Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Reverse (-)

40829966 .. 40832715

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTGCATTCACGGGGCGAGGTCGGCGAAGAGTAGCAGCAGCAGTAGTAGGCAGCAGCAGCAGCAGGAGAAGAAGAAGAAGAAGAAGACGAGGATGCTGGTTAAGTTTAAAGACCTGCCACAGTATATGAAGGACAACGAGTACATACTGGACTATTACCGCTGCGAGTGGCCGTTAAAGGATATCATCTTCAGCGTCTTTGCCTGGCACAACGAAACCCTCAACATCTGGACGCATTTGTTGGGGTTCATGATATTCGTGGGACTAGCCGTGATGAGCTCGAAGGATATGGGAGCTCTGCTCGGGAATTTCTCCAGGGCTTCGGTTTCTGGGCCGTCGATGATGAAGATGAACCAGCTTAATGTCTCCGACACTCTATTTGCTCCGGATTCACATTTGAAGCAAATGTCAGAGTCATTCATTCATGCTAACAAGGAAGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTGGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAGACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACATTCCACTGCAATCCATACTCTAGCCTTTTCTATCTCTCTTCAATATCCATTCTTGGCGTCCTTGTCATCGTTACACTCCTTTCGCCGAGTCTCTCTGCACCCCGTTTCCGGACGTTCAGGGCTACTCTCTTCCTCACCATGGGCTTTTCAGGTGTTATTCCTGCTGTTCATGCCCTTGTTATCCATTGGGACCATCAACCCGTAATTGTTGCTCTGGGGTATGAACTTGCTATGGCTATTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCAGAACGCTGGAAACCCGGTAAATTTGATATTGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTGGGTGCACTTGCACACAGTGTTGCCACACTAGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

354

Amino Acids

40.03

Weight (kDa)

