FvH4_4g08550

Haemolysin-III related

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
8662045 .. 8666786
4742 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08550.t2

Sequence Viewer

Length: 1077 bp
ATGTGCAAGCACGGGAAGAGTAGTAGCGGGAAGCAGCAGCAGCAGCAGCAGAGTGGGAATTACAAAAAGGAAAAGAAGAAGACGACGATGCTGGTAAAGTTTCAGGACCTGCCACAGTATATGAAGGACAACGAGTACATATTGGACTATTACCGCTGCGAATGGCCGTTAAAGGATGTAATCTTCAGTGTCTTCGCTTGGCACAACGAGACCCTCAACATCTGGACGCATTTGTTGGGGTTCTTGATATTCGTGGGACTAACGGTGATGAGCTGGAGAGACCAGGGAGCTCTGCTCGGGAATTTCTCGAGCAGGGATGGGGTTTCTGGGCCGTTGATGATGATGACCATGATGATGAAGATGAACCAGCTTAATGTCTCCGACAGTGTTTTCGCTCAGAATTCACATTTGAAGGAAATGTCACAGTCATCATTCATTCATGCTAGCAAGGAAGATGATTTTAGCACAATTCCAAGCTGGCCTTGGTTTGTGTTCCTAACTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTATCCCACCTCCTTGCTTGTCACTCCAAACGCTTCAACTTTTTCTTTTGGCGTCTCGACTATGCGGGCATTTCCCTTATGATTGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCCATCCATACTCTCGCTTCTTCTATCTTTCTTCCATATCCGTTCTCGGTGTCCTTGTCATCATTACACTCCTCTCGCGGAGTCTCTCCACACCCCGTTTCCGGACATTCAGGGCCACACTCTTCCTCTGCATGGGTTTCTCAGGTGTCATTCCTGCTGTTCACGCCCTTGTTATCCATTGGGACCATAAACCCATAATTGTTGCTCTAGGGTATGAACTTGCTATGGCTGTTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCCGAACGCTGGAAACCCGGTAAATTTGATATAGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACACAGTGCTGCCACACTAGCTGTCATGGATTTTCGCCGGGAATCACCAACCTGTGTATATTAG

Protein Analysis

359

Amino Acids

40.96

Weight (kDa)

