, 289
Hsp92I	GRCGYC	2 cut(s)	76, 198
Hsp92II	CATG	4 cut(s)	283, 314, 482, 535
Kpn2I	TCCGGA	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	471
LmnI	GCTCC	4 cut(s)	26, 119, 130, 395
Lsp1109I	GCAGC	3 cut(s)	30, 337, 502
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	2 cut(s)	44, 211
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	3 cut(s)	171, 262, 466
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	2 cut(s)	345, 443
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	35, 44, 284
MroI	TCCGGA	1 cut(s)	249
MspI	CCGG	3 cut(s)	250, 438, 544
MspR9I	CCNGG	2 cut(s)	438, 545
MwoI	GCNNNNNNNGC	5 cut(s)	15, 311, 395, 512, 524
NciI	CCSGG	2 cut(s)	438, 545
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	471
NlaIII	CATG	4 cut(s)	283, 314, 482, 535
NlaIV	GGNNCC	1 cut(s)	332
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	8, 20, 352, 517
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	261, 331
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	471
SatI	GCNGC	4 cut(s)	7, 19, 351, 516
Sau3AI	GATC	1 cut(s)	471
Sau96I	GGNCC	2 cut(s)	261, 331
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	438, 545
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	7 cut(s)	23, 36, 143, 295, 400, 499, 560
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	331
Sse9I	AATT	2 cut(s)	345, 443
SsiI	CCGC	2 cut(s)	89, 163
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	436, 543
StyI	CCWWGG	1 cut(s)	279
TasI	AATT	2 cut(s)	345, 443
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	4 cut(s)	6, 18, 350, 515
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	299, 378
TspRI	CASTG	1 cut(s)	152
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	443
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.