pycom08g21610

Haemolysin-III related

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
21055211 .. 21058467
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g21610.5

Sequence Viewer

Length: 1275 bp
ATGTGTGGCTACGTACAGCCTAGAGCAAGTGGCACGCAAGAAAGCAGCCCACCCACTTACTTCCCTTTAAATGTAAATCAAAGAGGAGAAAGAGAGAGAGGGACCAGACCAGAAATTCGAAGAAGAAAAGGAAACAAAGAAAACAAGAGAGTGGAGAAAGAGAGAGAGAGAAAAAGAGAGATCATGTGCAATCACAGGAAGCGAATGGAATGGTGGGGTACTGGTACCAGTAATACTAGTAGCAGGAAGAAGAAGAAGACCAAGACGATGGCGTTGAGGAAGTTCGAGGAGCTTCCGCCCTACATGAAGGACAACGAGTACATATTGGATTATTACAGATGCGAGTGGCCCCTGAAGGATCTCTTGTTCAGCGTCTTTGCCTGCCACAACGAAACCCTCAACATCTGGACCCACTTGGTGGGGTTTTTGATATTTCTGGGACTGACGGTCATGACCTTGACCAACAACTCACTATTGGAGCTGCACATTTTCTCCAGGGCTGTGGCGGTTCCTGGACCGTCGATCAATGTCTCCTCCTCCTCTTCCTCCTCTCACAATGTGGATGCATTTCTTCCTCGTTCGCCGGATTTAGAGGGACATGCATCATCAATCATTCATGCGAAAGCGAATGCAAACCAAGAAGTTGGTTACGATGGTATTAATCCGCTTACAATGTGGCCGTGGTTTGTGTTCCTAGGTGGAGCTATGGGATGTTTGGTCTGCAGTTCCCTTTCCCACCTCCTTGCTTGTCACTCTAAACGCTTCAATTTTTTTTTCTGGCGCCTAGACTACGTCGGCATCTCTCTTATGATCGTCTCTTCTTTTTTTGCTCCCATTTACTATGTCTTCTCCTGCAACCCTTGCTCTTGCTTTTTCTACCTTTCTTCCATATCTCTGCTCGGGATCCTCGTCATTGTTACCCTTCTTTCGCCTAGTCTCTCTAGACCCCGTTTCCGCCCATTTAGGGCTACCCTTTTCCTCTCCATGGGCTTCTCCGGAGTCATTCCTGCGCTTCATGCCCTAGTTATCCATTGGGGCAATCAACATATAATTGTTGCTTTGGCTTATGAACTTGTTATGGCCATCTTATATGCTTCGGGAGCAGCATTCTATGTCGCTAGAATACCAGAACGGTGGAAGCCCGGTAAGTTTGATATTGTAGGGCACAGTCATCAGATCTTCCACATCTTTGTTGTGCTAGGCGCACTTACACATAGCGCTGCTACTCTGGTTTTAATGGACTTTCGCCGAGGATCACCAACCTGTTCATATTAG

Protein Analysis

425

Amino Acids

48.18

Weight (kDa)

