Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Forward (+)

27628003 .. 27630957

Gene Structure 2955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTGCAATCACGGGCCGAGGTCGGCGAAGAGTAGCAGCAGTAGTAGGCAGCAGCAGCAGGAGGAGAAGAAGAAGAAGAAGAAGACGAGGATGCTGGTTAAGTTTAAAGACCTGCCACAGTATATGAAGGACAACGAGTACATACTGGACTATTACCGCTGCGAGTGGCCATTAAAGGATGTCATCTTCAGCGTCTTTGCCTGGCACAACGAAACCCTCAACATCTGGACGCATTTGTTGGGGTTCTTGATATTCGTGGGACTAGCGGTGATGAGTTCGAAGGATATGGGAGCTCTGCTGGGGAATTTCTCTAGGGCTTCGGTTTCTGGGCCGTCGATGATGAAGATGAACCAGCTTAATGTCTCCGACGCTCTATTTGCTCCGGATTCACATTTGAAGCAAATGTCAGAGTCATTCATTTATGCTAACAAGGAAGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAGACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCAATCCATACTCCCGCTTTTTCTATCTCTCTTCAATATCCATTCTTGGCGTCCTTGTCATCGTTACACTCCTTTCGCCGAGTCTCTCTGCACCCCGTTTCCGGACATTCAGGGCCACTCTCTTCCTCACCATGGGCTTCTCAGGTGTTATTCCTGCTGTTCATGCCCTTGTTATCCATTGGGACCATCAACCCATAATTGCTGCTCTGGGGTATGAACTTGCTATGGCCATTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCAGAACGCTGGAAACCCGGTAAATTTGATATTGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACATAGTGCTGCCACACTAGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

352

Amino Acids

39.99

Weight (kDa)

