MD15G1109600.v1.1

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014423
Physical Location & Seq
Reverse (-)
7656784 .. 7660498
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1109600.v1.1.491

Sequence Viewer

Length: 660 bp
ATGGCGCCGAGGAAACGCAAGCTGACTGCGCAAGAGAAAGAGCAGGTGGCAAGGGTCGGCGCCCAGTTGGAGGCGCTGGTGGCTAGGGACACCGCTCGGGGGGGATCCGCTGAGCGAGTGACCCGGAGTTTGAATCAGACAGCTGCCAGTGGGAGCTCGGCTGAGCCCCGGCCAGTGGCGCCGGCGAGGAAGAAGGCCAAGGGAGCTCAGAAGAAAAAGGAGCCAGCCAAGAAGGTGAAGCCGGCGGCGGAAGAAGCGGAATGGGAGGCTGTGAAGGAAGAGAAGGAGAACTCCGTCGAGAGCGAGGCAGAGGCAGAAGCGGAGAACAAGAACGAGAAAGGGAAAGAGAAACTGGAGGACGACGGAGAAGCTACGAAGCATACTGGCAACGAGTGGGACAAGAGGACCATTGTGATTGAGCACTGGCAATGCAAGTCATTCAAGACAAGAGCTGATGAGGTGAAAGATGGCTTGGAGAAGGGCGTTCCTGGCATCAAAGTTCTACTAAACCCTGATAAGCCAAGAAAAGGATGCTTTGAGATACGGGAGGAAGGCGGCGAGACATTCATCAGTCTTCTGGACATGGAACGACCATTTTCAGAAATGGAGGAGCTGAACATGGAGGAAGTCATTGCCGATATAATTGAGAAGATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.41

Weight (kDa)

