Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Forward (+)

21159443 .. 21165109

Gene Structure 5667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG126700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGCTCGAAGGATATGGGAGCTCTGCTGGGGAATTTCTCCAGGGCTTCCGTTTCTGGGCCGTCGATGATGAAGATGAACCAGCTTAATGTCTCCGACGCTCTATTTGCTCCGGATTCACATTTGAAGCAAATGTCAGAGTCATTCATTTATGCTAACAAGGAAGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAGACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCAATCCATACTCTCGCTTGTTCTATCTCTCTTCAATATCCATTCTTGGCGTCCTTGTCATCGTTACACTCCTTTCGCCTAGTCTCTCTGCACCCCGTTTTCGGACGTTCAGGGCCACTCTCTTCCTCACCATGGGCTTCTCAGGTGTTATTCCTGCTGTTCATGCCCTTGTTATCCATTGGGACCATCAACCCATAATTGCTGCTCTGGGGTATGAACTTGCTATGGCTATTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCAGAACGCTGGAAGCCCGGTAAATTTGATATTGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACACAGTGCTGCCACACTAGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

262

Amino Acids

29.21

Weight (kDa)

9.07

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	57 - 243	1.4e-56	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	34, 662
AcyI	GRCGYC	2 cut(s)	295, 417
AdeI	CACNNNGTG	1 cut(s)	731
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	3 cut(s)	57, 468, 499
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	127, 280, 402
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	6 cut(s)	6, 23, 85, 189, 240, 617
AluI	AGCT	6 cut(s)	6, 23, 85, 189, 240, 617
Alw21I	GWGCWC	3 cut(s)	8, 25, 721
Alw26I	GTCTC	2 cut(s)	97, 455
Alw44I	GTGCAC	1 cut(s)	717
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	3 cut(s)	59, 191, 480
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	4 cut(s)	225, 237, 569, 734
ApoI	RAATTY	2 cut(s)	34, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspS9I	GGNCC	3 cut(s)	59, 480, 550
AsuC2I	CCSGG	2 cut(s)	657, 764
AsuHPI	GGTGA	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	721
BanII	GRGCYC	2 cut(s)	8, 25
Bbv12I	GWGCWC	3 cut(s)	8, 25, 721
BbvI	GCAGC	4 cut(s)	212, 249, 556, 721
BccI	CCATC	3 cut(s)	161, 561, 693
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	630
BcnI	CCSGG	2 cut(s)	657, 764
BcoDI	GTCTC	2 cut(s)	97, 455
BfaI	CTAG	2 cut(s)	447, 743
BfmI	CTRYAG	1 cut(s)	235
BfrI	CTTAAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	630
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	4 cut(s)	226, 238, 570, 735
BlsI	GCNGC	4 cut(s)	227, 239, 571, 736
Bme1390I	CCNGG	3 cut(s)	43, 657, 764
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	59, 480, 550
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	3 cut(s)	43, 657, 764
BpmI	CTGGAG	2 cut(s)	25, 253
BpuMI	CCSGG	2 cut(s)	657, 764
BsaHI	GRCGYC	2 cut(s)	295, 417
BsaJI	CCNNGG	5 cut(s)	42, 194, 498, 609, 763
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 468, 499
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	5 cut(s)	42, 194, 498, 609, 763
BseLI	CCNNNNNNNGG	3 cut(s)	57, 468, 499
BseMII	CTCAG	1 cut(s)	522
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	4 cut(s)	212, 249, 556, 721
BseYI	CCCAGC	2 cut(s)	28, 617
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	61, 193, 482
BsiHKAI	GWGCWC	3 cut(s)	8, 25, 721
BsiSI	CCGG	3 cut(s)	113, 657, 763
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	3 cut(s)	57, 468, 499
BsmAI	GTCTC	2 cut(s)	97, 455
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	61, 193, 482
Bsp1286I	GDGCHC	3 cut(s)	8, 25, 721
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	690
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	3 cut(s)	61, 193, 482
BspCNI	CTCAG	1 cut(s)	521
BspEI	TCCGGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	1 cut(s)	239
BspTI	CTTAAG	1 cut(s)	208
BssECI	CCNNGG	5 cut(s)	42, 194, 498, 609, 763
BssMI	GATC	1 cut(s)	690
BssNI	GRCGYC	2 cut(s)	295, 417
BssT1I	CCWWGG	2 cut(s)	194, 498
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	731
Bst6I	CTCTTC	2 cut(s)	403, 494
BstACI	GRCGYC	2 cut(s)	295, 417
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	191, 310
BstDEI	CTNAG	2 cut(s)	229, 508
BstDSI	CCRYGG	2 cut(s)	498, 609
BstKTI	GATC	1 cut(s)	693
BstMAI	GTCTC	2 cut(s)	97, 455
BstMBI	GATC	1 cut(s)	690
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 234, 530, 614, 731, 743
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	41, 655, 762
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	4 cut(s)	212, 249, 556, 721
BstX2I	RGATCY	1 cut(s)	690
BstXI	CCANNNNNNTGG	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	61, 193, 482
