Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Forward (+)

23337716 .. 23340820

Gene Structure 3105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTGCATTCACGGGGCGAAGTCGGCGAAGAGTAGCAGCAGCAACAGCAGTAGTAACCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGAAGAAGAAGAAGACGAGGATGCTGGTTAAGTTTAAAGACCTGCCACAGTATATGAAGGACAACGAGTACATACTGGACTATTACCGCTGCGAGTGGCCGTTAAAGGATGTCATCTTCAGCGTCTTTGCCTGGCACAACGAAACCCTCAACATCTGGACGCATTTGTTGGGGTTCTTGATATTCGTGGGACTAGCGGTGATGAGCTCGAAGGATATGGGAGCTCTGCTGGGGAATTTCTCCAGGGCTTCGGTTTCTGGGCCGTCGATGATGAAGATGAACCAACTTAATGTCTCCGAAGCTCTATTTGCTCCGGATTCACATCTGAAGCAAATGTCAGAGTCATTCATTTATGCTAACAAGGATGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAGACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCAATCCATACTCTCGCTTGTTCTATCTCTCTTCAATATCCATTCTTGGTGTCCTTGTCATCATTACACTCCTTTCGCCGAGTCTCTCTGCACCCCGTTTCCGGACATTCAGGGCCACTCTCTTCCTCACCATGGGCTTCTCAGGTGTTATTCCTGCTGTCCATGCCCTTGTTATCCATTGGGACCATCAACCCATAATTGCTGCTCTGGGGTATGAACTTGCTATGGCTATTTTTTATGCCACGGGAGCTGGGTTTTATGTTAGTAGGATACCAGAACGCTGGAAGCCCGGTAAATTTGATATTGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACACAGTGCTGCCACACTAGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

359

Amino Acids

40.7

Weight (kDa)