9.13

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 65 - 338 2.5e-61 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
AccII CGCG 1 cut(s) 733
AccIII TCCGGA 1 cut(s) 756
AciI CCGC 4 cut(s) 27, 154, 596, 733
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 3 cut(s) 301, 400, 950
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 1 cut(s) 583
AdeI CACNNNGTG 1 cut(s) 1019
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 756, 787, 936
AgsI TTSAA 2 cut(s) 412, 568
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 7 cut(s) 273, 290, 370, 477, 528, 905, 1034
AluI AGCT 7 cut(s) 273, 290, 370, 477, 528, 905, 1034
Alw21I GWGCWC 2 cut(s) 292, 1009
Alw26I GTCTC 5 cut(s) 203, 273, 382, 590, 743
Alw44I GTGCAC 1 cut(s) 1005
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 2 cut(s) 296, 307
Aor13HI TCCGGA 1 cut(s) 756
AoxI GGCC 4 cut(s) 164, 329, 479, 768
ApaLI GTGCAC 1 cut(s) 1005
ApeKI GCWGC 9 cut(s) 34, 37, 40, 43, 46, 156, 513, 525, 1022
ApoI RAATTY 3 cut(s) 301, 400, 950
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
AspS9I GGNCC 4 cut(s) 106, 329, 768, 838
AsuC2I CCSGG 2 cut(s) 945, 1052
AsuHPI GGTGA 2 cut(s) 277, 1050
AsuNHI GCTAGC 1 cut(s) 443
AvaI CYCGRG 2 cut(s) 296, 307
AvaII GGWCC 2 cut(s) 106, 838
BaeGI GKGCMC 1 cut(s) 1009
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 86, 184
Bbv12I GWGCWC 2 cut(s) 292, 1009
BbvI GCAGC 9 cut(s) 46, 49, 52, 55, 58, 143, 500, 537, 1009
BccI CCATC 3 cut(s) 311, 666, 981
BceAI ACGGC 2 cut(s) 151, 316
BciT130I CCWGG 1 cut(s) 284
BciVI GTATCC 1 cut(s) 918
BcnI CCSGG 2 cut(s) 945, 1052
BcoDI GTCTC 5 cut(s) 203, 273, 382, 590, 743
BfaI CTAG 3 cut(s) 444, 863, 1031
BfmI CTRYAG 1 cut(s) 523
BfuAI ACCTGC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 918
BglII AGATCT 1 cut(s) 978
BisI GCNGC 9 cut(s) 35, 38, 41, 44, 47, 157, 514, 526, 1023
BlsI GCNGC 9 cut(s) 36, 39, 42, 45, 48, 158, 515, 527, 1024
Bme1390I CCNGG 3 cut(s) 284, 945, 1052
Bme18I GGWCC 2 cut(s) 106, 838
BmeT110I CYCGRG 2 cut(s) 296, 307
BmgT120I GGNCC 4 cut(s) 106, 329, 768, 838
BmiI GGNNCC 1 cut(s) 839
BmrFI CCNGG 3 cut(s) 284, 945, 1052
BmsI GCATC 1 cut(s) 78
BmtI GCTAGC 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 86, 184
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 1 cut(s) 295
BpuMI CCSGG 2 cut(s) 945, 1052
BsaHI GRCGYC 1 cut(s) 583
BsaI GGTCTC 2 cut(s) 203, 273
BsaJI CCNNGG 3 cut(s) 283, 482, 897
BsaWI WCCGGW 1 cut(s) 756
Bsc4I CCNNNNNNNGG 3 cut(s) 756, 787, 936
Bse1I ACTGG 1 cut(s) 505
BseAI TCCGGA 1 cut(s) 756
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 283, 482, 897
BseGI GGATG 3 cut(s) 181, 322, 658
BseLI CCNNNNNNNGG 3 cut(s) 756, 787, 936
BseMII CTCAG 2 cut(s) 410, 810
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 1 cut(s) 716
BseSI GKGCMC 1 cut(s) 1009
BseXI GCAGC 9 cut(s) 46, 49, 52, 55, 58, 143, 500, 537, 1009
BseYI CCCAGC 1 cut(s) 905
Bsh1236I CGCG 1 cut(s) 733
BshFI GGCC 4 cut(s) 166, 331, 481, 770
BsiHKAI GWGCWC 2 cut(s) 292, 1009
BsiHKCI CYCGRG 2 cut(s) 296, 307
BsiSI CCGG 3 cut(s) 757, 945, 1051
BslFI GGGAC 2 cut(s) 270, 851
BslI CCNNNNNNNGG 3 cut(s) 756, 787, 936
BsmAI GTCTC 5 cut(s) 203, 273, 382, 590, 743
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 270, 851
BsnI GGCC 4 cut(s) 166, 331, 481, 770