9.33

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	67 - 334	3e-62	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AccIII	TCCGGA	2 cut(s)	385, 741
AciI	CCGC	2 cut(s)	160, 581
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	307, 935
AcuI	CTGAAG	1 cut(s)	175
AcyI	GRCGYC	2 cut(s)	568, 690
AdeI	CACNNNGTG	1 cut(s)	1004
AfaI	GTAC	2 cut(s)	143, 451
AfiI	CCNNNNNNNGG	2 cut(s)	741, 772
AflII	CTTAAG	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	400, 553, 675
AjnI	CCWGG	2 cut(s)	203, 314
AluBI	AGCT	6 cut(s)	279, 296, 358, 462, 513, 890
AluI	AGCT	6 cut(s)	279, 296, 358, 462, 513, 890
Alw21I	GWGCWC	3 cut(s)	281, 298, 994
Alw26I	GTCTC	2 cut(s)	370, 728
Alw44I	GTGCAC	1 cut(s)	990
Ama87I	CYCGRG	1 cut(s)	302
Aor13HI	TCCGGA	2 cut(s)	385, 741
AoxI	GGCC	3 cut(s)	170, 332, 464
ApaLI	GTGCAC	1 cut(s)	990
ApeKI	GCWGC	9 cut(s)	36, 39, 52, 55, 58, 61, 162, 498, 510
ApoI	RAATTY	2 cut(s)	307, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspS9I	GGNCC	2 cut(s)	332, 823
AsuC2I	CCSGG	2 cut(s)	930, 1037
AsuHPI	GGTGA	1 cut(s)	760
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	823
BaeGI	GKGCMC	1 cut(s)	994
BanII	GRGCYC	2 cut(s)	281, 298
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	3 cut(s)	281, 298, 994
BbvI	GCAGC	9 cut(s)	48, 51, 64, 67, 70, 73, 149, 485, 522
BccI	CCATC	3 cut(s)	434, 834, 966
BceAI	ACGGC	3 cut(s)	157, 254, 319
BciT130I	CCWGG	2 cut(s)	205, 316
BciVI	GTATCC	1 cut(s)	903
BcnI	CCSGG	2 cut(s)	930, 1037
BcoDI	GTCTC	2 cut(s)	370, 728
BfaI	CTAG	3 cut(s)	266, 654, 1016
BfmI	CTRYAG	1 cut(s)	508
BfrI	CTTAAG	1 cut(s)	481
BfuAI	ACCTGC	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	903
BglII	AGATCT	1 cut(s)	963
BisI	GCNGC	9 cut(s)	37, 40, 53, 56, 59, 62, 163, 499, 511
BlsI	GCNGC	9 cut(s)	38, 41, 54, 57, 60, 63, 164, 500, 512
Bme1390I	CCNGG	4 cut(s)	205, 316, 930, 1037
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	332, 823
BmiI	GGNNCC	1 cut(s)	824
BmrFI	CCNGG	4 cut(s)	205, 316, 930, 1037
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpmI	CTGGAG	2 cut(s)	298, 526
BpuMI	CCSGG	2 cut(s)	930, 1037
BsaHI	GRCGYC	2 cut(s)	568, 690
BsaJI	CCNNGG	5 cut(s)	315, 467, 771, 882, 1036
BsaWI	WCCGGW	2 cut(s)	385, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	741, 772
Bse1I	ACTGG	1 cut(s)	153
BseAI	TCCGGA	2 cut(s)	385, 741
BseBI	CCWGG	2 cut(s)	205, 316
BseDI	CCNNGG	5 cut(s)	315, 467, 771, 882, 1036
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	741, 772
BseNI	ACTGG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	9 cut(s)	48, 51, 64, 67, 70, 73, 149, 485, 522
BseYI	CCCAGC	1 cut(s)	890
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	172, 334, 466
BsiHKAI	GWGCWC	3 cut(s)	281, 298, 994
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	386, 742, 930, 1036
BslFI	GGGAC	2 cut(s)	276, 836
BslI	CCNNNNNNNGG	2 cut(s)	741, 772
BsmAI	GTCTC	2 cut(s)	370, 728
BsmFI	GGGAC	2 cut(s)	276, 836
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	3 cut(s)	172, 334, 466
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	281, 298, 994
Bsp13I	TCCGGA	2 cut(s)	385, 741
Bsp143I	GATC	1 cut(s)	963
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	2 cut(s)	160, 581
BspANI	GGCC	3 cut(s)	172, 334, 466
BspEI	TCCGGA	2 cut(s)	385, 741
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	824
BspMAI	CTGCAG	1 cut(s)	512
BspMI	ACCTGC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	5 cut(s)	315, 467, 771, 882, 1036
BssMI	GATC	1 cut(s)	963
BssNI	GRCGYC	2 cut(s)	568, 690
BssT1I	CCWWGG	2 cut(s)	467, 771
Bst2UI	CCWGG	2 cut(s)	205, 316
Bst4CI	ACNGT	2 cut(s)	123, 1004
Bst6I	CTCTTC	3 cut(s)	23, 676, 767
BstACI	GRCGYC	2 cut(s)	568, 690
BstAFI	CTTAAG	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	464, 583
BstDSI	CCRYGG	2 cut(s)	771, 882
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	966
BstMAI	GTCTC	2 cut(s)	370, 728
BstMBI	GATC	1 cut(s)	963
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 58, 61, 507, 803, 887, 1016
BstNI	CCWGG	2 cut(s)	205, 316
BstSCI	CCNGG	4 cut(s)	203, 314, 928, 1035
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	994
BstV1I	GCAGC	9 cut(s)	48, 51, 64, 67, 70, 73, 149, 485, 522
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	963
BstXI	CCANNNNNNTGG	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	903
BsuRI	GGCC	3 cut(s)	172, 334, 466
BtgI	CCRYGG	2 cut(s)	771, 882
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	637, 1009
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	464, 583
CciI	TCATGA	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	332, 823
CseI	GACGC	5 cut(s)	184, 241, 555, 557, 679
Csp6I	GTAC	2 cut(s)	142, 450
CviAII	CATG	6 cut(s)	250, 425, 772, 803, 971, 1024
CviQI	GTAC	2 cut(s)	142, 450
DpnI	GATC	1 cut(s)	965
DpnII	GATC	1 cut(s)	963
DraI	TTTAAA	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	1004
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	3 cut(s)	23, 676, 767
EarI	CTCTTC	3 cut(s)	23, 676, 767
Ecl136II	GAGCTC	2 cut(s)	279, 296