9.53

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 224, 780
AccB7I CCANNNNNTGG 1 cut(s) 418
AccIII TCCGGA 1 cut(s) 995
AciI CCGC 4 cut(s) 296, 506, 665, 955
AclWI GGATC 4 cut(s) 366, 898, 911, 1261
AcoI YGGCCR 2 cut(s) 677, 1080
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 781
AdeI CACNNNGTG 2 cut(s) 418, 559
AfaI GTAC 4 cut(s) 15, 220, 226, 320
AfeI AGCGCT 1 cut(s) 1219
AfiI CCNNNNNNNGG 3 cut(s) 418, 964, 985
AgsI TTSAA 1 cut(s) 766
AhdI GACNNNNNGTC 1 cut(s) 446
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 2 cut(s) 494, 511
AloI GAACNNNNNNTCC 2 cut(s) 350, 382
AluBI AGCT 3 cut(s) 292, 481, 704
AluI AGCT 3 cut(s) 292, 481, 704
Alw26I GTCTC 3 cut(s) 535, 820, 941
AlwI GGATC 4 cut(s) 366, 898, 911, 1261
Ama87I CYCGRG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 995
Aor51HI AGCGCT 1 cut(s) 1219
AoxI GGCC 3 cut(s) 347, 677, 1080
ApeKI GCWGC 4 cut(s) 45, 481, 1103, 1220
ApoI RAATTY 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AseI ATTAAT 1 cut(s) 660
Asp718I GGTACC 1 cut(s) 224
AspA2I CCTAGG 1 cut(s) 694
AspLEI GCGC 4 cut(s) 783, 1012, 1205, 1220
AspS9I GGNCC 4 cut(s) 102, 348, 408, 515
AsuC2I CCSGG 1 cut(s) 1143
AsuHPI GGTGA 1 cut(s) 1248
AsuII TTCGAA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 3 cut(s) 102, 408, 515
AvrII CCTAGG 1 cut(s) 694
BaeGI GKGCMC 1 cut(s) 1167
BalI TGGCCA 1 cut(s) 1082
BamHI GGATCC 1 cut(s) 903
BanI GGYRCC 2 cut(s) 224, 780
BbsI GAAGAC 2 cut(s) 263, 838
BbvI GCAGC 4 cut(s) 57, 468, 1115, 1207
BccI CCATC 3 cut(s) 262, 647, 1091
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 2 cut(s) 496, 513
BcnI CCSGG 1 cut(s) 1143
BcoDI GTCTC 3 cut(s) 535, 820, 941
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 9 cut(s) 21, 237, 695, 785, 933, 942, 1022, 1119, 1199
BfmI CTRYAG 1 cut(s) 721
BfoI RGCGCY 2 cut(s) 784, 1221
BglII AGATCT 1 cut(s) 1176
BisI GCNGC 4 cut(s) 46, 482, 1104, 1221
BlnI CCTAGG 1 cut(s) 694
BlsI GCNGC 4 cut(s) 47, 483, 1105, 1222
Bme1390I CCNGG 3 cut(s) 496, 513, 1143
Bme18I GGWCC 3 cut(s) 102, 408, 515
BmeRI GACNNNNNGTC 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 4 cut(s) 102, 348, 408, 515
BmiI GGNNCC 7 cut(s) 103, 226, 350, 410, 510, 782, 905
BmrFI CCNGG 3 cut(s) 496, 513, 1143
BmsI GCATC 4 cut(s) 329, 553, 611, 807
BpiI GAAGAC 2 cut(s) 263, 838
BpmI CTGGAG 1 cut(s) 478
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 1143
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 781
BsaJI CCNNGG 5 cut(s) 495, 680, 694, 984, 1249
BsaWI WCCGGW 1 cut(s) 995
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 964, 985
Bse1I ACTGG 2 cut(s) 226, 228
BseAI TCCGGA 1 cut(s) 995
BseBI CCWGG 2 cut(s) 496, 513
BseDI CCNNGG 5 cut(s) 495, 680, 694, 984, 1249
BseGI GGATG 2 cut(s) 568, 716
BseLI CCNNNNNNNGG 3 cut(s) 418, 964, 985
BseNI ACTGG 2 cut(s) 226, 228
