AT2G24440

Selenium binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014423
Physical Location & Seq
Forward (+)
10391075 .. 10393934
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24440.1

Sequence Viewer

Length: 552 bp
ATGGCGAGTAAGAAGGTTGACGGAGAAGGAAAAGGGAAAGCTATAGCGAATACGAGGATGCTTCGAAGCATGGATCGAAAGACTCGAAGCGATACTAAGCGAGATGGTTCTTCTTCTAAGCTCATGAAGATCGAATCTCCGGAGAAGAAGAAACGGAAGACGACGAAAGCGAAGAATGTTGGAGCTGCGAAGAAGAAGGTAAAGAAAGAAGAGGTAGCTGTGAAAATCGAGAAAGAGGAGGAGGAAGATGATGATGCTGCAGAGAAAGAAGAAGATGACGACTCCGATAAGAAGAAGATTGTGATCGAGCATTGCAAACAATGCAAATCATTCAAGGAGAGGGCTAATGAGGTGAAGGAAGGTCTAGAGGAAGCTGTTCCTGGCATCATTGTCACTGTGAATCCTGATAAGCCAAGGCGTGGTTGCTTTGAGATTCGAGAGGAAGGCGGCGAGACATTCATCAGTCTTTTGGCTATGAAGCGCCCATTTACACCGATGAAGGAACTTAACATGGAAGAGGTCATTGCGGACATCGTAGAGAAGATTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.71

Weight (kDa)

8.92

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 2 cut(s) 447, 527
AclWI GGATC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 5 cut(s) 41, 121, 185, 218, 374
AluI AGCT 5 cut(s) 41, 121, 185, 218, 374
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 185, 257
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 364
AsuII TTCGAA 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 172, 244
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 2 cut(s) 42, 258
BfoI RGCGCY 1 cut(s) 484
BisI GCNGC 3 cut(s) 186, 258, 448
BlsI GCNGC 3 cut(s) 187, 259, 449
Bme1390I CCNGG 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 48, 244, 393
BpiI GAAGAC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse3DI GCAATG 2 cut(s) 310, 522
Bse8I GATNNNNATC 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 1 cut(s) 63
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 2 cut(s) 310, 522
BseRI GAGGAG 2 cut(s) 251, 254
BseXI GCAGC 2 cut(s) 172, 244
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 3 cut(s) 73, 129, 303
BspACI CCGC 2 cut(s) 447, 527
BspEI TCCGGA 1 cut(s) 139
BspHI TCATGA 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 310, 522
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 3 cut(s) 73, 129, 303
BssT1I CCWWGG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 2 cut(s) 204, 510
BstAPI GCANNNNNTGC 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 96, 117
BstF5I GGATG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 3 cut(s) 76, 132, 306
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 3 cut(s) 73, 129, 303
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 42, 258
BstV1I GCAGC 2 cut(s) 172, 244
BstV2I GAAGAC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 483
CviAII CATG 3 cut(s) 70, 124, 511
CviJI RGCY 8 cut(s) 41, 121, 185, 218, 344, 374, 412, 473
CviKI_1 RGCY 8 cut(s) 41, 121, 185, 218, 344, 374, 412, 473
DdeI CTNAG 2 cut(s) 96, 117
DpnI GATC 3 cut(s) 75, 131, 305
DpnII GATC 3 cut(s) 73, 129, 303
Eam1104I CTCTTC 2 cut(s) 204, 510
EarI CTCTTC 2 cut(s) 204, 510
Eco130I CCWWGG 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 3 cut(s) 73, 127, 514
FaiI YATR 5 cut(s) 44, 71, 125, 476, 512
FatI CATG 3 cut(s) 69, 123, 510
Fnu4HI GCNGC 3 cut(s) 186, 258, 448
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 186, 258, 448
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 482
GluI GCNGC 3 cut(s) 186, 258, 448
HaeII RGCGCY 1 cut(s) 484
HapII CCGG 1 cut(s) 140
HhaI GCGC 1 cut(s) 483
Hin1II CATG 3 cut(s) 73, 127, 514
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 5 cut(s) 82, 134, 281, 400, 433
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 6 cut(s) 124, 140, 229, 365, 404, 437
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 7 cut(s) 7, 20, 190, 349, 353, 437, 493
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4V TGCA 3 cut(s) 260, 315, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 2 cut(s) 96, 117
Hsp92II CATG 3 cut(s) 73, 127, 514
HspAI GCGC 1 cut(s) 481
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 3 cut(s) 73, 129, 303
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 4 cut(s) 153, 366, 393, 417
Lsp1109I GCAGC 2 cut(s) 172, 244
LweI GCATC 3 cut(s) 48, 244, 393
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 75, 131, 305
MboI GATC 3 cut(s) 73, 129, 303
MlyI GAGTC 2 cut(s) 76, 275
MmeI TCCRAC 1 cut(s) 160
MroI TCCGGA 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 2 cut(s) 507, 546
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 3 cut(s) 73, 129, 303
NlaIII CATG 3 cut(s) 73, 127, 514
NmuCI GTSAC 1 cut(s) 391
NspV TTCGAA 1 cut(s) 64
PagI TCATGA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 167
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 134, 400, 433
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 3 cut(s) 187, 259, 449
PleI GAGTC 2 cut(s) 76, 275
PpsI GAGTC 2 cut(s) 76, 275
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PstI CTGCAG 1 cut(s) 262
SaqAI TTAA 2 cut(s) 507, 546
SatI GCNGC 3 cut(s) 186, 258, 448
Sau3AI GATC 3 cut(s) 73, 129, 303
SchI GAGTC 2 cut(s) 76, 275
ScrFI CCNGG 1 cut(s) 381
SfaNI GCATC 3 cut(s) 48, 244, 393
SfcI CTRYAG 2 cut(s) 42, 258
SfuI TTCGAA 1 cut(s) 64
SsiI CCGC 2 cut(s) 447, 527
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 1 cut(s) 397
TaqI TCGA 7 cut(s) 64, 76, 85, 132, 228, 306, 436
TauI GCSGC 1 cut(s) 450
TfiI GAWTC 3 cut(s) 134, 400, 433
Tru1I TTAA 2 cut(s) 507, 546
Tru9I TTAA 2 cut(s) 507, 546
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 185, 257
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 4 cut(s) 140, 448, 491, 512
TspGWI ACGGA 2 cut(s) 36, 169
TspRI CASTG 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 419
XbaI TCTAGA 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.