Eco130I	CCWWGG	2 cut(s)	467, 771
Eco24I	GRGCYC	2 cut(s)	281, 298
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	823
Eco53kI	GAGCTC	2 cut(s)	279, 296
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	2 cut(s)	279, 296
EcoRII	CCWGG	2 cut(s)	203, 314
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	467, 771
EcoT38I	GRGCYC	2 cut(s)	281, 298
ErhI	CCWWGG	2 cut(s)	467, 771
FaeI	CATG	6 cut(s)	253, 428, 775, 806, 974, 1027
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	2 cut(s)	276, 836
FatI	CATG	6 cut(s)	249, 424, 771, 802, 970, 1023
FauI	CCCGC	1 cut(s)	574
Fnu4HI	GCNGC	9 cut(s)	37, 40, 53, 56, 59, 62, 163, 499, 511
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	2 cut(s)	281, 298
Fsp4HI	GCNGC	9 cut(s)	37, 40, 53, 56, 59, 62, 163, 499, 511
FspBI	CTAG	3 cut(s)	266, 654, 1016
GluI	GCNGC	9 cut(s)	37, 40, 53, 56, 59, 62, 163, 499, 511
GsaI	CCCAGC	1 cut(s)	894
GsuI	CTGGAG	2 cut(s)	298, 526
HaeIII	GGCC	3 cut(s)	172, 334, 466
HapII	CCGG	4 cut(s)	386, 742, 930, 1036
HgaI	GACGC	5 cut(s)	184, 241, 555, 557, 679
Hin1I	GRCGYC	2 cut(s)	568, 690
Hin1II	CATG	6 cut(s)	253, 428, 775, 806, 974, 1027
HinfI	GANTC	3 cut(s)	389, 413, 721
HpaII	CCGG	4 cut(s)	386, 742, 930, 1036
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	1 cut(s)	992
Hpy188I	TCNGA	3 cut(s)	370, 412, 963
Hpy188III	TCNNGA	7 cut(s)	229, 250, 304, 386, 543, 572, 742
Hpy8I	GTNNAC	1 cut(s)	992
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	124, 277, 619
HpyCH4III	ACNGT	2 cut(s)	123, 1004
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	7 cut(s)	6, 510, 642, 731, 947, 992, 998
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 58, 61, 507, 803, 887, 1016
HpySE526I	ACGT	1 cut(s)	746
Hsp92I	GRCGYC	2 cut(s)	568, 690
Hsp92II	CATG	6 cut(s)	253, 428, 775, 806, 974, 1027
Kpn2I	TCCGGA	2 cut(s)	385, 741
Kzo9I	GATC	1 cut(s)	963
LmnI	GCTCC	6 cut(s)	293, 388, 518, 611, 622, 887
Lsp1109I	GCAGC	9 cut(s)	48, 51, 64, 67, 70, 73, 149, 485, 522
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	266, 654, 1016
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	2 cut(s)	536, 703
MalI	GATC	1 cut(s)	965
MboI	GATC	1 cut(s)	963
MflI	RGATCY	1 cut(s)	963
MhlI	GDGCHC	3 cut(s)	281, 298, 994
MluCI	AATT	4 cut(s)	307, 453, 837, 935
MlyI	GAGTC	2 cut(s)	422, 730
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	6 cut(s)	12, 84, 230, 527, 536, 776
MroI	TCCGGA	2 cut(s)	385, 741
MseI	TTAA	5 cut(s)	102, 108, 176, 360, 482
MspA1I	CMGCKG	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	481
MspI	CCGG	4 cut(s)	386, 742, 930, 1036
MspR9I	CCNGG	4 cut(s)	205, 316, 930, 1037
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	2 cut(s)	205, 316
MwoI	GCNNNNNNNGC	7 cut(s)	23, 58, 61, 507, 803, 887, 1016
NciI	CCSGG	2 cut(s)	930, 1037
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	1 cut(s)	963
NlaIII	CATG	6 cut(s)	253, 428, 775, 806, 974, 1027
NlaIV	GGNNCC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	744
NmuCI	GTSAC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	9 cut(s)	38, 41, 54, 57, 60, 63, 164, 500, 512
PleI	GAGTC	2 cut(s)	421, 729
PpsI	GAGTC	2 cut(s)	421, 729
Psp124BI	GAGCTC	2 cut(s)	281, 298
Psp6I	CCWGG	2 cut(s)	203, 314
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	2 cut(s)	203, 314
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	2 cut(s)	332, 823
PstI	CTGCAG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	963
RsaI	GTAC	2 cut(s)	143, 451
RsaNI	GTAC	2 cut(s)	142, 450
SacI	GAGCTC	2 cut(s)	281, 298
SaqAI	TTAA	5 cut(s)	102, 108, 176, 360, 482
SatI	GCNGC	9 cut(s)	37, 40, 53, 56, 59, 62, 163, 499, 511
Sau3AI	GATC	1 cut(s)	963
Sau96I	GGNCC	2 cut(s)	332, 823
SchI	GAGTC	2 cut(s)	422, 730
ScrFI	CCNGG	4 cut(s)	205, 316, 930, 1037
SduI	GDGCHC	3 cut(s)	281, 298, 994
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	508
SinI	GGWCC	1 cut(s)	823
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	4 cut(s)	307, 453, 837, 935
SsiI	CCGC	2 cut(s)	160, 581
SspMI	CTAG	3 cut(s)	266, 654, 1016
SstI	GAGCTC	2 cut(s)	281, 298
StyD4I	CCNGG	4 cut(s)	203, 314, 928, 1035
StyI	CCWWGG	2 cut(s)	467, 771
TaaI	ACNGT	2 cut(s)	123, 1004
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	2 cut(s)	281, 338
TasI	AATT	4 cut(s)	307, 453, 837, 935
TatI	WGTACW	2 cut(s)	141, 449
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	5 cut(s)	102, 108, 176, 360, 482
Tru9I	TTAA	5 cut(s)	102, 108, 176, 360, 482
TscAI	CASTG	2 cut(s)	644, 1009
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	9 cut(s)	36, 39, 52, 55, 58, 61, 162, 498, 510
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	8 cut(s)	143, 238, 359, 365, 409, 413, 791, 870
TspRI	CASTG	2 cut(s)	644, 1009
Vha464I	CTTAAG	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	990
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	2 cut(s)	307, 935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XspI	CTAG	3 cut(s)	266, 654, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.