9.32

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	73 - 340	3.4e-63	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccIII	TCCGGA	2 cut(s)	403, 759
AciI	CCGC	3 cut(s)	178, 287, 599
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	325, 953
AcuI	CTGAAG	2 cut(s)	193, 437
AcyI	GRCGYC	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	1022
AfaI	GTAC	2 cut(s)	161, 469
AfiI	CCNNNNNNNGG	2 cut(s)	759, 790
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	571, 693
AjnI	CCWGG	2 cut(s)	221, 332
AluBI	AGCT	6 cut(s)	297, 314, 392, 480, 531, 908
AluI	AGCT	6 cut(s)	297, 314, 392, 480, 531, 908
Alw21I	GWGCWC	3 cut(s)	299, 316, 1012
Alw26I	GTCTC	2 cut(s)	388, 746
Alw44I	GTGCAC	1 cut(s)	1008
Aor13HI	TCCGGA	2 cut(s)	403, 759
AoxI	GGCC	4 cut(s)	188, 350, 482, 771
ApaLI	GTGCAC	1 cut(s)	1008
ApoI	RAATTY	2 cut(s)	325, 953
AspS9I	GGNCC	3 cut(s)	350, 771, 841
AsuC2I	CCSGG	2 cut(s)	948, 1055
AsuHPI	GGTGA	2 cut(s)	301, 778
AvaII	GGWCC	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	1012
BanII	GRGCYC	2 cut(s)	299, 316
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	3 cut(s)	299, 316, 1012
BccI	CCATC	3 cut(s)	452, 852, 984
BceAI	ACGGC	2 cut(s)	175, 337
BciT130I	CCWGG	2 cut(s)	223, 334
BciVI	GTATCC	1 cut(s)	921
BcnI	CCSGG	2 cut(s)	948, 1055
BcoDI	GTCTC	2 cut(s)	388, 746
BfaI	CTAG	2 cut(s)	284, 1034
BfmI	CTRYAG	1 cut(s)	526
BfrI	CTTAAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	921
BglII	AGATCT	1 cut(s)	981
Bme1390I	CCNGG	4 cut(s)	223, 334, 948, 1055
Bme18I	GGWCC	1 cut(s)	841
BmgT120I	GGNCC	3 cut(s)	350, 771, 841
BmiI	GGNNCC	1 cut(s)	842
BmrFI	CCNGG	4 cut(s)	223, 334, 948, 1055
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	316, 544
BpuMI	CCSGG	2 cut(s)	948, 1055
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	586
BsaJI	CCNNGG	5 cut(s)	333, 485, 789, 900, 1054
BsaWI	WCCGGW	2 cut(s)	403, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	759, 790
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	2 cut(s)	403, 759
BseBI	CCWGG	2 cut(s)	223, 334
BseDI	CCNNGG	5 cut(s)	333, 485, 789, 900, 1054
BseGI	GGATG	3 cut(s)	117, 205, 460
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	759, 790
BseMII	CTCAG	1 cut(s)	813
BseNI	ACTGG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	1012
BseYI	CCCAGC	2 cut(s)	319, 908
BsgI	GTGCAG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	190, 352, 484, 773
BsiHKAI	GWGCWC	3 cut(s)	299, 316, 1012
BsiSI	CCGG	5 cut(s)	58, 404, 760, 948, 1054
BslFI	GGGAC	2 cut(s)	294, 854
BslI	CCNNNNNNNGG	2 cut(s)	759, 790
BsmAI	GTCTC	2 cut(s)	388, 746
BsmFI	GGGAC	2 cut(s)	294, 854
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	4 cut(s)	190, 352, 484, 773
Bsp1286I	GDGCHC	3 cut(s)	299, 316, 1012
Bsp13I	TCCGGA	2 cut(s)	403, 759
Bsp143I	GATC	1 cut(s)	981
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	3 cut(s)	178, 287, 599
BspANI	GGCC	4 cut(s)	190, 352, 484, 773
BspCNI	CTCAG	1 cut(s)	812
BspEI	TCCGGA	2 cut(s)	403, 759
BspLI	GGNNCC	1 cut(s)	842
BspMAI	CTGCAG	1 cut(s)	530
BspMI	ACCTGC	1 cut(s)	141
BspTI	CTTAAG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	5 cut(s)	333, 485, 789, 900, 1054
BssMI	GATC	1 cut(s)	981
BssNI	GRCGYC	1 cut(s)	586
BssT1I	CCWWGG	2 cut(s)	485, 789
Bst2UI	CCWGG	2 cut(s)	223, 334
Bst4CI	ACNGT	2 cut(s)	141, 1022
Bst6I	CTCTTC	3 cut(s)	23, 694, 785
BstACI	GRCGYC	1 cut(s)	586
BstAFI	CTTAAG	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstC8I	GCNNGC	2 cut(s)	482, 601
BstDEI	CTNAG	2 cut(s)	520, 799
BstDSI	CCRYGG	2 cut(s)	789, 900
BstF5I	GGATG	3 cut(s)	117, 205, 460
BstKTI	GATC	1 cut(s)	984
BstMAI	GTCTC	2 cut(s)	388, 746
BstMBI	GATC	1 cut(s)	981
BstNI	CCWGG	2 cut(s)	223, 334
BstSCI	CCNGG	4 cut(s)	221, 332, 946, 1053
BstSFI	CTRYAG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	1012
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	981
BstXI	CCANNNNNNTGG	1 cut(s)	939
BstYI	RGATCY	1 cut(s)	981
BsuI	GTATCC	1 cut(s)	921
BsuRI	GGCC	4 cut(s)	190, 352, 484, 773
BtgI	CCRYGG	2 cut(s)	789, 900
BtsCI	GGATG	3 cut(s)	117, 205, 460
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	655, 1027
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	482, 601
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	3 cut(s)	350, 771, 841
CseI	GACGC	4 cut(s)	202, 259, 573, 575
Csp6I	GTAC	2 cut(s)	160, 468
CviAII	CATG	4 cut(s)	790, 821, 989, 1042
