Prupe.1G101700_v2.0.a1

Haemolysin-III related

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
8120954 .. 8125826
4873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G101700.2

Sequence Viewer

Length: 1095 bp
ATGTGCAACCACGGGAAGCGAGAGGAGTCGGAGACGAAGACGAAGACGACGAAGCAACAGAAGGTGAAGAGTGTTAAGAAGAAGATGACGTTGATGAAGTTCCAGGACCTTCCGCAGTACATGAAGGACAACGAGTTCATATTGGACTATTACAGGTGCGAGTGGCCATTGAACGACGTCGTCTTCAGCCTCTTCGCCTGGCACAACGAAACCCTCAACATCTGGACGCATTTGGTGGGGTTCTTGATATTCGTGGGACTAACGGTGATGAGCTTGAGGGACGACACGGAGCTCGGAGGTCTGCTCGGTAATTTATGCAGGGCTTCGGTTTCTGGACCGTTGATGATGATGACCGTTATGAAGATGACGGACCTTAACATCTCCTCTACTCAGAATGTACAATTTCCTCCTCCGGATTCACATTTGAGGCAAATTTCACTGGCATCATCAATAATTCATGCAAACAAGGAAAATGGTTATGATGCTATTCCAAGATGGCCTTGGTTTGTGTTCTTAAGTGGGGCTATGGGGTGCTTAGTTTGCAGTTCCCTCTCCCACCTCCTTGCTTGTCACTCCAATCGCTTCAATTTTTTCTTCTGGCGCCTAGACTATGCCGGGATTTCGCTTATGATAGTCTGTTCCTTCTTTGCTCCCATTTACTATTGCTTCTCCTGCAATCCATACTCTCGGTTTTTCTATCTTTCTTCAATATCTGTGCTTGGAATCCTTGCCATCGTTACCCTTCTTTCGCCTAGTCTCTCTGCACCCCGTTTCCGGTCATTCAGGGCTACTCTTTTTCTCTCCATGGGCTTCTCCGGGGTGATTCCGGTAGTTCATGCCCTAGTTCTCCACTGGGGCAATCAACATATATTTGTTGCGCTGGGATATGAGCTTGCTATGGCTATTTTTTATGCTTCAGGAGCTGCATTCTACGTTAGTCGGATACCAGAACGCTGGAAGCCTGGTAAATTTGATCTTGCAGGGCACAGCCATCAGATCTTCCATGTCTTTGTTGTCCTCGGCGCACTTGCACACAGCGCTGCCACACTGGTTGTTATGGATTTTCGCCGGGGATCACCAACCTGTGGATATTAG

Protein Analysis

365

Amino Acids

41.21

Weight (kDa)

