Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Forward (+)

20485102 .. 20487920

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG125800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTGCAATCACGGTGCGAGGGCGGCGAAGAGTAGCAGCAGCAACAGCAGTAGTAGTCAGCAGCAGCAGCAGGAGAAGAAGAAGAAGAAGAAGACGAGGATGCTGGTTAAGTTTAAAGACCTGCCACAGTATATGAAGGACAACGAGTACATACTGGACTATTACCGCTGCGAGTGGCCGTTAAAGGATGTCATCTTCAGCGTCTTTGCCTTGCACAACGAAACCCTCAACATCTGGACGCATTTGTTGGGGTTCCTTATATTCGTGGGACTAGCGGTGATGAGCTCGAAGGATATGGGAGCTCTGCTGGGGAATTTCTCCAGGGCTTCGGTTTCTGGGCCGTCGATGATGAAGATGAACCAGCTTAATGTCTCCGACGCTCTATTTGCTCCGGATTCACATTTGAAGCAAATGTCAGAGTCATCCATTTATGCTAACAAGGATGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAGACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCAATCCATACTCCCGCTTTTTCTATCTCTCTTCAATATCCATTCTTGGCGTCCTTGTCATCGTTACACTCCTTTCGCCGAGTCTCTCTGCACCCCGTTTCCGGACATTCAGGGCCACTCTCTTCCTCACCATGGGCTTCTCAGGTGTTATTCCTGCTGTTCATGCCCTTGTTATCCATTGGAACCATCAACCCGTAATTGCTGCTCTGGGGTATGAACTTGCTATGGCTATTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCAGAACGCTGGAAACCCGGTAAATTTGATATTGCGGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACATAGTGCTGCCACACTGGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

355

Amino Acids

40.01

Weight (kDa)