BtgI	CCRYGG	2 cut(s)	498, 609
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	364, 736
Cac8I	GCNNGC	2 cut(s)	191, 310
Cfr13I	GGNCC	3 cut(s)	59, 480, 550
CseI	GACGC	4 cut(s)	107, 282, 284, 406
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	4 cut(s)	499, 530, 698, 751
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	229, 508
DpnI	GATC	1 cut(s)	692
DpnII	GATC	1 cut(s)	690
DraIII	CACNNNGTG	1 cut(s)	731
Eam1104I	CTCTTC	2 cut(s)	403, 494
EarI	CTCTTC	2 cut(s)	403, 494
Ecl136II	GAGCTC	2 cut(s)	6, 23
Eco130I	CCWWGG	2 cut(s)	194, 498
Eco24I	GRGCYC	2 cut(s)	8, 25
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	2 cut(s)	6, 23
EcoICRI	GAGCTC	2 cut(s)	6, 23
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	2 cut(s)	194, 498
EcoT38I	GRGCYC	2 cut(s)	8, 25
ErhI	CCWWGG	2 cut(s)	194, 498
FaeI	CATG	4 cut(s)	502, 533, 701, 754
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	4 cut(s)	498, 529, 697, 750
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	226, 238, 570, 735
FriOI	GRGCYC	2 cut(s)	8, 25
Fsp4HI	GCNGC	4 cut(s)	226, 238, 570, 735
FspBI	CTAG	2 cut(s)	447, 743
GluI	GCNGC	4 cut(s)	226, 238, 570, 735
GsaI	CCCAGC	2 cut(s)	32, 621
GsuI	CTGGAG	2 cut(s)	25, 253
HaeIII	GGCC	3 cut(s)	61, 193, 482
HapII	CCGG	3 cut(s)	113, 657, 763
HgaI	GACGC	4 cut(s)	107, 282, 284, 406
Hin1I	GRCGYC	2 cut(s)	295, 417
Hin1II	CATG	4 cut(s)	502, 533, 701, 754
HinfI	GANTC	2 cut(s)	116, 140
HpaII	CCGG	3 cut(s)	113, 657, 763
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	1 cut(s)	719
Hpy188I	TCNGA	4 cut(s)	97, 139, 471, 690
Hpy188III	TCNNGA	3 cut(s)	113, 270, 299
Hpy8I	GTNNAC	1 cut(s)	719
Hpy99I	CGWCG	2 cut(s)	67, 101
HpyAV	CCTTC	3 cut(s)	4, 346, 370
HpyCH4III	ACNGT	1 cut(s)	731
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	237, 369, 458, 674, 719, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 234, 530, 614, 731, 743
HpyF3I	CTNAG	2 cut(s)	229, 508
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	2 cut(s)	295, 417
Hsp92II	CATG	4 cut(s)	502, 533, 701, 754
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	690
LmnI	GCTCC	6 cut(s)	20, 115, 245, 338, 349, 614
Lsp1109I	GCAGC	4 cut(s)	212, 249, 556, 721
MaeI	CTAG	2 cut(s)	447, 743
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	263, 430
MalI	GATC	1 cut(s)	692
MboI	GATC	1 cut(s)	690
MboII	GAAGA	5 cut(s)	85, 176, 390, 481, 685
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	3 cut(s)	8, 25, 721
MluCI	AATT	4 cut(s)	34, 180, 564, 662
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	254, 263, 503
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	2 cut(s)	87, 209
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	3 cut(s)	113, 657, 763
MspR9I	CCNGG	3 cut(s)	43, 657, 764
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	6 cut(s)	107, 234, 530, 614, 731, 743
NciI	CCSGG	2 cut(s)	657, 764
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	1 cut(s)	690
NlaIII	CATG	4 cut(s)	502, 533, 701, 754
NlaIV	GGNNCC	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	227, 239, 571, 736
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp124BI	GAGCTC	2 cut(s)	8, 25
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	2 cut(s)	28, 617
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	3 cut(s)	59, 480, 550
PstI	CTGCAG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacI	GAGCTC	2 cut(s)	8, 25
SaqAI	TTAA	2 cut(s)	87, 209
SatI	GCNGC	4 cut(s)	226, 238, 570, 735
Sau3AI	GATC	1 cut(s)	690
Sau96I	GGNCC	3 cut(s)	59, 480, 550
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	43, 657, 764
SduI	GDGCHC	3 cut(s)	8, 25, 721
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	4 cut(s)	34, 180, 564, 662
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	2 cut(s)	447, 743
SstI	GAGCTC	2 cut(s)	8, 25
StyD4I	CCNGG	3 cut(s)	41, 655, 762
StyI	CCWWGG	2 cut(s)	194, 498
TaaI	ACNGT	1 cut(s)	731
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	2 cut(s)	8, 65
TasI	AATT	4 cut(s)	34, 180, 564, 662
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	87, 209
Tru9I	TTAA	2 cut(s)	87, 209
TscAI	CASTG	2 cut(s)	371, 736
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	4 cut(s)	225, 237, 569, 734
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	5 cut(s)	86, 92, 136, 518, 597
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	371, 736
Vha464I	CTTAAG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	2 cut(s)	34, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	2 cut(s)	447, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.