FvH4_6g47370

Haemolysin-III related

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
35909161 .. 35911790
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47370.t1

Sequence Viewer

Length: 1074 bp
ATGTGCAATCACGGGAAGAGTAGTAGCGGGAAGCAGCAGCAGCAGAAGAAGAGTGGGAATTACAAAAAGGAAAAGAAGAAGACGACGATGCTGGTAAAGTTTCAGGACCTGCCACAGTATATGAAGGACAACGAGTACATATTGGACTATTACCGCTGCGAGTGGCCGTTAAAGGATGTAATCTTCAGTGTCTTCGCCTGGCACAACGAGACCCTCAACATCTGGACGCATTTGTTGGGGTTCTTGATATTCGTGGGACTAACGGTGATGAGCTGGAGAGACCTGGGAGCTCTGCTCGGGAATTTCTCGAGGGATGGGGTTTCTGGGCCGTTGATGATGATGAGCATGATGATGAAGATGAACCAGCTTAATGTCTCCGACAGTGTTTTCGCTCCGAATTCACATTTGAAGGAAATGTCACAGTCATCATTCATTCATGGTAGCAAGGAAGATGGTTTTAGCACAATTCCAAGCTGGCCTTGGTTTGTGTTTTTAACTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTATCCCACCTCTTTGCTTGTCACTCTAAACGCTTCAACTTTTTCTTTTGGCGTCTCGACTATGCGGGCATTTCCCTTATGATTGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCCATCCATACTCTCGCTTCTTCTATCTTTCTTCCATATCTGTTCTCGGTGTCCTTGTCATCATTACACTCCTCTCGCGGAGTCTCTCCACACCTCGTTTCCGGACATTCAGGGCCACACTCTTCCTCTGCATGGGTTTCTCAGGTGTCATTCCTGCTGTTCACGCCCTTGTTATCCATTGGGACCATAAACCCATAATTGTTGCTCTAGGGTATGAACTTGCTATGGCTGTTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCGGAACGCTGGAAACCCGGTAAATTTGATATAGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACACAGTGCTGCCACACTAACTGTCATGGATTTTCGCCGGGAATCACCAACCTGTGTATATTAG

Protein Analysis

358

Amino Acids

40.79

Weight (kDa)