9.04

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 600
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 1081
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 2 cut(s) 432, 968
AcuI CTGAAG 2 cut(s) 169, 900
AcyI GRCGYC 2 cut(s) 177, 601
AfaI GTAC 2 cut(s) 119, 399
AfeI AGCGCT 1 cut(s) 1039
AfiI CCNNNNNNNGG 2 cut(s) 774, 1085
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 3 cut(s) 172, 586, 708
AjnI CCWGG 3 cut(s) 102, 197, 961
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 273, 292, 892, 923
AluI AGCT 4 cut(s) 273, 292, 892, 923
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 26, 761
AlwI GGATC 1 cut(s) 1081
AlwNI CAGNNNCTG 1 cut(s) 923
Aor13HI TCCGGA 1 cut(s) 412
Aor51HI AGCGCT 1 cut(s) 1039
AoxI GGCC 2 cut(s) 164, 497
ApeKI GCWGC 2 cut(s) 923, 1040
ApoI RAATTY 2 cut(s) 432, 968
AspLEI GCGC 4 cut(s) 603, 880, 1025, 1040
AspS9I GGNCC 3 cut(s) 106, 335, 370
AsuC2I CCSGG 3 cut(s) 616, 817, 1070
AsuHPI GGTGA 4 cut(s) 76, 277, 832, 1068
AvaII GGWCC 3 cut(s) 106, 335, 370
BaeGI GKGCMC 1 cut(s) 987
BalI TGGCCA 1 cut(s) 166
BanI GGYRCC 1 cut(s) 600
BanII GRGCYC 1 cut(s) 294
BbsI GAAGAC 3 cut(s) 44, 50, 175
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 910, 1027
BccI CCATC 3 cut(s) 489, 740, 999
BciT130I CCWGG 3 cut(s) 104, 199, 963
BciVI GTATCC 1 cut(s) 936
BcnI CCSGG 3 cut(s) 616, 817, 1070
BcoDI GTCTC 2 cut(s) 26, 761
BfaI CTAG 3 cut(s) 605, 753, 842
BfoI RGCGCY 2 cut(s) 604, 1041
BfrI CTTAAG 1 cut(s) 514
BfuI GTATCC 1 cut(s) 936
BglII AGATCT 1 cut(s) 996
BisI GCNGC 2 cut(s) 924, 1041
BlsI GCNGC 2 cut(s) 925, 1042
Bme1390I CCNGG 6 cut(s) 104, 199, 616, 817, 963, 1070
Bme18I GGWCC 3 cut(s) 106, 335, 370
BmgT120I GGNCC 3 cut(s) 106, 335, 370
BmiI GGNNCC 1 cut(s) 602
BmrFI CCNGG 6 cut(s) 104, 199, 616, 817, 963, 1070
BmrI ACTGGG 1 cut(s) 862
BmsI GCATC 2 cut(s) 452, 472
BmuI ACTGGG 1 cut(s) 862
BpiI GAAGAC 3 cut(s) 44, 50, 175
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 3 cut(s) 616, 817, 1070
BsaHI GRCGYC 2 cut(s) 177, 601
BsaJI CCNNGG 6 cut(s) 10, 500, 804, 816, 1018, 1069
BsaWI WCCGGW 3 cut(s) 412, 774, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 774, 1085
Bse1I ACTGG 3 cut(s) 444, 857, 1053
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 3 cut(s) 104, 199, 963
BseDI CCNNGG 6 cut(s) 10, 500, 804, 816, 1018, 1069
BseLI CCNNNNNNNGG 2 cut(s) 774, 1085
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 3 cut(s) 444, 857, 1053
BseRI GAGGAG 3 cut(s) 38, 373, 399
BseSI GKGCMC 1 cut(s) 987
BseXI GCAGC 2 cut(s) 910, 1027
BseYI CCCAGC 1 cut(s) 880
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 2 cut(s) 166, 499
BshNI GGYRCC 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 6 cut(s) 413, 615, 775, 816, 827, 1069
BslFI GGGAC 2 cut(s) 270, 293
BslI CCNNNNNNNGG 2 cut(s) 774, 1085
BsmAI GTCTC 2 cut(s) 26, 761
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 270, 293
BsmI GAATGC 1 cut(s) 926
BsnI GGCC 2 cut(s) 166, 499
Bsp1286I GDGCHC 2 cut(s) 294, 987
Bsp13I TCCGGA 1 cut(s) 412
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 3 cut(s) 973, 996, 1073
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 166, 499
BspCNI CTCAG 1 cut(s) 403
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 602
BspPI GGATC 1 cut(s) 1081
BspT107I GGYRCC 1 cut(s) 600
BspTI CTTAAG 1 cut(s) 514
BsrGI TGTACA 1 cut(s) 397
BsrI ACTGG 3 cut(s) 444, 857, 1053
BssECI CCNNGG 6 cut(s) 10, 500, 804, 816, 1018, 1069
BssMI GATC 3 cut(s) 973, 996, 1073