Bso31I GGTCTC 2 cut(s) 203, 273
BsoBI CYCGRG 2 cut(s) 296, 307
Bsp1286I GDGCHC 2 cut(s) 292, 1009
Bsp13I TCCGGA 1 cut(s) 756
Bsp143I GATC 1 cut(s) 978
BspACI CCGC 4 cut(s) 27, 154, 596, 733
BspANI GGCC 4 cut(s) 166, 331, 481, 770
BspCNI CTCAG 2 cut(s) 409, 809
BspEI TCCGGA 1 cut(s) 756
BspFNI CGCG 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 839
BspMAI CTGCAG 1 cut(s) 527
BspMI ACCTGC 1 cut(s) 117
BspOI GCTAGC 1 cut(s) 447
BspTNI GGTCTC 2 cut(s) 203, 273
BsrI ACTGG 1 cut(s) 505
BssECI CCNNGG 3 cut(s) 283, 482, 897
BssMI GATC 1 cut(s) 978
BssNI GRCGYC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 5 cut(s) 117, 265, 386, 426, 1019
Bst6I CTCTTC 2 cut(s) 11, 782
BstACI GRCGYC 1 cut(s) 583
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstC8I GCNNGC 4 cut(s) 8, 445, 479, 598
BstDEI CTNAG 3 cut(s) 396, 517, 796
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 3 cut(s) 181, 322, 658
BstFNI CGCG 1 cut(s) 733
BstKTI GATC 1 cut(s) 981
BstMAI GTCTC 5 cut(s) 203, 273, 382, 590, 743
BstMBI GATC 1 cut(s) 978
BstMWI GCNNNNNNNGC 8 cut(s) 40, 43, 46, 522, 818, 902, 1019, 1031
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 282, 943, 1050
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 1009
BstUI CGCG 1 cut(s) 733
BstV1I GCAGC 9 cut(s) 46, 49, 52, 55, 58, 143, 500, 537, 1009
BstV2I GAAGAC 2 cut(s) 86, 184
BstX2I RGATCY 1 cut(s) 978
BstYI RGATCY 1 cut(s) 978
BsuI GTATCC 1 cut(s) 918
BsuRI GGCC 4 cut(s) 166, 331, 481, 770
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 3 cut(s) 181, 322, 658
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 4 cut(s) 193, 391, 652, 1024
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 4 cut(s) 8, 445, 479, 598
CaiI CAGNNNCTG 1 cut(s) 109
Cfr13I GGNCC 4 cut(s) 106, 329, 768, 838
CseI GACGC 2 cut(s) 235, 572
Csp6I GTAC 1 cut(s) 136
CviAII CATG 5 cut(s) 349, 440, 787, 986, 1039
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 3 cut(s) 396, 517, 796
DpnI GATC 1 cut(s) 980
DpnII GATC 1 cut(s) 978
DraIII CACNNNGTG 1 cut(s) 1019
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 2 cut(s) 11, 782
EarI CTCTTC 2 cut(s) 11, 782
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 203, 273
Eco47I GGWCC 2 cut(s) 106, 838
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 2 cut(s) 296, 307
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 482
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 5 cut(s) 352, 443, 790, 989, 1042
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FaqI GGGAC 2 cut(s) 270, 851
FatI CATG 5 cut(s) 348, 439, 786, 985, 1038
FauI CCCGC 2 cut(s) 20, 589
Fnu4HI GCNGC 9 cut(s) 35, 38, 41, 44, 47, 157, 514, 526, 1023
FokI GGATG 3 cut(s) 188, 329, 645
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 9 cut(s) 35, 38, 41, 44, 47, 157, 514, 526, 1023
FspBI CTAG 3 cut(s) 444, 863, 1031
GluI GCNGC 9 cut(s) 35, 38, 41, 44, 47, 157, 514, 526, 1023
GsaI CCCAGC 1 cut(s) 909
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 4 cut(s) 166, 331, 481, 770
HapII CCGG 3 cut(s) 757, 945, 1051
HgaI GACGC 2 cut(s) 235, 572
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 5 cut(s) 352, 443, 790, 989, 1042
HinfI GANTC 2 cut(s) 736, 1055
HpaII CCGG 3 cut(s) 757, 945, 1051
HphI GGTGA 2 cut(s) 277, 1050