9.32

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	66 - 333	6.9e-63	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccIII	TCCGGA	2 cut(s)	382, 738
AciI	CCGC	4 cut(s)	157, 266, 578, 652
AcoI	YGGCCR	2 cut(s)	167, 864
AcsI	RAATTY	2 cut(s)	304, 932
AcuI	CTGAAG	1 cut(s)	172
AcyI	GRCGYC	2 cut(s)	565, 687
AdeI	CACNNNGTG	1 cut(s)	1001
AfaI	GTAC	2 cut(s)	140, 448
AfiI	CCNNNNNNNGG	2 cut(s)	738, 769
AflII	CTTAAG	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	397, 550, 672
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	5 cut(s)	293, 355, 459, 510, 887
AluI	AGCT	5 cut(s)	293, 355, 459, 510, 887
Alw21I	GWGCWC	2 cut(s)	295, 991
Alw26I	GTCTC	2 cut(s)	367, 725
Alw44I	GTGCAC	1 cut(s)	987
Aor13HI	TCCGGA	2 cut(s)	382, 738
AoxI	GGCC	6 cut(s)	14, 167, 329, 461, 750, 864
ApaLI	GTGCAC	1 cut(s)	987
ApeKI	GCWGC	9 cut(s)	36, 49, 52, 55, 159, 495, 507, 839, 1004
ApoI	RAATTY	2 cut(s)	304, 932
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspS9I	GGNCC	4 cut(s)	14, 329, 750, 820
AsuC2I	CCSGG	2 cut(s)	927, 1034
AsuHPI	GGTGA	2 cut(s)	280, 757
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	991
BalI	TGGCCA	2 cut(s)	169, 866
BanII	GRGCYC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	295, 991
BbvI	GCAGC	9 cut(s)	48, 61, 64, 67, 146, 482, 519, 826, 991
BccI	CCATC	3 cut(s)	431, 831, 963
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	202
BciVI	GTATCC	1 cut(s)	900
BcnI	CCSGG	2 cut(s)	927, 1034
BcoDI	GTCTC	2 cut(s)	367, 725
BfaI	CTAG	3 cut(s)	263, 312, 1013
BfmI	CTRYAG	1 cut(s)	505
BfrI	CTTAAG	1 cut(s)	478
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	900
BglII	AGATCT	1 cut(s)	960
BisI	GCNGC	9 cut(s)	37, 50, 53, 56, 160, 496, 508, 840, 1005
BlsI	GCNGC	9 cut(s)	38, 51, 54, 57, 161, 497, 509, 841, 1006
Bme1390I	CCNGG	3 cut(s)	202, 927, 1034
Bme18I	GGWCC	1 cut(s)	820
BmgT120I	GGNCC	4 cut(s)	14, 329, 750, 820
BmiI	GGNNCC	1 cut(s)	821
BmrFI	CCNGG	3 cut(s)	202, 927, 1034
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	523
Bpu14I	TTCGAA	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	927, 1034
BsaHI	GRCGYC	2 cut(s)	565, 687
BsaJI	CCNNGG	5 cut(s)	17, 464, 768, 879, 1033
BsaWI	WCCGGW	2 cut(s)	382, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 769
Bse1I	ACTGG	1 cut(s)	150
BseAI	TCCGGA	2 cut(s)	382, 738
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	5 cut(s)	17, 464, 768, 879, 1033
BseGI	GGATG	2 cut(s)	96, 184
BseLI	CCNNNNNNNGG	2 cut(s)	738, 769
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	991
BseXI	GCAGC	9 cut(s)	48, 61, 64, 67, 146, 482, 519, 826, 991
BseYI	CCCAGC	2 cut(s)	298, 887
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	6 cut(s)	16, 169, 331, 463, 752, 866
BsiHKAI	GWGCWC	2 cut(s)	295, 991
BsiSI	CCGG	4 cut(s)	383, 739, 927, 1033
BslFI	GGGAC	2 cut(s)	273, 833
BslI	CCNNNNNNNGG	2 cut(s)	738, 769
BsmAI	GTCTC	2 cut(s)	367, 725
BsmFI	GGGAC	2 cut(s)	273, 833
BsnI	GGCC	6 cut(s)	16, 169, 331, 463, 752, 866
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	295, 991
Bsp13I	TCCGGA	2 cut(s)	382, 738
Bsp143I	GATC	1 cut(s)	960
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	4 cut(s)	157, 266, 578, 652
BspANI	GGCC	6 cut(s)	16, 169, 331, 463, 752, 866
BspCNI	CTCAG	1 cut(s)	791
BspEI	TCCGGA	2 cut(s)	382, 738
