Prupe.1G462000_v2.0.a1

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014423
Physical Location & Seq
Reverse (-)
38618645 .. 38622971
4327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G462000.1

Sequence Viewer

Length: 711 bp
ATGGCGCCGAGGAAACGCAAGAATCAGAAAGAGGAGCCGGCCGAGGTGACCACGGTGACGACCACGGTGGTGACTCACAGCTCCACTAGGCGAGTGACTCGGAGCTTGACTCGGGAAGCTTCGAGTGCAAACCCGGTTGAGTCACGTCCCGAGTTTCCGGCGCGGAAGAAGGCCAAGGGAGCTCAGAAGAAGAAGGAGCCGAAGAAAGAGAAGGCGGAAGAGGAAGAGAAAGACGAAGCGGAAGCGGAAGGGGAAGATGTGGAGGAAGAGAAGGAGAAGGCCGAAGAGAGCGAGGAGGGGGCTGAGGCCGAGGGCGAGAAAGAGGAGGTCGAAGGAGACGAAGCTGAGGAGAATGATGGTGAGGAAACGGAGGGGGCTGAGACTGAGGGCGAGAAAGATGAGGTCGAAGGAGACGAAGCTGAGGAGAATGATGGTGAGGGGTCAAACAAGAAGACCATTGTGATTGAGCACTGCAAGCAATGCAATTCATTCAAGACAAGAGCTAATCAGGTCAAAGGTGGTTTAGAGAAAGGCGTTCCTGGTATCACAGTTCTCATAAACCCTGATAAGCCAAGAAGGGGCTGCTTTGAAATACGGGAGGAAGGTGGTGAGACATTCATCAGTCTTTTGGGCATGAAGCGACCGTTTAAACCAATGAAGGATCTGAACATGGAGGAAGTCATTGGCAATATAATTGAGAAGATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.27

Weight (kDa)