9.39

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	69 - 336	5.4e-63	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AccIII	TCCGGA	2 cut(s)	391, 747
AciI	CCGC	6 cut(s)	23, 166, 275, 587, 661, 953
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	313, 941
AcuI	CTGAAG	1 cut(s)	181
AcyI	GRCGYC	2 cut(s)	574, 696
AdeI	CACNNNGTG	1 cut(s)	1010
AfaI	GTAC	2 cut(s)	149, 457
AfiI	CCNNNNNNNGG	2 cut(s)	747, 778
AflII	CTTAAG	1 cut(s)	487
AgsI	TTSAA	3 cut(s)	406, 559, 681
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	6 cut(s)	285, 302, 364, 468, 519, 896
AluI	AGCT	6 cut(s)	285, 302, 364, 468, 519, 896
Alw21I	GWGCWC	3 cut(s)	287, 304, 1000
Alw26I	GTCTC	2 cut(s)	376, 734
Alw44I	GTGCAC	1 cut(s)	996
Aor13HI	TCCGGA	2 cut(s)	391, 747
AoxI	GGCC	4 cut(s)	176, 338, 470, 759
ApaLI	GTGCAC	1 cut(s)	996
ApoI	RAATTY	2 cut(s)	313, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspS9I	GGNCC	2 cut(s)	338, 759
AsuC2I	CCSGG	2 cut(s)	936, 1043
AsuHPI	GGTGA	2 cut(s)	289, 766
BaeGI	GKGCMC	1 cut(s)	1000
BanII	GRGCYC	2 cut(s)	287, 304
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	3 cut(s)	287, 304, 1000
BccI	CCATC	3 cut(s)	440, 840, 972
BceAI	ACGGC	2 cut(s)	163, 325
BciT130I	CCWGG	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	909
BcnI	CCSGG	2 cut(s)	936, 1043
BcoDI	GTCTC	2 cut(s)	376, 734
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	514
BfrI	CTTAAG	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	909
BglI	GCCNNNNNGGC	1 cut(s)	1022
BglII	AGATCT	1 cut(s)	969
Bme1390I	CCNGG	3 cut(s)	322, 936, 1043
BmgT120I	GGNCC	2 cut(s)	338, 759
BmiI	GGNNCC	2 cut(s)	254, 830
BmrFI	CCNGG	3 cut(s)	322, 936, 1043
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	304, 532
BpuMI	CCSGG	2 cut(s)	936, 1043
BsaHI	GRCGYC	2 cut(s)	574, 696
BsaJI	CCNNGG	5 cut(s)	321, 473, 777, 888, 1042
BsaWI	WCCGGW	2 cut(s)	391, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	747, 778
Bse1I	ACTGG	2 cut(s)	159, 1026
BseAI	TCCGGA	2 cut(s)	391, 747
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	5 cut(s)	321, 473, 777, 888, 1042
BseGI	GGATG	4 cut(s)	105, 193, 422, 448
BseLI	CCNNNNNNNGG	2 cut(s)	747, 778
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	2 cut(s)	159, 1026
BseSI	GKGCMC	1 cut(s)	1000
BseYI	CCCAGC	2 cut(s)	307, 896
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	4 cut(s)	178, 340, 472, 761
BsiHKAI	GWGCWC	3 cut(s)	287, 304, 1000
BsiSI	CCGG	4 cut(s)	392, 748, 936, 1042
BslFI	GGGAC	2 cut(s)	282, 969
BslI	CCNNNNNNNGG	2 cut(s)	747, 778
BsmAI	GTCTC	2 cut(s)	376, 734
BsmFI	GGGAC	2 cut(s)	282, 969
BsnI	GGCC	4 cut(s)	178, 340, 472, 761
Bsp1286I	GDGCHC	3 cut(s)	287, 304, 1000
Bsp13I	TCCGGA	2 cut(s)	391, 747
Bsp143I	GATC	1 cut(s)	969
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	6 cut(s)	23, 166, 275, 587, 661, 953
BspANI	GGCC	4 cut(s)	178, 340, 472, 761
BspCNI	CTCAG	1 cut(s)	800
BspEI	TCCGGA	2 cut(s)	391, 747
BspLI	GGNNCC	2 cut(s)	254, 830
BspMAI	CTGCAG	1 cut(s)	518
BspMI	ACCTGC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	159, 1026
BssECI	CCNNGG	5 cut(s)	321, 473, 777, 888, 1042
BssMI	GATC	1 cut(s)	969
BssNI	GRCGYC	2 cut(s)	574, 696
BssT1I	CCWWGG	2 cut(s)	473, 777
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	14, 129
Bst6I	CTCTTC	3 cut(s)	23, 682, 773
BstACI	GRCGYC	2 cut(s)	574, 696
BstAFI	CTTAAG	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstC8I	GCNNGC	2 cut(s)	470, 589
BstDEI	CTNAG	2 cut(s)	508, 787
BstDSI	CCRYGG	2 cut(s)	777, 888
BstF5I	GGATG	4 cut(s)	105, 193, 422, 448
BstKTI	GATC	1 cut(s)	972
BstMAI	GTCTC	2 cut(s)	376, 734
BstMBI	GATC	1 cut(s)	969
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 45, 67, 386, 513, 809, 893, 1010, 1022
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	320, 934, 1041
BstSFI	CTRYAG	1 cut(s)	514
BstSLI	GKGCMC	1 cut(s)	1000
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	969
BstXI	CCANNNNNNTGG	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	969
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	4 cut(s)	178, 340, 472, 761
BtgI	CCRYGG	2 cut(s)	777, 888
BtsCI	GGATG	4 cut(s)	105, 193, 422, 448
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	2 cut(s)	643, 1019
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	470, 589
Cfr13I	GGNCC	2 cut(s)	338, 759
CseI	GACGC	6 cut(s)	190, 247, 386, 561, 563, 685