Hpy166II GTNNAC 2 cut(s) 817, 1007
Hpy188I TCNGA 3 cut(s) 382, 399, 978
Hpy188III TCNNGA 7 cut(s) 104, 223, 244, 298, 307, 587, 757
Hpy8I GTNNAC 2 cut(s) 817, 1007
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 4 cut(s) 118, 406, 634, 658
HpyCH4III ACNGT 5 cut(s) 117, 265, 386, 426, 1019
HpyCH4V TGCA 5 cut(s) 6, 525, 786, 1007, 1013
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 43, 46, 522, 818, 902, 1019, 1031
HpyF3I CTNAG 3 cut(s) 396, 517, 796
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 5 cut(s) 352, 443, 790, 989, 1042
Kpn2I TCCGGA 1 cut(s) 756
Kzo9I GATC 1 cut(s) 978
LmnI GCTCC 5 cut(s) 287, 533, 626, 637, 902
Lsp1109I GCAGC 9 cut(s) 46, 49, 52, 55, 58, 143, 500, 537, 1009
LweI GCATC 1 cut(s) 78
MaeI CTAG 3 cut(s) 444, 863, 1031
MaeIII GTNAC 2 cut(s) 420, 551
MalI GATC 1 cut(s) 980
MboI GATC 1 cut(s) 978
MflI RGATCY 1 cut(s) 978
MhlI GDGCHC 2 cut(s) 292, 1009
MluCI AATT 6 cut(s) 58, 301, 400, 468, 852, 950
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 4 cut(s) 224, 551, 737, 791
MroI TCCGGA 1 cut(s) 756
MseI TTAA 2 cut(s) 170, 372
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 3 cut(s) 757, 945, 1051
MspR9I CCNGG 3 cut(s) 284, 945, 1052
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 733
MwoI GCNNNNNNNGC 8 cut(s) 40, 43, 46, 522, 818, 902, 1019, 1031
NciI CCSGG 2 cut(s) 945, 1052
NdeII GATC 1 cut(s) 978
NheI GCTAGC 1 cut(s) 443
NlaIII CATG 5 cut(s) 352, 443, 790, 989, 1042
NlaIV GGNNCC 1 cut(s) 839
NmuCI GTSAC 2 cut(s) 420, 551
PaeR7I CTCGAG 1 cut(s) 307
PfeI GAWTC 1 cut(s) 1055
PkrI GCNGC 9 cut(s) 36, 39, 42, 45, 48, 158, 515, 527, 1024
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 839
PspPI GGNCC 4 cut(s) 106, 329, 768, 838
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 978
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 170, 372
SatI GCNGC 9 cut(s) 35, 38, 41, 44, 47, 157, 514, 526, 1023
Sau3AI GATC 1 cut(s) 978
Sau96I GGNCC 4 cut(s) 106, 329, 768, 838
SchI GAGTC 1 cut(s) 745
ScrFI CCNGG 3 cut(s) 284, 945, 1052
SduI GDGCHC 2 cut(s) 292, 1009
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 523
Sfr274I CTCGAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 106, 838
SlaI CTCGAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 6 cut(s) 58, 301, 400, 468, 852, 950
SsiI CCGC 4 cut(s) 27, 154, 596, 733
SspMI CTAG 3 cut(s) 444, 863, 1031
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 282, 943, 1050
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 5 cut(s) 117, 265, 386, 426, 1019
TaqI TCGA 2 cut(s) 308, 588
TasI AATT 6 cut(s) 58, 301, 400, 468, 852, 950
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 1055
Tru1I TTAA 2 cut(s) 170, 372
Tru9I TTAA 2 cut(s) 170, 372
TscAI CASTG 4 cut(s) 193, 391, 659, 1024
TseFI GTSAC 2 cut(s) 420, 551
TseI GCWGC 9 cut(s) 34, 37, 40, 43, 46, 156, 513, 525, 1022
Tsp45I GTSAC 2 cut(s) 420, 551
TspDTI ATGAA 6 cut(s) 137, 371, 377, 424, 428, 885
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 4 cut(s) 193, 391, 659, 1024
VneI GTGCAC 1 cut(s) 1005
VpaK11BI GGWCC 2 cut(s) 106, 838
XapI RAATTY 3 cut(s) 301, 400, 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XhoI CTCGAG 1 cut(s) 307
XspI CTAG 3 cut(s) 444, 863, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.