5.78

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc16I TGCGCA 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 34
AccB1I GGYRCC 3 cut(s) 4, 59, 178
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 7 cut(s) 93, 108, 245, 248, 257, 320, 555
AclWI GGATC 2 cut(s) 99, 112
AcoI YGGCCR 1 cut(s) 170
AcyI GRCGYC 3 cut(s) 5, 60, 179
AfiI CCNNNNNNNGG 4 cut(s) 70, 99, 175, 527
AgsI TTSAA 2 cut(s) 133, 442
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 7 cut(s) 22, 143, 156, 206, 371, 452, 613
AluI AGCT 7 cut(s) 22, 143, 156, 206, 371, 452, 613
Alw21I GWGCWC 3 cut(s) 158, 208, 423
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 2 cut(s) 99, 112
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 2 cut(s) 170, 195
ApeKI GCWGC 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 5 cut(s) 7, 31, 62, 76, 181
AspS9I GGNCC 1 cut(s) 405
AsuC2I CCSGG 2 cut(s) 124, 169
AsuHPI GGTGA 2 cut(s) 247, 472
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 104
BanI GGYRCC 3 cut(s) 4, 59, 178
BanII GRGCYC 3 cut(s) 158, 168, 208
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 3 cut(s) 158, 208, 423
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 489
BcnI CCSGG 2 cut(s) 124, 169
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 84
BfoI RGCGCY 4 cut(s) 8, 63, 77, 182
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 3 cut(s) 144, 246, 556
BlpI GCTNAGC 2 cut(s) 111, 162
BlsI GCNGC 3 cut(s) 145, 247, 557
Bme1390I CCNGG 3 cut(s) 124, 169, 489
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 5 cut(s) 6, 61, 106, 180, 222
BmrFI CCNGG 3 cut(s) 124, 169, 489
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 501, 521
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 374
Bpu1102I GCTNAGC 2 cut(s) 111, 162
BpuMI CCSGG 2 cut(s) 124, 169
BsaHI GRCGYC 3 cut(s) 5, 60, 179
BsaJI CCNNGG 3 cut(s) 8, 167, 198
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 99, 175, 527
Bse118I RCCGGY 2 cut(s) 181, 241
Bse1I ACTGG 6 cut(s) 64, 147, 173, 357, 388, 428
Bse3DI GCAATG 2 cut(s) 434, 630
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 8, 167, 198
BseGI GGATG 1 cut(s) 536
BseLI CCNNNNNNNGG 4 cut(s) 70, 99, 175, 527
BseMI GCAATG 2 cut(s) 434, 630
BseMII CTCAG 3 cut(s) 102, 153, 221
BseNI ACTGG 6 cut(s) 64, 147, 173, 357, 388, 428
BseRI GAGGAG 1 cut(s) 623
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 2 cut(s) 172, 197
BshNI GGYRCC 3 cut(s) 4, 59, 178
BsiHKAI GWGCWC 3 cut(s) 158, 208, 423
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 4 cut(s) 124, 169, 182, 242
BslFI GGGAC 2 cut(s) 101, 410
BslI CCNNNNNNNGG 4 cut(s) 70, 99, 175, 527
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 2 cut(s) 101, 410
BsnI GGCC 2 cut(s) 172, 197
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 4 cut(s) 158, 168, 208, 423
Bsp143I GATC 2 cut(s) 104, 651
Bsp1720I GCTNAGC 2 cut(s) 111, 162
BspACI CCGC 7 cut(s) 93, 108, 245, 248, 257, 320, 555
BspANI GGCC 2 cut(s) 172, 197
BspCNI CTCAG 3 cut(s) 103, 154, 220
BspLI GGNNCC 5 cut(s) 6, 61, 106, 180, 222
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 2 cut(s) 99, 112
BspT107I GGYRCC 3 cut(s) 4, 59, 178
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 2 cut(s) 434, 630
BsrFI RCCGGY 2 cut(s) 181, 241
BsrI ACTGG 6 cut(s) 64, 147, 173, 357, 388, 428
BssAI RCCGGY 2 cut(s) 181, 241
BssECI CCNNGG 3 cut(s) 8, 167, 198
BssMI GATC 2 cut(s) 104, 651
BssNI GRCGYC 3 cut(s) 5, 60, 179
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 3 cut(s) 5, 60, 179
BstC8I GCNNGC 4 cut(s) 20, 183, 225, 243
BstDEI CTNAG 3 cut(s) 111, 162, 207
BstF5I GGATG 1 cut(s) 536
BstH2I RGCGCY 4 cut(s) 8, 63, 77, 182
BstHHI GCGC 5 cut(s) 7, 31, 62, 76, 181
BstKTI GATC 2 cut(s) 107, 654
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 2 cut(s) 104, 651
BstMWI GCNNNNNNNGC 6 cut(s) 28, 80, 178, 203, 254, 489
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 122, 167, 487
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 2 cut(s) 172, 197
BtsCI GGATG 1 cut(s) 536
BtsIMutI CAGTG 3 cut(s) 154, 180, 421
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 4 cut(s) 20, 183, 225, 243
CfoI GCGC 5 cut(s) 7, 31, 62, 76, 181
Cfr10I RCCGGY 2 cut(s) 181, 241