CviQI	GTAC	2 cut(s)	160, 468
DdeI	CTNAG	2 cut(s)	520, 799
DpnI	GATC	1 cut(s)	983
DpnII	GATC	1 cut(s)	981
DraI	TTTAAA	1 cut(s)	127
DraIII	CACNNNGTG	1 cut(s)	1022
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	3 cut(s)	23, 694, 785
EarI	CTCTTC	3 cut(s)	23, 694, 785
Ecl136II	GAGCTC	2 cut(s)	297, 314
Eco130I	CCWWGG	2 cut(s)	485, 789
Eco24I	GRGCYC	2 cut(s)	299, 316
Eco47I	GGWCC	1 cut(s)	841
Eco53kI	GAGCTC	2 cut(s)	297, 314
Eco57I	CTGAAG	2 cut(s)	193, 437
EcoICRI	GAGCTC	2 cut(s)	297, 314
EcoRII	CCWGG	2 cut(s)	221, 332
EcoT14I	CCWWGG	2 cut(s)	485, 789
EcoT38I	GRGCYC	2 cut(s)	299, 316
ErhI	CCWWGG	2 cut(s)	485, 789
FaeI	CATG	4 cut(s)	793, 824, 992, 1045
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	2 cut(s)	294, 854
FatI	CATG	4 cut(s)	789, 820, 988, 1041
FauI	CCCGC	1 cut(s)	592
FokI	GGATG	3 cut(s)	124, 212, 467
FriOI	GRGCYC	2 cut(s)	299, 316
FspBI	CTAG	2 cut(s)	284, 1034
GsaI	CCCAGC	2 cut(s)	323, 912
GsuI	CTGGAG	2 cut(s)	316, 544
HaeIII	GGCC	4 cut(s)	190, 352, 484, 773
HapII	CCGG	5 cut(s)	58, 404, 760, 948, 1054
HgaI	GACGC	4 cut(s)	202, 259, 573, 575
Hin1I	GRCGYC	1 cut(s)	586
Hin1II	CATG	4 cut(s)	793, 824, 992, 1045
HinfI	GANTC	3 cut(s)	407, 431, 739
HpaII	CCGG	5 cut(s)	58, 404, 760, 948, 1054
HphI	GGTGA	2 cut(s)	301, 778
Hpy166II	GTNNAC	1 cut(s)	1010
Hpy188I	TCNGA	4 cut(s)	388, 417, 430, 981
Hpy188III	TCNNGA	6 cut(s)	247, 268, 404, 561, 590, 760
Hpy8I	GTNNAC	1 cut(s)	1010
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	4 cut(s)	142, 295, 637, 661
HpyCH4III	ACNGT	2 cut(s)	141, 1022
HpyCH4V	TGCA	7 cut(s)	6, 528, 660, 749, 965, 1010, 1016
HpyF3I	CTNAG	2 cut(s)	520, 799
Hsp92I	GRCGYC	1 cut(s)	586
Hsp92II	CATG	4 cut(s)	793, 824, 992, 1045
Kpn2I	TCCGGA	2 cut(s)	403, 759
Kzo9I	GATC	1 cut(s)	981
LmnI	GCTCC	6 cut(s)	311, 406, 536, 629, 640, 905
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	284, 1034
MaeIII	GTNAC	2 cut(s)	53, 554
MalI	GATC	1 cut(s)	983
MboI	GATC	1 cut(s)	981
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	3 cut(s)	299, 316, 1012
MluCI	AATT	4 cut(s)	325, 471, 855, 953
MlyI	GAGTC	2 cut(s)	440, 748
MnlI	CCTC	5 cut(s)	102, 248, 545, 554, 794
MroI	TCCGGA	2 cut(s)	403, 759
MseI	TTAA	5 cut(s)	120, 126, 194, 378, 500
MspA1I	CMGCKG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	5 cut(s)	58, 404, 760, 948, 1054
MspR9I	CCNGG	4 cut(s)	223, 334, 948, 1055
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	2 cut(s)	223, 334
NciI	CCSGG	2 cut(s)	948, 1055
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	1 cut(s)	981
NlaIII	CATG	4 cut(s)	793, 824, 992, 1045
NlaIV	GGNNCC	1 cut(s)	842
NmeAIII	GCCGAG	1 cut(s)	762
NmuCI	GTSAC	1 cut(s)	554
PctI	GAATGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	407
PleI	GAGTC	2 cut(s)	439, 747
PpsI	GAGTC	2 cut(s)	439, 747
Psp124BI	GAGCTC	2 cut(s)	299, 316
Psp6I	CCWGG	2 cut(s)	221, 332
PspFI	CCCAGC	2 cut(s)	319, 908
PspGI	CCWGG	2 cut(s)	221, 332
PspN4I	GGNNCC	1 cut(s)	842
PspPI	GGNCC	3 cut(s)	350, 771, 841
PstI	CTGCAG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	981
RsaI	GTAC	2 cut(s)	161, 469
RsaNI	GTAC	2 cut(s)	160, 468
SacI	GAGCTC	2 cut(s)	299, 316
SaqAI	TTAA	5 cut(s)	120, 126, 194, 378, 500
Sau3AI	GATC	1 cut(s)	981
Sau96I	GGNCC	3 cut(s)	350, 771, 841
SchI	GAGTC	2 cut(s)	440, 748
ScrFI	CCNGG	4 cut(s)	223, 334, 948, 1055
SduI	GDGCHC	3 cut(s)	299, 316, 1012
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	526
SinI	GGWCC	1 cut(s)	841
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	4 cut(s)	325, 471, 855, 953
SsiI	CCGC	3 cut(s)	178, 287, 599
SspMI	CTAG	2 cut(s)	284, 1034
SstI	GAGCTC	2 cut(s)	299, 316
StyD4I	CCNGG	4 cut(s)	221, 332, 946, 1053
StyI	CCWWGG	2 cut(s)	485, 789
TaaI	ACNGT	2 cut(s)	141, 1022
TaqI	TCGA	2 cut(s)	299, 356
TasI	AATT	4 cut(s)	325, 471, 855, 953
TatI	WGTACW	2 cut(s)	159, 467
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	5 cut(s)	120, 126, 194, 378, 500
Tru9I	TTAA	5 cut(s)	120, 126, 194, 378, 500
TscAI	CASTG	2 cut(s)	662, 1027
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	5 cut(s)	161, 377, 383, 427, 888
TspRI	CASTG	2 cut(s)	662, 1027
Vha464I	CTTAAG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	1008
VpaK11BI	GGWCC	1 cut(s)	841
XapI	RAATTY	2 cut(s)	325, 953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XspI	CTAG	2 cut(s)	284, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.