4.77

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 163
AciI CCGC 4 cut(s) 163, 215, 239, 245
AclWI GGATC 1 cut(s) 669
AcoI YGGCCR 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 2 cut(s) 493, 590
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 538
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 7 cut(s) 81, 105, 119, 182, 344, 419, 503
AluI AGCT 7 cut(s) 81, 105, 119, 182, 344, 419, 503
Alw21I GWGCWC 2 cut(s) 184, 471
Alw26I GTCTC 4 cut(s) 330, 374, 405, 605
AlwI GGATC 1 cut(s) 669
Ama87I CYCGRG 2 cut(s) 111, 149
AoxI GGCC 4 cut(s) 39, 171, 279, 306
ApeKI GCWGC 1 cut(s) 582
AspLEI GCGC 2 cut(s) 7, 163
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 6 cut(s) 58, 67, 82, 371, 446, 620
AvaI CYCGRG 2 cut(s) 111, 149
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 2 cut(s) 184, 471
BbvCI CCTCAGC 3 cut(s) 303, 345, 420
BbvI GCAGC 1 cut(s) 569
BccI CCATC 2 cut(s) 350, 425
BciT130I CCWGG 1 cut(s) 540
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 4 cut(s) 330, 374, 405, 605
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 583
BlsI GCNGC 1 cut(s) 584
Bme1390I CCNGG 2 cut(s) 134, 540
BmeT110I CYCGRG 2 cut(s) 111, 149
BmgBI CACGTC 1 cut(s) 146
BmiI GGNNCC 3 cut(s) 6, 36, 198
BmrFI CCNGG 2 cut(s) 134, 540
BpiI GAAGAC 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 3 cut(s) 303, 345, 420
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 6 cut(s) 8, 42, 51, 63, 174, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse118I RCCGGY 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 6 cut(s) 8, 42, 51, 63, 174, 309
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 6 cut(s) 197, 294, 336, 369, 375, 411
BseRI GAGGAG 5 cut(s) 47, 308, 338, 362, 437
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 569
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 2 cut(s) 42, 644
BshFI GGCC 4 cut(s) 41, 173, 281, 308
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 2 cut(s) 42, 644
BsiHKAI GWGCWC 2 cut(s) 184, 471
BsiHKCI CYCGRG 2 cut(s) 111, 149
BsiSI CCGG 3 cut(s) 38, 134, 158
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 4 cut(s) 330, 374, 405, 605
BsmBI CGTCTC 2 cut(s) 330, 405
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 4 cut(s) 41, 173, 281, 308
BsoBI CYCGRG 2 cut(s) 111, 149
Bsp1286I GDGCHC 2 cut(s) 184, 471
Bsp143I GATC 2 cut(s) 661, 702
BspACI CCGC 4 cut(s) 163, 215, 239, 245
BspANI GGCC 4 cut(s) 41, 173, 281, 308
BspCNI CTCAG 6 cut(s) 196, 295, 337, 370, 376, 412
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 6, 36, 198
BspPI GGATC 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 485
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 6 cut(s) 8, 42, 51, 63, 174, 309
BssMI GATC 2 cut(s) 661, 702
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 4 cut(s) 55, 67, 550, 645
Bst6I CTCTTC 4 cut(s) 213, 219, 261, 279
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 39, 476
BstDEI CTNAG 6 cut(s) 183, 303, 345, 378, 384, 420
BstDSI CCRYGG 2 cut(s) 51, 63
BstEII GGTNACC 1 cut(s) 46
BstFNI CGCG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 163
BstKTI GATC 2 cut(s) 664, 705
BstMAI GTCTC 4 cut(s) 330, 374, 405, 605
BstMBI GATC 2 cut(s) 661, 702
BstMCI CGRYCG 2 cut(s) 42, 644
BstMWI GCNNNNNNNGC 4 cut(s) 125, 179, 475, 480
BstNI CCWGG 1 cut(s) 540
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 132, 538
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 4 cut(s) 41, 173, 281, 308
BtgI CCRYGG 2 cut(s) 51, 63
BtrI CACGTC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 39, 476
CfoI GCGC 2 cut(s) 7, 163
Cfr10I RCCGGY 1 cut(s) 37
CviAII CATG 2 cut(s) 634, 670
DdeI CTNAG 6 cut(s) 183, 303, 345, 378, 384, 420
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 663, 704
DpnII GATC 2 cut(s) 661, 702
DraI TTTAAA 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 4 cut(s) 213, 219, 261, 279
EarI CTCTTC 4 cut(s) 213, 219, 261, 279
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 182
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 182
Eco88I CYCGRG 2 cut(s) 111, 149
Eco91I GGTNACC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 184
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 2 cut(s) 330, 405
FaeI CATG 2 cut(s) 637, 673
FaiI YATR 4 cut(s) 557, 635, 671, 692
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 633, 669
Fnu4HI GCNGC 1 cut(s) 583
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 583
FspBI CTAG 1 cut(s) 87
GlaI GCGC 2 cut(s) 6, 162
GluI GCNGC 1 cut(s) 583
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 41, 173, 281, 308
HapII CCGG 3 cut(s) 38, 134, 158
HhaI GCGC 2 cut(s) 7, 163
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 637, 673
Hin6I GCGC 2 cut(s) 5, 161
HinP1I GCGC 2 cut(s) 5, 161
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 5 cut(s) 22, 73, 97, 109, 140
HpaII CCGG 3 cut(s) 38, 134, 158
HphI GGTGA 6 cut(s) 58, 67, 82, 371, 446, 620
Hpy188I TCNGA 4 cut(s) 27, 102, 186, 666
Hpy188III TCNNGA 3 cut(s) 113, 149, 493
HpyCH4III ACNGT 4 cut(s) 55, 67, 550, 645
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 128, 474, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 179, 475, 480
HpyF3I CTNAG 6 cut(s) 183, 303, 345, 378, 384, 420
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 637, 673
HspAI GCGC 2 cut(s) 5, 161
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 2 cut(s) 661, 702
LmnI GCTCC 5 cut(s) 34, 86, 102, 179, 196
LpnPI CCDG 7 cut(s) 51, 147, 171, 494, 525, 552, 576
Lsp1109I GCAGC 1 cut(s) 569
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 5 cut(s) 46, 55, 70, 94, 141
MalI GATC 2 cut(s) 663, 704
MboI GATC 2 cut(s) 661, 702
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 184, 471
MluCI AATT 2 cut(s) 484, 693
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 67, 91, 103, 149
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 3 cut(s) 38, 134, 158
MspR9I CCNGG 2 cut(s) 134, 540
MssI GTTTAAAC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 4 cut(s) 125, 179, 475, 480
NaeI GCCGGC 1 cut(s) 39
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 134
NdeII GATC 2 cut(s) 661, 702
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 2 cut(s) 637, 673
NlaIV GGNNCC 3 cut(s) 6, 36, 198
NmeAIII GCCGAG 3 cut(s) 33, 67, 334
NmuCI GTSAC 5 cut(s) 46, 55, 70, 94, 141
OliI CACNNNNGTG 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 411
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 584
PleI GAGTC 4 cut(s) 67, 91, 103, 148
PluTI GGCGCC 1 cut(s) 8
PmeI GTTTAAAC 1 cut(s) 649
PpsI GAGTC 4 cut(s) 67, 91, 103, 148
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 538
PspEI GGTNACC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 3 cut(s) 6, 36, 198
PsuI RGATCY 1 cut(s) 661
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 1 cut(s) 583
Sau3AI GATC 2 cut(s) 661, 702
SchI GAGTC 4 cut(s) 67, 91, 103, 149
ScrFI CCNGG 2 cut(s) 134, 540
SduI GDGCHC 2 cut(s) 184, 471
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 2 cut(s) 484, 693
SsiI CCGC 4 cut(s) 163, 215, 239, 245
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 87
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 132, 538
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 4 cut(s) 55, 67, 550, 645
TaiI ACGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 122, 330, 405
TasI AATT 2 cut(s) 484, 693
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 5 cut(s) 46, 55, 70, 94, 141
TseI GCWGC 1 cut(s) 582
Tsp45I GTSAC 5 cut(s) 46, 55, 70, 94, 141
TspDTI ATGAA 4 cut(s) 477, 607, 650, 671
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 1 cut(s) 476
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.