9.27

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 65 - 338 6.9e-62 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
AccII CGCG 1 cut(s) 730
AccIII TCCGGA 1 cut(s) 753
AciI CCGC 4 cut(s) 27, 154, 593, 730
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 3 cut(s) 301, 397, 947
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 1 cut(s) 580
AdeI CACNNNGTG 1 cut(s) 1016
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 784
AgsI TTSAA 2 cut(s) 409, 565
AjnI CCWGG 2 cut(s) 197, 282
AluBI AGCT 6 cut(s) 273, 290, 367, 474, 525, 902
AluI AGCT 6 cut(s) 273, 290, 367, 474, 525, 902
Alw21I GWGCWC 2 cut(s) 292, 1006
Alw26I GTCTC 5 cut(s) 203, 273, 379, 587, 740
Alw44I GTGCAC 1 cut(s) 1002
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 2 cut(s) 296, 307
Aor13HI TCCGGA 1 cut(s) 753
AoxI GGCC 4 cut(s) 164, 326, 476, 765
ApaLI GTGCAC 1 cut(s) 1002
ApeKI GCWGC 7 cut(s) 34, 37, 40, 156, 510, 522, 1019
ApoI RAATTY 3 cut(s) 301, 397, 947
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspS9I GGNCC 4 cut(s) 106, 326, 765, 835
AsuC2I CCSGG 2 cut(s) 942, 1049
AsuHPI GGTGA 2 cut(s) 277, 1047
AvaI CYCGRG 2 cut(s) 296, 307
AvaII GGWCC 2 cut(s) 106, 835
BaeGI GKGCMC 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 86, 184
Bbv12I GWGCWC 2 cut(s) 292, 1006
BbvI GCAGC 7 cut(s) 46, 49, 52, 143, 497, 534, 1006
BccI CCATC 4 cut(s) 308, 446, 663, 978
BceAI ACGGC 2 cut(s) 151, 313
BciT130I CCWGG 2 cut(s) 199, 284
BciVI GTATCC 1 cut(s) 915
BcnI CCSGG 2 cut(s) 942, 1049
BcoDI GTCTC 5 cut(s) 203, 273, 379, 587, 740
BfaI CTAG 1 cut(s) 860
BfmI CTRYAG 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 915
BglII AGATCT 1 cut(s) 975
BisI GCNGC 7 cut(s) 35, 38, 41, 157, 511, 523, 1020
BlsI GCNGC 7 cut(s) 36, 39, 42, 158, 512, 524, 1021
Bme1390I CCNGG 4 cut(s) 199, 284, 942, 1049
Bme18I GGWCC 2 cut(s) 106, 835
BmeT110I CYCGRG 2 cut(s) 296, 307
BmgT120I GGNCC 4 cut(s) 106, 326, 765, 835
BmiI GGNNCC 1 cut(s) 836
BmrFI CCNGG 4 cut(s) 199, 284, 942, 1049
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 2 cut(s) 86, 184
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 1 cut(s) 295
BpuMI CCSGG 2 cut(s) 942, 1049
BsaHI GRCGYC 1 cut(s) 580
BsaI GGTCTC 2 cut(s) 203, 273
BsaJI CCNNGG 3 cut(s) 283, 479, 894
BsaWI WCCGGW 2 cut(s) 753, 925
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse1I ACTGG 1 cut(s) 502
BseAI TCCGGA 1 cut(s) 753
BseBI CCWGG 2 cut(s) 199, 284
BseDI CCNNGG 3 cut(s) 283, 479, 894
BseGI GGATG 3 cut(s) 181, 319, 655
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 713
BseSI GKGCMC 1 cut(s) 1006
BseXI GCAGC 7 cut(s) 46, 49, 52, 143, 497, 534, 1006
BseYI CCCAGC 1 cut(s) 902
Bsh1236I CGCG 1 cut(s) 730
BshFI GGCC 4 cut(s) 166, 328, 478, 767
BsiHKAI GWGCWC 2 cut(s) 292, 1006
BsiHKCI CYCGRG 2 cut(s) 296, 307
BsiSI CCGG 4 cut(s) 754, 926, 942, 1048
BslFI GGGAC 2 cut(s) 270, 848
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 5 cut(s) 203, 273, 379, 587, 740
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 2 cut(s) 270, 848
BsnI GGCC 4 cut(s) 166, 328, 478, 767
Bso31I GGTCTC 2 cut(s) 203, 273
BsoBI CYCGRG 2 cut(s) 296, 307
Bsp1286I GDGCHC 2 cut(s) 292, 1006
Bsp13I TCCGGA 1 cut(s) 753
Bsp143I GATC 1 cut(s) 975
BspACI CCGC 4 cut(s) 27, 154, 593, 730
BspANI GGCC 4 cut(s) 166, 328, 478, 767
BspCNI CTCAG 1 cut(s) 806
BspEI TCCGGA 1 cut(s) 753
BspFNI CGCG 1 cut(s) 730
BspLI GGNNCC 1 cut(s) 836
BspMAI CTGCAG 1 cut(s) 524
BspMI ACCTGC 1 cut(s) 117
BspTNI GGTCTC 2 cut(s) 203, 273
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 3 cut(s) 283, 479, 894
BssMI GATC 1 cut(s) 975
BssNI GRCGYC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 2 cut(s) 199, 284
Bst4CI ACNGT 6 cut(s) 117, 265, 383, 423, 1016, 1033
Bst6I CTCTTC 3 cut(s) 11, 44, 779
BstACI GRCGYC 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstC8I GCNNGC 2 cut(s) 476, 595
BstDEI CTNAG 2 cut(s) 514, 793
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 3 cut(s) 181, 319, 655
BstFNI CGCG 1 cut(s) 730
BstKTI GATC 1 cut(s) 978
BstMAI GTCTC 5 cut(s) 203, 273, 379, 587, 740
BstMBI GATC 1 cut(s) 975
BstMWI GCNNNNNNNGC 5 cut(s) 40, 519, 815, 899, 1016
BstNI CCWGG 2 cut(s) 199, 284
BstSCI CCNGG 4 cut(s) 197, 282, 940, 1047
BstSFI CTRYAG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 1 cut(s) 730
BstV1I GCAGC 7 cut(s) 46, 49, 52, 143, 497, 534, 1006
BstV2I GAAGAC 2 cut(s) 86, 184
BstX2I RGATCY 1 cut(s) 975
BstYI RGATCY 1 cut(s) 975
BsuI GTATCC 1 cut(s) 915
BsuRI GGCC 4 cut(s) 166, 328, 478, 767
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 3 cut(s) 181, 319, 655
BtsI GCAGTG 1 cut(s) 649
BtsIMutI CAGTG 4 cut(s) 193, 388, 649, 1021
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 476, 595
CaiI CAGNNNCTG 1 cut(s) 109
Cfr13I GGNCC 4 cut(s) 106, 326, 765, 835
CseI GACGC 2 cut(s) 235, 569