Csp6I	GTAC	2 cut(s)	148, 456
CviAII	CATG	4 cut(s)	778, 809, 977, 1030
CviQI	GTAC	2 cut(s)	148, 456
DdeI	CTNAG	2 cut(s)	508, 787
DpnI	GATC	1 cut(s)	971
DpnII	GATC	1 cut(s)	969
DraI	TTTAAA	1 cut(s)	115
DraIII	CACNNNGTG	1 cut(s)	1010
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	3 cut(s)	23, 682, 773
EarI	CTCTTC	3 cut(s)	23, 682, 773
Ecl136II	GAGCTC	2 cut(s)	285, 302
Eco130I	CCWWGG	2 cut(s)	473, 777
Eco24I	GRGCYC	2 cut(s)	287, 304
Eco53kI	GAGCTC	2 cut(s)	285, 302
Eco57I	CTGAAG	1 cut(s)	181
EcoICRI	GAGCTC	2 cut(s)	285, 302
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	473, 777
EcoT38I	GRGCYC	2 cut(s)	287, 304
ErhI	CCWWGG	2 cut(s)	473, 777
FaeI	CATG	4 cut(s)	781, 812, 980, 1033
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FaqI	GGGAC	2 cut(s)	282, 969
FatI	CATG	4 cut(s)	777, 808, 976, 1029
FauI	CCCGC	3 cut(s)	580, 668, 946
FokI	GGATG	4 cut(s)	112, 200, 409, 455
FriOI	GRGCYC	2 cut(s)	287, 304
FspBI	CTAG	1 cut(s)	272
GsaI	CCCAGC	2 cut(s)	311, 900
GsuI	CTGGAG	2 cut(s)	304, 532
HaeIII	GGCC	4 cut(s)	178, 340, 472, 761
HapII	CCGG	4 cut(s)	392, 748, 936, 1042
HgaI	GACGC	6 cut(s)	190, 247, 386, 561, 563, 685
Hin1I	GRCGYC	2 cut(s)	574, 696
Hin1II	CATG	4 cut(s)	781, 812, 980, 1033
HinfI	GANTC	3 cut(s)	395, 419, 727
HpaII	CCGG	4 cut(s)	392, 748, 936, 1042
HphI	GGTGA	2 cut(s)	289, 766
Hpy166II	GTNNAC	1 cut(s)	998
Hpy188I	TCNGA	3 cut(s)	376, 418, 969
Hpy188III	TCNNGA	5 cut(s)	235, 392, 549, 578, 748
Hpy8I	GTNNAC	1 cut(s)	998
Hpy99I	CGWCG	2 cut(s)	346, 380
HpyAV	CCTTC	4 cut(s)	130, 283, 625, 649
HpyCH4III	ACNGT	2 cut(s)	14, 129
HpyCH4V	TGCA	7 cut(s)	6, 214, 516, 648, 737, 998, 1004
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 45, 67, 386, 513, 809, 893, 1010, 1022
HpyF3I	CTNAG	2 cut(s)	508, 787
Hsp92I	GRCGYC	2 cut(s)	574, 696
Hsp92II	CATG	4 cut(s)	781, 812, 980, 1033
Kpn2I	TCCGGA	2 cut(s)	391, 747
Kzo9I	GATC	1 cut(s)	969
LmnI	GCTCC	6 cut(s)	299, 394, 524, 617, 628, 893
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	542, 709
MalI	GATC	1 cut(s)	971
MboI	GATC	1 cut(s)	969
MflI	RGATCY	1 cut(s)	969
MhlI	GDGCHC	3 cut(s)	287, 304, 1000
MluCI	AATT	4 cut(s)	313, 459, 843, 941
MlyI	GAGTC	2 cut(s)	428, 736
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	6 cut(s)	12, 90, 236, 533, 542, 782
MroI	TCCGGA	2 cut(s)	391, 747
MseI	TTAA	5 cut(s)	108, 114, 182, 366, 488
MspA1I	CMGCKG	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	4 cut(s)	392, 748, 936, 1042
MspR9I	CCNGG	3 cut(s)	322, 936, 1043
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	9 cut(s)	23, 45, 67, 386, 513, 809, 893, 1010, 1022
NciI	CCSGG	2 cut(s)	936, 1043
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	1 cut(s)	969
NlaIII	CATG	4 cut(s)	781, 812, 980, 1033
NlaIV	GGNNCC	2 cut(s)	254, 830
NmeAIII	GCCGAG	1 cut(s)	750
NmuCI	GTSAC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	395
PleI	GAGTC	2 cut(s)	427, 735
PpsI	GAGTC	2 cut(s)	427, 735
Psp124BI	GAGCTC	2 cut(s)	287, 304
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	2 cut(s)	307, 896
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	254, 830
PspPI	GGNCC	2 cut(s)	338, 759
PstI	CTGCAG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	969
RsaI	GTAC	2 cut(s)	149, 457
RsaNI	GTAC	2 cut(s)	148, 456
SacI	GAGCTC	2 cut(s)	287, 304
SaqAI	TTAA	5 cut(s)	108, 114, 182, 366, 488
Sau3AI	GATC	1 cut(s)	969
Sau96I	GGNCC	2 cut(s)	338, 759
SchI	GAGTC	2 cut(s)	428, 736
ScrFI	CCNGG	3 cut(s)	322, 936, 1043
SduI	GDGCHC	3 cut(s)	287, 304, 1000
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	4 cut(s)	313, 459, 843, 941
SsiI	CCGC	6 cut(s)	23, 166, 275, 587, 661, 953
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	2 cut(s)	287, 304
StyD4I	CCNGG	3 cut(s)	320, 934, 1041
StyI	CCWWGG	2 cut(s)	473, 777
TaaI	ACNGT	2 cut(s)	14, 129
TaqI	TCGA	2 cut(s)	287, 344
TasI	AATT	4 cut(s)	313, 459, 843, 941
TatI	WGTACW	2 cut(s)	147, 455
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	5 cut(s)	108, 114, 182, 366, 488
Tru9I	TTAA	5 cut(s)	108, 114, 182, 366, 488
TscAI	CASTG	2 cut(s)	650, 1026
TseFI	GTSAC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	149, 365, 371, 797, 876
TspRI	CASTG	2 cut(s)	650, 1026
Vha464I	CTTAAG	1 cut(s)	487
VneI	GTGCAC	1 cut(s)	996
XapI	RAATTY	2 cut(s)	313, 941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.