BssNI GRCGYC 2 cut(s) 177, 601
BssT1I CCWWGG 2 cut(s) 500, 804
Bst2UI CCWGG 3 cut(s) 104, 199, 963
Bst4CI ACNGT 3 cut(s) 265, 339, 355
Bst6I CTCTTC 2 cut(s) 62, 197
BstACI GRCGYC 2 cut(s) 177, 601
BstAFI CTTAAG 1 cut(s) 514
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 894
BstDEI CTNAG 2 cut(s) 390, 535
BstDSI CCRYGG 2 cut(s) 10, 804
BstH2I RGCGCY 2 cut(s) 604, 1041
BstHHI GCGC 4 cut(s) 603, 880, 1025, 1040
BstKTI GATC 3 cut(s) 976, 999, 1076
BstMAI GTCTC 2 cut(s) 26, 761
BstMBI GATC 3 cut(s) 973, 996, 1073
BstMWI GCNNNNNNNGC 4 cut(s) 540, 672, 920, 1037
BstNI CCWGG 3 cut(s) 104, 199, 963
BstSCI CCNGG 6 cut(s) 102, 197, 614, 815, 961, 1068
BstSLI GKGCMC 1 cut(s) 987
BstV1I GCAGC 2 cut(s) 910, 1027
BstV2I GAAGAC 3 cut(s) 44, 50, 175
BstX2I RGATCY 1 cut(s) 996
BstXI CCANNNNNNTGG 1 cut(s) 954
BstYI RGATCY 1 cut(s) 996
BsuI GTATCC 1 cut(s) 936
BsuRI GGCC 2 cut(s) 166, 499
BtgI CCRYGG 2 cut(s) 10, 804
BtsIMutI CAGTG 3 cut(s) 437, 850, 1046
Cac8I GCNNGC 1 cut(s) 894
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 4 cut(s) 603, 880, 1025, 1040
Cfr13I GGNCC 3 cut(s) 106, 335, 370
CseI GACGC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 118, 398
CspCI CAANNNNNGTGG 2 cut(s) 1033, 1068
CviAII CATG 5 cut(s) 121, 458, 805, 836, 1004
CviQI GTAC 2 cut(s) 118, 398
DdeI CTNAG 2 cut(s) 390, 535
DinI GGCGCC 1 cut(s) 602
DpnI GATC 3 cut(s) 975, 998, 1075
DpnII GATC 3 cut(s) 973, 996, 1073
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 2 cut(s) 62, 197
EarI CTCTTC 2 cut(s) 62, 197
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 500, 804
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 3 cut(s) 106, 335, 370
Eco47III AGCGCT 1 cut(s) 1039
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 2 cut(s) 169, 900
EcoICRI GAGCTC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 102, 197, 961
EcoT14I CCWWGG 2 cut(s) 500, 804
EcoT38I GRGCYC 1 cut(s) 294
EgeI GGCGCC 1 cut(s) 602
EheI GGCGCC 1 cut(s) 602
ErhI CCWWGG 2 cut(s) 500, 804
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 5 cut(s) 124, 461, 808, 839, 1007
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FaqI GGGAC 2 cut(s) 270, 293
FatI CATG 5 cut(s) 120, 457, 804, 835, 1003
Fnu4HI GCNGC 2 cut(s) 924, 1041
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 924, 1041
FspBI CTAG 3 cut(s) 605, 753, 842
GlaI GCGC 4 cut(s) 602, 879, 1024, 1039
GluI GCNGC 2 cut(s) 924, 1041
GsaI CCCAGC 1 cut(s) 884
HaeII RGCGCY 2 cut(s) 604, 1041
HaeIII GGCC 2 cut(s) 166, 499
HapII CCGG 6 cut(s) 413, 615, 775, 816, 827, 1069
HgaI GACGC 1 cut(s) 235
HhaI GCGC 4 cut(s) 603, 880, 1025, 1040
Hin1I GRCGYC 2 cut(s) 177, 601
Hin1II CATG 5 cut(s) 124, 461, 808, 839, 1007
Hin6I GCGC 4 cut(s) 601, 878, 1023, 1038
HinP1I GCGC 4 cut(s) 601, 878, 1023, 1038
HinfI GANTC 4 cut(s) 26, 416, 723, 823
HpaII CCGG 6 cut(s) 413, 615, 775, 816, 827, 1069
HphI GGTGA 4 cut(s) 76, 277, 832, 1068
Hpy188I TCNGA 5 cut(s) 31, 296, 393, 942, 996
Hpy188III TCNNGA 5 cut(s) 223, 244, 333, 413, 918
Hpy99I CGWCG 3 cut(s) 52, 179, 182
HpyAV CCTTC 5 cut(s) 55, 118, 119, 652, 752
HpyCH4III ACNGT 3 cut(s) 265, 339, 355
HpyCH4IV ACGT 3 cut(s) 89, 177, 933
HpyCH4V TGCA 9 cut(s) 6, 318, 461, 543, 675, 764, 926, 980, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 540, 672, 920, 1037
HpyF3I CTNAG 2 cut(s) 390, 535
HpySE526I ACGT 3 cut(s) 89, 177, 933
Hsp92I GRCGYC 2 cut(s) 177, 601
Hsp92II CATG 5 cut(s) 124, 461, 808, 839, 1007