Cfr13I GGNCC 1 cut(s) 405
CviAII CATG 2 cut(s) 583, 619
DdeI CTNAG 3 cut(s) 111, 162, 207
DinI GGCGCC 3 cut(s) 6, 61, 180
DpnI GATC 2 cut(s) 106, 653
DpnII GATC 2 cut(s) 104, 651
EaeI YGGCCR 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 2 cut(s) 156, 206
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 3 cut(s) 158, 168, 208
Eco47I GGWCC 1 cut(s) 405
Eco53kI GAGCTC 2 cut(s) 156, 206
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 2 cut(s) 156, 206
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 3 cut(s) 158, 168, 208
EgeI GGCGCC 3 cut(s) 6, 61, 180
EheI GGCGCC 3 cut(s) 6, 61, 180
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 586, 622
FaiI YATR 4 cut(s) 381, 584, 620, 641
FaqI GGGAC 2 cut(s) 101, 410
FatI CATG 2 cut(s) 582, 618
Fnu4HI GCNGC 3 cut(s) 144, 246, 556
FokI GGATG 1 cut(s) 543
FriOI GRGCYC 3 cut(s) 158, 168, 208
Fsp4HI GCNGC 3 cut(s) 144, 246, 556
FspBI CTAG 1 cut(s) 84
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 5 cut(s) 6, 30, 61, 75, 180
GluI GCNGC 3 cut(s) 144, 246, 556
GsuI CTGGAG 1 cut(s) 374
HaeII RGCGCY 4 cut(s) 8, 63, 77, 182
HaeIII GGCC 2 cut(s) 172, 197
HapII CCGG 4 cut(s) 124, 169, 182, 242
HhaI GCGC 5 cut(s) 7, 31, 62, 76, 181
Hin1I GRCGYC 3 cut(s) 5, 60, 179
Hin1II CATG 2 cut(s) 586, 622
Hin6I GCGC 5 cut(s) 5, 29, 60, 74, 179
HinP1I GCGC 5 cut(s) 5, 29, 60, 74, 179
HinfI GANTC 1 cut(s) 133
HpaII CCGG 4 cut(s) 124, 169, 182, 242
HphI GGTGA 2 cut(s) 247, 472
Hpy188I TCNGA 3 cut(s) 138, 210, 601
Hpy188III TCNNGA 3 cut(s) 298, 442, 578
Hpy99I CGWCG 2 cut(s) 299, 365
HpyAV CCTTC 6 cut(s) 187, 226, 268, 277, 472, 545
HpyCH4V TGCA 1 cut(s) 432
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 80, 178, 203, 254, 489
HpyF3I CTNAG 3 cut(s) 111, 162, 207
Hsp92I GRCGYC 3 cut(s) 5, 60, 179
Hsp92II CATG 2 cut(s) 586, 622
HspAI GCGC 5 cut(s) 5, 29, 60, 74, 179
KasI GGCGCC 3 cut(s) 4, 59, 178
KroI GCCGGC 2 cut(s) 181, 241
KroNI GCCGGC 2 cut(s) 183, 243
Kzo9I GATC 2 cut(s) 104, 651
LmnI GCTCC 4 cut(s) 153, 203, 220, 610
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 2 cut(s) 501, 521
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 106, 653
MbiI CCGCTC 1 cut(s) 95
MboI GATC 2 cut(s) 104, 651
MboII GAAGA 5 cut(s) 202, 223, 263, 290, 566
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 4 cut(s) 158, 168, 208, 423
MluCI AATT 1 cut(s) 642
Mly113I GGCGCC 3 cut(s) 5, 60, 179
MmeI TCCRAC 1 cut(s) 48
MreI CGCCGGCG 1 cut(s) 181
MroNI GCCGGC 2 cut(s) 181, 241
MspA1I CMGCKG 2 cut(s) 110, 143
MspI CCGG 4 cut(s) 124, 169, 182, 242
MspR9I CCNGG 3 cut(s) 124, 169, 489
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 6 cut(s) 28, 80, 178, 203, 254, 489
NaeI GCCGGC 2 cut(s) 183, 243
NarI GGCGCC 3 cut(s) 5, 60, 179
NciI CCSGG 2 cut(s) 124, 169
NdeII GATC 2 cut(s) 104, 651
NgoMIV GCCGGC 2 cut(s) 181, 241
NlaIII CATG 2 cut(s) 586, 622
NlaIV GGNNCC 5 cut(s) 6, 61, 106, 180, 222
NmeAIII GCCGAG 2 cut(s) 33, 137
NmuCI GTSAC 1 cut(s) 118
NsbI TGCGCA 1 cut(s) 30
PaqCI CACCTGC 1 cut(s) 34
PdiI GCCGGC 2 cut(s) 183, 243
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 145, 247, 557
PluTI GGCGCC 3 cut(s) 8, 63, 182
Psp124BI GAGCTC 2 cut(s) 158, 208
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 5 cut(s) 6, 61, 106, 180, 222
PspPI GGNCC 1 cut(s) 405
PsuI RGATCY 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 143
SacI GAGCTC 2 cut(s) 158, 208
SatI GCNGC 3 cut(s) 144, 246, 556
Sau3AI GATC 2 cut(s) 104, 651
Sau96I GGNCC 1 cut(s) 405
ScrFI CCNGG 3 cut(s) 124, 169, 489
SduI GDGCHC 4 cut(s) 158, 168, 208, 423
SfaNI GCATC 2 cut(s) 501, 521
SfoI GGCGCC 3 cut(s) 6, 61, 180
SgrAI CRCCGGYG 1 cut(s) 181
SinI GGWCC 1 cut(s) 405
Sse9I AATT 1 cut(s) 642
SsiI CCGC 7 cut(s) 93, 108, 245, 248, 257, 320, 555
SspDI GGCGCC 3 cut(s) 4, 59, 178
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 2 cut(s) 158, 208
StyD4I CCNGG 3 cut(s) 122, 167, 487
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 642
TauI GCSGC 2 cut(s) 248, 558
TfiI GAWTC 1 cut(s) 133
TscAI CASTG 3 cut(s) 154, 180, 428
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 2 cut(s) 283, 378
TspRI CASTG 3 cut(s) 154, 180, 428
VpaK11BI GGWCC 1 cut(s) 405
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.