BseRI GAGGAG 6 cut(s) 99, 302, 523, 526, 529, 538
BseSI GKGCMC 1 cut(s) 1167
BseXI GCAGC 4 cut(s) 57, 468, 1115, 1207
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 3 cut(s) 349, 679, 1082
BshNI GGYRCC 2 cut(s) 224, 780
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 3 cut(s) 584, 996, 1143
BslFI GGGAC 3 cut(s) 115, 453, 609
BslI CCNNNNNNNGG 3 cut(s) 418, 964, 985
BsmAI GTCTC 3 cut(s) 535, 820, 941
BsmBI CGTCTC 1 cut(s) 820
BsmFI GGGAC 3 cut(s) 115, 453, 609
BsmI GAATGC 2 cut(s) 634, 1106
BsnI GGCC 3 cut(s) 349, 679, 1082
BsoBI CYCGRG 1 cut(s) 899
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 1167
Bsp13I TCCGGA 1 cut(s) 995
Bsp143I GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
Bsp19I CCATGG 1 cut(s) 984
BspACI CCGC 4 cut(s) 296, 506, 665, 955
BspANI GGCC 3 cut(s) 349, 679, 1082
BspEI TCCGGA 1 cut(s) 995
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 7 cut(s) 103, 226, 350, 410, 510, 782, 905
BspMAI CTGCAG 1 cut(s) 725
BspPI GGATC 4 cut(s) 366, 898, 911, 1261
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 2 cut(s) 224, 780
BsrI ACTGG 2 cut(s) 226, 228
BssECI CCNNGG 5 cut(s) 495, 680, 694, 984, 1249
BssMI GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
BssNI GRCGYC 1 cut(s) 781
BssT1I CCWWGG 2 cut(s) 694, 984
Bst2UI CCWGG 2 cut(s) 496, 513
Bst4CI ACNGT 4 cut(s) 448, 519, 1134, 1169
Bst6I CTCTTC 2 cut(s) 547, 823
BstACI GRCGYC 1 cut(s) 781
BstAPI GCANNNNNTGC 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 35, 382
BstDSI CCRYGG 2 cut(s) 680, 984
BstF5I GGATG 2 cut(s) 568, 716
BstH2I RGCGCY 2 cut(s) 784, 1221
BstHHI GCGC 4 cut(s) 783, 1012, 1205, 1220
BstKTI GATC 7 cut(s) 183, 361, 525, 813, 906, 1179, 1256
BstMAI GTCTC 3 cut(s) 535, 820, 941
BstMBI GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
BstMWI GCNNNNNNNGC 3 cut(s) 861, 1016, 1100
BstNI CCWGG 2 cut(s) 496, 513
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 494, 511, 1141
BstSFI CTRYAG 1 cut(s) 721
BstSLI GKGCMC 1 cut(s) 1167
BstSNI TACGTA 1 cut(s) 13
BstV1I GCAGC 4 cut(s) 57, 468, 1115, 1207
BstV2I GAAGAC 2 cut(s) 263, 838
BstX2I RGATCY 3 cut(s) 358, 903, 1176
BstXI CCANNNNNNTGG 4 cut(s) 268, 502, 644, 1134
BstYI RGATCY 3 cut(s) 358, 903, 1176
BsuRI GGCC 3 cut(s) 349, 679, 1082
BtgI CCRYGG 2 cut(s) 680, 984
BtsCI GGATG 2 cut(s) 568, 716
Cac8I GCNNGC 2 cut(s) 35, 382
CciI TCATGA 1 cut(s) 450
CfoI GCGC 4 cut(s) 783, 1012, 1205, 1220
Cfr13I GGNCC 4 cut(s) 102, 348, 408, 515
CseI GACGC 1 cut(s) 361
Csp6I GTAC 4 cut(s) 14, 219, 225, 319
CviAII CATG 7 cut(s) 184, 304, 451, 599, 617, 985, 1016
CviQI GTAC 4 cut(s) 14, 219, 225, 319
DinI GGCGCC 1 cut(s) 782
DpnI GATC 7 cut(s) 182, 360, 524, 812, 905, 1178, 1255
DpnII GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
DraI TTTAAA 1 cut(s) 69
DraIII CACNNNGTG 2 cut(s) 418, 559