BspLI	GGNNCC	1 cut(s)	821
BspMAI	CTGCAG	1 cut(s)	509
BspMI	ACCTGC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	5 cut(s)	17, 464, 768, 879, 1033
BssMI	GATC	1 cut(s)	960
BssNI	GRCGYC	2 cut(s)	565, 687
BssT1I	CCWWGG	2 cut(s)	464, 768
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	120
Bst6I	CTCTTC	3 cut(s)	23, 673, 764
BstACI	GRCGYC	2 cut(s)	565, 687
BstAFI	CTTAAG	1 cut(s)	478
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	461, 580
BstDEI	CTNAG	2 cut(s)	499, 778
BstDSI	CCRYGG	2 cut(s)	768, 879
BstF5I	GGATG	2 cut(s)	96, 184
BstKTI	GATC	1 cut(s)	963
BstMAI	GTCTC	2 cut(s)	367, 725
BstMBI	GATC	1 cut(s)	960
BstMWI	GCNNNNNNNGC	7 cut(s)	55, 377, 504, 800, 884, 1001, 1013
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	3 cut(s)	200, 925, 1032
BstSFI	CTRYAG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	991
BstV1I	GCAGC	9 cut(s)	48, 61, 64, 67, 146, 482, 519, 826, 991
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	960
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	960
BsuI	GTATCC	1 cut(s)	900
BsuRI	GGCC	6 cut(s)	16, 169, 331, 463, 752, 866
BtgI	CCRYGG	2 cut(s)	768, 879
BtsCI	GGATG	2 cut(s)	96, 184
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	634
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	461, 580
Cfr13I	GGNCC	4 cut(s)	14, 329, 750, 820
CseI	GACGC	6 cut(s)	181, 238, 377, 552, 554, 676
Csp6I	GTAC	2 cut(s)	139, 447
CviAII	CATG	4 cut(s)	769, 800, 968, 1021
CviQI	GTAC	2 cut(s)	139, 447
DdeI	CTNAG	2 cut(s)	499, 778
DpnI	GATC	1 cut(s)	962
DpnII	GATC	1 cut(s)	960
DraI	TTTAAA	1 cut(s)	106
DraIII	CACNNNGTG	1 cut(s)	1001
EaeI	YGGCCR	2 cut(s)	167, 864
Eam1104I	CTCTTC	3 cut(s)	23, 673, 764
EarI	CTCTTC	3 cut(s)	23, 673, 764
Ecl136II	GAGCTC	1 cut(s)	293
Eco130I	CCWWGG	2 cut(s)	464, 768
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	820
Eco53kI	GAGCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	464, 768
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	2 cut(s)	464, 768
FaeI	CATG	4 cut(s)	772, 803, 971, 1024
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	2 cut(s)	273, 833
FatI	CATG	4 cut(s)	768, 799, 967, 1020
FauI	CCCGC	2 cut(s)	571, 659
Fnu4HI	GCNGC	9 cut(s)	37, 50, 53, 56, 160, 496, 508, 840, 1005
FokI	GGATG	2 cut(s)	103, 191
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	9 cut(s)	37, 50, 53, 56, 160, 496, 508, 840, 1005
FspBI	CTAG	3 cut(s)	263, 312, 1013
GluI	GCNGC	9 cut(s)	37, 50, 53, 56, 160, 496, 508, 840, 1005
GsaI	CCCAGC	2 cut(s)	302, 891
GsuI	CTGGAG	1 cut(s)	523
HaeIII	GGCC	6 cut(s)	16, 169, 331, 463, 752, 866
HapII	CCGG	4 cut(s)	383, 739, 927, 1033
HgaI	GACGC	6 cut(s)	181, 238, 377, 552, 554, 676
Hin1I	GRCGYC	2 cut(s)	565, 687
Hin1II	CATG	4 cut(s)	772, 803, 971, 1024
HinfI	GANTC	3 cut(s)	386, 410, 718
HpaII	CCGG	4 cut(s)	383, 739, 927, 1033
HphI	GGTGA	2 cut(s)	280, 757
Hpy166II	GTNNAC	1 cut(s)	989
Hpy188I	TCNGA	3 cut(s)	367, 409, 960
Hpy188III	TCNNGA	6 cut(s)	226, 247, 383, 540, 569, 739
Hpy8I	GTNNAC	1 cut(s)	989
Hpy99I	CGWCG	2 cut(s)	337, 371
HpyAV	CCTTC	4 cut(s)	121, 274, 616, 640
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	7 cut(s)	6, 507, 639, 728, 944, 989, 995
HpyF10VI	GCNNNNNNNGC	7 cut(s)	55, 377, 504, 800, 884, 1001, 1013
HpyF3I	CTNAG	2 cut(s)	499, 778