HspAI GCGC 4 cut(s) 601, 878, 1023, 1038
KasI GGCGCC 1 cut(s) 600
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 973, 996, 1073
LmnI GCTCC 3 cut(s) 289, 655, 920
Lsp1109I GCAGC 2 cut(s) 910, 1027
LweI GCATC 2 cut(s) 452, 472
MaeI CTAG 3 cut(s) 605, 753, 842
MaeII ACGT 3 cut(s) 89, 177, 933
MaeIII GTNAC 2 cut(s) 569, 736
MalI GATC 3 cut(s) 975, 998, 1075
MboI GATC 3 cut(s) 973, 996, 1073
MflI RGATCY 1 cut(s) 996
MhlI GDGCHC 2 cut(s) 294, 987
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 6 cut(s) 310, 401, 432, 453, 586, 968
MluNI TGGCCA 1 cut(s) 166
Mly113I GGCGCC 1 cut(s) 601
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 9, 920
Mox20I TGGCCA 1 cut(s) 166
MroI TCCGGA 1 cut(s) 412
MscI TGGCCA 1 cut(s) 166
MseI TTAA 3 cut(s) 75, 375, 515
Msp20I TGGCCA 1 cut(s) 166
MspCI CTTAAG 1 cut(s) 514
MspI CCGG 6 cut(s) 413, 615, 775, 816, 827, 1069
MspR9I CCNGG 6 cut(s) 104, 199, 616, 817, 963, 1070
Mva1269I GAATGC 1 cut(s) 926
MvaI CCWGG 3 cut(s) 104, 199, 963
MwoI GCNNNNNNNGC 4 cut(s) 540, 672, 920, 1037
NarI GGCGCC 1 cut(s) 601
NciI CCSGG 3 cut(s) 616, 817, 1070
NcoI CCATGG 1 cut(s) 804
NdeII GATC 3 cut(s) 973, 996, 1073
NlaIII CATG 5 cut(s) 124, 461, 808, 839, 1007
NlaIV GGNNCC 1 cut(s) 602
NmeAIII GCCGAG 1 cut(s) 999
NmuCI GTSAC 1 cut(s) 569
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 926
PfeI GAWTC 3 cut(s) 416, 723, 823
PflFI GACNNNGTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 1085
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 2 cut(s) 925, 1042
PleI GAGTC 1 cut(s) 34
PluTI GGCGCC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 3 cut(s) 102, 197, 961
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 3 cut(s) 102, 197, 961
PspN4I GGNNCC 1 cut(s) 602
PspPI GGNCC 3 cut(s) 106, 335, 370
PspPPI RGGWCCY 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 1 cut(s) 996
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 2 cut(s) 119, 399
RsaNI GTAC 2 cut(s) 118, 398
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 75, 375, 515
SatI GCNGC 2 cut(s) 924, 1041
Sau3AI GATC 3 cut(s) 973, 996, 1073
Sau96I GGNCC 3 cut(s) 106, 335, 370
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 6 cut(s) 104, 199, 616, 817, 963, 1070
SduI GDGCHC 2 cut(s) 294, 987
SfaNI GCATC 2 cut(s) 452, 472
SfoI GGCGCC 1 cut(s) 602
SinI GGWCC 3 cut(s) 106, 335, 370
SmlI CTYRAG 2 cut(s) 274, 514
SmoI CTYRAG 2 cut(s) 274, 514
Sse9I AATT 6 cut(s) 310, 401, 432, 453, 586, 968
SsiI CCGC 1 cut(s) 113
SspDI GGCGCC 1 cut(s) 600
SspMI CTAG 3 cut(s) 605, 753, 842
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 6 cut(s) 102, 197, 614, 815, 961, 1068
StyI CCWWGG 2 cut(s) 500, 804
TaaI ACNGT 3 cut(s) 265, 339, 355
TaiI ACGT 3 cut(s) 92, 180, 936
TasI AATT 6 cut(s) 310, 401, 432, 453, 586, 968
TatI WGTACW 2 cut(s) 117, 397
TfiI GAWTC 3 cut(s) 416, 723, 823
Tru1I TTAA 3 cut(s) 75, 375, 515
Tru9I TTAA 3 cut(s) 75, 375, 515
TscAI CASTG 3 cut(s) 444, 857, 1053
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 923, 1040
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 6 cut(s) 110, 127, 137, 374, 446, 824
TspGWI ACGGA 2 cut(s) 302, 383
TspRI CASTG 3 cut(s) 444, 857, 1053
Tth111I GACNNNGTC 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 1085
Vha464I CTTAAG 1 cut(s) 514
VpaK11BI GGWCC 3 cut(s) 106, 335, 370
XapI RAATTY 2 cut(s) 432, 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XspI CTAG 3 cut(s) 605, 753, 842
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.