DriI GACNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 2 cut(s) 677, 1080
Eam1104I CTCTTC 2 cut(s) 547, 823
Eam1105I GACNNNNNGTC 1 cut(s) 446
EarI CTCTTC 2 cut(s) 547, 823
EciI GGCGGA 2 cut(s) 285, 944
Eco105I TACGTA 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 694, 984
Eco47I GGWCC 3 cut(s) 102, 408, 515
Eco47III AGCGCT 1 cut(s) 1219
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 899
EcoRII CCWGG 2 cut(s) 494, 511
EcoT14I CCWWGG 2 cut(s) 694, 984
EcoT22I ATGCAT 2 cut(s) 568, 604
EgeI GGCGCC 1 cut(s) 782
EheI GGCGCC 1 cut(s) 782
ErhI CCWWGG 2 cut(s) 694, 984
Esp3I CGTCTC 1 cut(s) 820
FaeI CATG 7 cut(s) 187, 307, 454, 602, 620, 988, 1019
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 115, 453, 609
FatI CATG 7 cut(s) 183, 303, 450, 598, 616, 984, 1015
Fnu4HI GCNGC 4 cut(s) 46, 482, 1104, 1221
FokI GGATG 2 cut(s) 575, 723
Fsp4HI GCNGC 4 cut(s) 46, 482, 1104, 1221
FspBI CTAG 9 cut(s) 21, 237, 695, 785, 933, 942, 1022, 1119, 1199
GlaI GCGC 4 cut(s) 782, 1011, 1204, 1219
GluI GCNGC 4 cut(s) 46, 482, 1104, 1221
GsuI CTGGAG 1 cut(s) 478
HaeII RGCGCY 2 cut(s) 784, 1221
HaeIII GGCC 3 cut(s) 349, 679, 1082
HapII CCGG 3 cut(s) 584, 996, 1143
HgaI GACGC 1 cut(s) 361
HhaI GCGC 4 cut(s) 783, 1012, 1205, 1220
Hin1I GRCGYC 1 cut(s) 781
Hin1II CATG 7 cut(s) 187, 307, 454, 602, 620, 988, 1019
Hin6I GCGC 4 cut(s) 781, 1010, 1203, 1218
HinP1I GCGC 4 cut(s) 781, 1010, 1203, 1218
HinfI GANTC 1 cut(s) 999
HpaII CCGG 3 cut(s) 584, 996, 1143
HphI GGTGA 1 cut(s) 1248
Hpy188I TCNGA 1 cut(s) 1176
Hpy188III TCNNGA 6 cut(s) 406, 451, 901, 942, 996, 1098
Hpy99I CGWCG 2 cut(s) 523, 797
HpyAV CCTTC 3 cut(s) 301, 349, 932
HpyCH4III ACNGT 4 cut(s) 448, 519, 1134, 1169
HpyCH4IV ACGT 2 cut(s) 12, 792
HpyCH4V TGCA 7 cut(s) 189, 484, 566, 602, 632, 723, 855
HpyF10VI GCNNNNNNNGC 3 cut(s) 861, 1016, 1100
HpySE526I ACGT 2 cut(s) 12, 792
Hsp92I GRCGYC 1 cut(s) 781
Hsp92II CATG 7 cut(s) 187, 307, 454, 602, 620, 988, 1019
HspAI GCGC 4 cut(s) 781, 1010, 1203, 1218
KasI GGCGCC 1 cut(s) 780
Kpn2I TCCGGA 1 cut(s) 995
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
LmnI GCTCC 5 cut(s) 289, 478, 701, 835, 1100
Lsp1109I GCAGC 4 cut(s) 57, 468, 1115, 1207
LweI GCATC 4 cut(s) 329, 553, 611, 807
MaeI CTAG 9 cut(s) 21, 237, 695, 785, 933, 942, 1022, 1119, 1199
MaeII ACGT 2 cut(s) 12, 792
MaeIII GTNAC 3 cut(s) 647, 749, 916
MalI GATC 7 cut(s) 182, 360, 524, 812, 905, 1178, 1255
MboI GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
MflI RGATCY 3 cut(s) 358, 903, 1176
MhlI GDGCHC 1 cut(s) 1167
MlsI TGGCCA 1 cut(s) 1082
MluCI AATT 3 cut(s) 114, 766, 1050
MluNI TGGCCA 1 cut(s) 1082
Mly113I GGCGCC 1 cut(s) 781
MlyI GAGTC 1 cut(s) 1008
Mox20I TGGCCA 1 cut(s) 1082
Mph1103I ATGCAT 2 cut(s) 568, 604
MroI TCCGGA 1 cut(s) 995
MscI TGGCCA 1 cut(s) 1082
MseI TTAA 3 cut(s) 68, 660, 1235