Csp6I GTAC 1 cut(s) 136
CviAII CATG 5 cut(s) 346, 437, 784, 983, 1036
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 514, 793
DpnI GATC 1 cut(s) 977
DpnII GATC 1 cut(s) 975
DraIII CACNNNGTG 1 cut(s) 1016
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 3 cut(s) 11, 44, 779
EarI CTCTTC 3 cut(s) 11, 44, 779
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 203, 273
Eco47I GGWCC 2 cut(s) 106, 835
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 2 cut(s) 296, 307
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 197, 282
EcoT14I CCWWGG 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 5 cut(s) 349, 440, 787, 986, 1039
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FaqI GGGAC 2 cut(s) 270, 848
FatI CATG 5 cut(s) 345, 436, 783, 982, 1035
FauI CCCGC 2 cut(s) 20, 586
Fnu4HI GCNGC 7 cut(s) 35, 38, 41, 157, 511, 523, 1020
FokI GGATG 3 cut(s) 188, 326, 642
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 7 cut(s) 35, 38, 41, 157, 511, 523, 1020
FspBI CTAG 1 cut(s) 860
GluI GCNGC 7 cut(s) 35, 38, 41, 157, 511, 523, 1020
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 4 cut(s) 166, 328, 478, 767
HapII CCGG 4 cut(s) 754, 926, 942, 1048
HgaI GACGC 2 cut(s) 235, 569
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 5 cut(s) 349, 440, 787, 986, 1039
HinfI GANTC 2 cut(s) 733, 1052
HpaII CCGG 4 cut(s) 754, 926, 942, 1048
HphI GGTGA 2 cut(s) 277, 1047
Hpy166II GTNNAC 2 cut(s) 814, 1004
Hpy188I TCNGA 3 cut(s) 379, 396, 975
Hpy188III TCNNGA 7 cut(s) 104, 223, 244, 298, 307, 584, 754
Hpy8I GTNNAC 2 cut(s) 814, 1004
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 4 cut(s) 118, 403, 631, 655
HpyCH4III ACNGT 6 cut(s) 117, 265, 383, 423, 1016, 1033
HpyCH4V TGCA 5 cut(s) 6, 522, 783, 1004, 1010
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 519, 815, 899, 1016
HpyF3I CTNAG 2 cut(s) 514, 793
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 5 cut(s) 349, 440, 787, 986, 1039
Kpn2I TCCGGA 1 cut(s) 753
Kzo9I GATC 1 cut(s) 975
LmnI GCTCC 6 cut(s) 287, 397, 530, 623, 634, 899
Lsp1109I GCAGC 7 cut(s) 46, 49, 52, 143, 497, 534, 1006
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 860
MaeIII GTNAC 2 cut(s) 417, 548
MalI GATC 1 cut(s) 977
MboI GATC 1 cut(s) 975
MflI RGATCY 1 cut(s) 975
MhlI GDGCHC 2 cut(s) 292, 1006
MluCI AATT 6 cut(s) 58, 301, 397, 465, 849, 947
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 6 cut(s) 224, 303, 548, 734, 756, 788
MroI TCCGGA 1 cut(s) 753
MseI TTAA 3 cut(s) 170, 369, 494
MslI CAYNNNNRTG 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 4 cut(s) 754, 926, 942, 1048
MspR9I CCNGG 4 cut(s) 199, 284, 942, 1049
MvaI CCWGG 2 cut(s) 199, 284
MvnI CGCG 1 cut(s) 730
MwoI GCNNNNNNNGC 5 cut(s) 40, 519, 815, 899, 1016
NciI CCSGG 2 cut(s) 942, 1049
NdeII GATC 1 cut(s) 975
NlaIII CATG 5 cut(s) 349, 440, 787, 986, 1039
NlaIV GGNNCC 1 cut(s) 836
NmuCI GTSAC 2 cut(s) 417, 548
PaeR7I CTCGAG 1 cut(s) 307
PfeI GAWTC 1 cut(s) 1052
PkrI GCNGC 7 cut(s) 36, 39, 42, 158, 512, 524, 1021
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 197, 282
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 2 cut(s) 197, 282
PspN4I GGNNCC 1 cut(s) 836
PspPI GGNCC 4 cut(s) 106, 326, 765, 835
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 975
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 350
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 3 cut(s) 170, 369, 494
SatI GCNGC 7 cut(s) 35, 38, 41, 157, 511, 523, 1020
Sau3AI GATC 1 cut(s) 975
Sau96I GGNCC 4 cut(s) 106, 326, 765, 835
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 4 cut(s) 199, 284, 942, 1049
SduI GDGCHC 2 cut(s) 292, 1006
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 520
Sfr274I CTCGAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 106, 835
SlaI CTCGAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 6 cut(s) 58, 301, 397, 465, 849, 947
SsiI CCGC 4 cut(s) 27, 154, 593, 730
SspMI CTAG 1 cut(s) 860
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 4 cut(s) 197, 282, 940, 1047
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 6 cut(s) 117, 265, 383, 423, 1016, 1033
TaqI TCGA 2 cut(s) 308, 585
TasI AATT 6 cut(s) 58, 301, 397, 465, 849, 947
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 3 cut(s) 170, 369, 494
Tru9I TTAA 3 cut(s) 170, 369, 494
TscAI CASTG 4 cut(s) 193, 388, 656, 1021
TseFI GTSAC 2 cut(s) 417, 548
TseI GCWGC 7 cut(s) 34, 37, 40, 156, 510, 522, 1019
Tsp45I GTSAC 2 cut(s) 417, 548
TspDTI ATGAA 6 cut(s) 137, 368, 374, 421, 425, 882
TspRI CASTG 4 cut(s) 193, 388, 656, 1021
VneI GTGCAC 1 cut(s) 1002
VpaK11BI GGWCC 2 cut(s) 106, 835
XapI RAATTY 3 cut(s) 301, 397, 947
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XhoI CTCGAG 1 cut(s) 307
XspI CTAG 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.