Hsp92I	GRCGYC	2 cut(s)	565, 687
Hsp92II	CATG	4 cut(s)	772, 803, 971, 1024
Kpn2I	TCCGGA	2 cut(s)	382, 738
Kzo9I	GATC	1 cut(s)	960
LmnI	GCTCC	6 cut(s)	290, 385, 515, 608, 619, 884
Lsp1109I	GCAGC	9 cut(s)	48, 61, 64, 67, 146, 482, 519, 826, 991
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	3 cut(s)	263, 312, 1013
MaeIII	GTNAC	2 cut(s)	533, 700
MalI	GATC	1 cut(s)	962
MboI	GATC	1 cut(s)	960
MflI	RGATCY	1 cut(s)	960
MhlI	GDGCHC	2 cut(s)	295, 991
MlsI	TGGCCA	2 cut(s)	169, 866
MluCI	AATT	4 cut(s)	304, 450, 834, 932
MluNI	TGGCCA	2 cut(s)	169, 866
MlyI	GAGTC	2 cut(s)	419, 727
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	12, 55, 81, 227, 524, 533, 773
Mox20I	TGGCCA	2 cut(s)	169, 866
MroI	TCCGGA	2 cut(s)	382, 738
MscI	TGGCCA	2 cut(s)	169, 866
MseI	TTAA	5 cut(s)	99, 105, 173, 357, 479
Msp20I	TGGCCA	2 cut(s)	169, 866
MspA1I	CMGCKG	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	478
MspI	CCGG	4 cut(s)	383, 739, 927, 1033
MspR9I	CCNGG	3 cut(s)	202, 927, 1034
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	7 cut(s)	55, 377, 504, 800, 884, 1001, 1013
NciI	CCSGG	2 cut(s)	927, 1034
NcoI	CCATGG	1 cut(s)	768
NdeII	GATC	1 cut(s)	960
NlaIII	CATG	4 cut(s)	772, 803, 971, 1024
NlaIV	GGNNCC	1 cut(s)	821
NmeAIII	GCCGAG	2 cut(s)	42, 741
NmuCI	GTSAC	1 cut(s)	533
NspV	TTCGAA	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	9 cut(s)	38, 51, 54, 57, 161, 497, 509, 841, 1006
PleI	GAGTC	2 cut(s)	418, 726
PpsI	GAGTC	2 cut(s)	418, 726
Psp124BI	GAGCTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	200
PspFI	CCCAGC	2 cut(s)	298, 887
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	821
PspPI	GGNCC	4 cut(s)	14, 329, 750, 820
PstI	CTGCAG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	960
RsaI	GTAC	2 cut(s)	140, 448
RsaNI	GTAC	2 cut(s)	139, 447
SacI	GAGCTC	1 cut(s)	295
SaqAI	TTAA	5 cut(s)	99, 105, 173, 357, 479
SatI	GCNGC	9 cut(s)	37, 50, 53, 56, 160, 496, 508, 840, 1005
Sau3AI	GATC	1 cut(s)	960
Sau96I	GGNCC	4 cut(s)	14, 329, 750, 820
SchI	GAGTC	2 cut(s)	419, 727
ScrFI	CCNGG	3 cut(s)	202, 927, 1034
SduI	GDGCHC	2 cut(s)	295, 991
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	505
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	1 cut(s)	820
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	4 cut(s)	304, 450, 834, 932
SsiI	CCGC	4 cut(s)	157, 266, 578, 652
SspMI	CTAG	3 cut(s)	263, 312, 1013
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	200, 925, 1032
StyI	CCWWGG	2 cut(s)	464, 768
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	278, 335
TasI	AATT	4 cut(s)	304, 450, 834, 932
TatI	WGTACW	2 cut(s)	138, 446
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	5 cut(s)	99, 105, 173, 357, 479
Tru9I	TTAA	5 cut(s)	99, 105, 173, 357, 479
TscAI	CASTG	1 cut(s)	641
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	9 cut(s)	36, 49, 52, 55, 159, 495, 507, 839, 1004
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	6 cut(s)	140, 356, 362, 406, 788, 867
TspRI	CASTG	1 cut(s)	641
Vha464I	CTTAAG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	987
VpaK11BI	GGWCC	1 cut(s)	820
XapI	RAATTY	2 cut(s)	304, 932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XspI	CTAG	3 cut(s)	263, 312, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.