Msp20I TGGCCA 1 cut(s) 1082
MspI CCGG 3 cut(s) 584, 996, 1143
MspR9I CCNGG 3 cut(s) 496, 513, 1143
Mva1269I GAATGC 2 cut(s) 634, 1106
MvaI CCWGG 2 cut(s) 496, 513
MwoI GCNNNNNNNGC 3 cut(s) 861, 1016, 1100
NarI GGCGCC 1 cut(s) 781
NciI CCSGG 1 cut(s) 1143
NcoI CCATGG 1 cut(s) 984
NdeII GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
NlaIII CATG 7 cut(s) 187, 307, 454, 602, 620, 988, 1019
NlaIV GGNNCC 7 cut(s) 103, 226, 350, 410, 510, 782, 905
NmeAIII GCCGAG 1 cut(s) 1274
NmuCI GTSAC 1 cut(s) 749
NsiI ATGCAT 2 cut(s) 568, 604
NspI RCATGY 1 cut(s) 602
NspV TTCGAA 1 cut(s) 118
PagI TCATGA 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 906
PctI GAATGC 2 cut(s) 634, 1106
PflFI GACNNNGTC 1 cut(s) 791
PflMI CCANNNNNTGG 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 4 cut(s) 47, 483, 1105, 1222
PleI GAGTC 1 cut(s) 1007
PluTI GGCGCC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 1007
Ppu21I YACGTR 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 494, 511
PspGI CCWGG 2 cut(s) 494, 511
PspN4I GGNNCC 7 cut(s) 103, 226, 350, 410, 510, 782, 905
PspPI GGNCC 4 cut(s) 102, 348, 408, 515
PstI CTGCAG 1 cut(s) 725
PsuI RGATCY 3 cut(s) 358, 903, 1176
PsyI GACNNNGTC 1 cut(s) 791
RsaI GTAC 4 cut(s) 15, 220, 226, 320
RsaNI GTAC 4 cut(s) 14, 219, 225, 319
SaqAI TTAA 3 cut(s) 68, 660, 1235
SatI GCNGC 4 cut(s) 46, 482, 1104, 1221
Sau3AI GATC 7 cut(s) 180, 358, 522, 810, 903, 1176, 1253
Sau96I GGNCC 4 cut(s) 102, 348, 408, 515
SchI GAGTC 1 cut(s) 1008
ScrFI CCNGG 3 cut(s) 496, 513, 1143
SduI GDGCHC 1 cut(s) 1167
SfaNI GCATC 4 cut(s) 329, 553, 611, 807
SfcI CTRYAG 1 cut(s) 721
SfoI GGCGCC 1 cut(s) 782
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 3 cut(s) 102, 408, 515
SnaBI TACGTA 1 cut(s) 13
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 3 cut(s) 114, 766, 1050
SsiI CCGC 4 cut(s) 296, 506, 665, 955
SspDI GGCGCC 1 cut(s) 780
SspMI CTAG 9 cut(s) 21, 237, 695, 785, 933, 942, 1022, 1119, 1199
StyD4I CCNGG 3 cut(s) 494, 511, 1141
StyI CCWWGG 2 cut(s) 694, 984
TaaI ACNGT 4 cut(s) 448, 519, 1134, 1169
TaiI ACGT 2 cut(s) 15, 795
TaqI TCGA 3 cut(s) 118, 285, 521
TasI AATT 3 cut(s) 114, 766, 1050
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 3 cut(s) 68, 660, 1235
Tru9I TTAA 3 cut(s) 68, 660, 1235
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 4 cut(s) 45, 481, 1103, 1220
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 5 cut(s) 320, 605, 1004, 1083, 1257
Tth111I GACNNNGTC 1 cut(s) 791
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 3 cut(s) 102, 408, 515
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 941
XceI RCATGY 1 cut(s) 602
XmaJI CCTAGG 1 cut(s) 694
XspI CTAG 9 cut(s) 21, 237, 695, 785, 933, 942, 1022, 1119, 1199
Zsp2I ATGCAT 2 cut(s) 568, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.