Rroxscaffold_7G00156980

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014423
Physical Location & Seq
Forward (+)
836397 .. 839170
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156980.1

Sequence Viewer

Length: 516 bp
ATGGCGCCGAAGAAACGCAAGGCTGACGAGGAAACCGAGCCGGCCAAGAGCCCCGCCGAGTCAACTCGGATGGTGACTCGTGCTTCAGACGCCGCAGCTCGGCGGCAGACTCGGAGCTCCACTCTGGGAGGTCATGGTAAGAGTGTGAAACCGGTGCCTCGGAAACTGGCTGTGGCGGCGAGGAAGAAGAGCAAGAAGAAAGAGGAGGTGGCCAAGTCTGAAGAAGGTGACGAGGCTGAAGCCGAGGAGGTGAACATGAAGACTATTGTGATTGAGCGCTGCACGCAATGCAATTCATTCAAGACAAGGGCTGATCAGGTGAGAGCTAGTCTGGAGGGTCTGCCTGGCATCAGAGTGACAATTAATCCTATTAAGCCAAGAAGGGGTTGCTTTGAAATACGGGAAGAAGGTGGTGAGACGTTCATCAGTCTTTTGGACATGAAGCGACCATTTAAACCACTGAAGGATCTGAACATGCAGGAAGTCATTGACAATATAATTCAGAAGATCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.1

Weight (kDa)

9.68

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 154
AciI CCGC 4 cut(s) 54, 93, 103, 176
AclWI GGATC 2 cut(s) 474, 502
AcoI YGGCCR 2 cut(s) 42, 210
AcuI CTGAAG 4 cut(s) 69, 240, 258, 482
AcyI GRCGYC 2 cut(s) 5, 90
AfeI AGCGCT 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 99, 383
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 301, 395
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 3 cut(s) 98, 117, 326
AluI AGCT 3 cut(s) 98, 117, 326
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 474, 502
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 2 cut(s) 42, 210
ApeKI GCWGC 2 cut(s) 95, 279
AseI ATTAAT 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 2 cut(s) 7, 279
AsuHPI GGTGA 5 cut(s) 85, 239, 262, 331, 425
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 2 cut(s) 4, 154
BanII GRGCYC 2 cut(s) 53, 119
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 107, 266
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 327
BfoI RGCGCY 2 cut(s) 8, 280
BisI GCNGC 5 cut(s) 93, 96, 104, 177, 280
BlsI GCNGC 5 cut(s) 94, 97, 105, 178, 281
Bme1390I CCNGG 1 cut(s) 345
BmiI GGNNCC 2 cut(s) 6, 156
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpmI CTGGAG 1 cut(s) 353
BsaHI GRCGYC 2 cut(s) 5, 90
BsaJI CCNNGG 2 cut(s) 158, 243
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 383
Bse118I RCCGGY 2 cut(s) 40, 151
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 158, 243
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 99, 383
BseMI GCAATG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 218, 260
BseXI GCAGC 2 cut(s) 107, 266
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 44, 212
BshNI GGYRCC 2 cut(s) 4, 154
BshTI ACCGGT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 41, 152
BslI CCNNNNNNNGG 2 cut(s) 99, 383
BsmAI GTCTC 1 cut(s) 410
BsmBI CGTCTC 1 cut(s) 410
BsnI GGCC 2 cut(s) 44, 212
Bsp1286I GDGCHC 2 cut(s) 53, 119
Bsp143I GATC 3 cut(s) 313, 466, 507
BspACI CCGC 4 cut(s) 54, 93, 103, 176
BspANI GGCC 2 cut(s) 44, 212
BspLI GGNNCC 2 cut(s) 6, 156
BspPI GGATC 2 cut(s) 474, 502
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 2 cut(s) 4, 154
BsrDI GCAATG 1 cut(s) 293
BsrFI RCCGGY 2 cut(s) 40, 151
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 2 cut(s) 40, 151
BssECI CCNNGG 2 cut(s) 158, 243
BssMI GATC 3 cut(s) 313, 466, 507
BssNI GRCGYC 2 cut(s) 5, 90
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 2 cut(s) 5, 90
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 42, 284
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 2 cut(s) 8, 280
BstHHI GCGC 2 cut(s) 7, 279
BstKTI GATC 3 cut(s) 316, 469, 510
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 313, 466, 507
BstMWI GCNNNNNNNGC 4 cut(s) 89, 176, 283, 288
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 107, 266
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 2 cut(s) 466, 507
BstYI RGATCY 2 cut(s) 466, 507
BsuRI GGCC 2 cut(s) 44, 212
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 42, 284
CfoI GCGC 2 cut(s) 7, 279
Cfr10I RCCGGY 2 cut(s) 40, 151
CseI GACGC 1 cut(s) 98
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 4 cut(s) 134, 256, 439, 475
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 315, 468, 509
DpnII GATC 3 cut(s) 313, 466, 507
DraI TTTAAA 1 cut(s) 454
EaeI YGGCCR 2 cut(s) 42, 210
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 53, 119
Eco47III AGCGCT 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 4 cut(s) 69, 240, 258, 482
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 53, 119
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 4 cut(s) 137, 259, 442, 478
FaiI YATR 5 cut(s) 135, 257, 440, 476, 497
FatI CATG 4 cut(s) 133, 255, 438, 474
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 5 cut(s) 93, 96, 104, 177, 280
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 2 cut(s) 53, 119
Fsp4HI GCNGC 5 cut(s) 93, 96, 104, 177, 280
FspBI CTAG 1 cut(s) 327
GlaI GCGC 2 cut(s) 6, 278
GluI GCNGC 5 cut(s) 93, 96, 104, 177, 280
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 2 cut(s) 8, 280
HaeIII GGCC 2 cut(s) 44, 212
HapII CCGG 2 cut(s) 41, 152
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 7, 279
Hin1I GRCGYC 2 cut(s) 5, 90
Hin1II CATG 4 cut(s) 137, 259, 442, 478
Hin6I GCGC 2 cut(s) 5, 277
HinP1I GCGC 2 cut(s) 5, 277
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 59, 76, 109
HpaII CCGG 2 cut(s) 41, 152
HphI GGTGA 5 cut(s) 85, 239, 262, 331, 425
Hpy166II GTNNAC 2 cut(s) 63, 253
Hpy188I TCNGA 8 cut(s) 69, 88, 114, 162, 220, 353, 471, 504
Hpy188III TCNNGA 2 cut(s) 301, 332
Hpy8I GTNNAC 2 cut(s) 63, 253
HpyAV CCTTC 4 cut(s) 218, 375, 401, 457
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 3 cut(s) 282, 291, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 176, 283, 288
HpySE526I ACGT 1 cut(s) 419
Hsp92I GRCGYC 2 cut(s) 5, 90
Hsp92II CATG 4 cut(s) 137, 259, 442, 478
HspAI GCGC 2 cut(s) 5, 277
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 313, 466, 507
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 114, 122
LpnPI CCDG 9 cut(s) 54, 110, 152, 165, 302, 317, 330, 357, 464
Lsp1109I GCAGC 2 cut(s) 107, 266
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 3 cut(s) 73, 227, 355
MalI GATC 3 cut(s) 315, 468, 509
MboI GATC 3 cut(s) 313, 466, 507
MboII GAAGA 7 cut(s) 22, 196, 199, 208, 233, 271, 416
MflI RGATCY 2 cut(s) 466, 507
MhlI GDGCHC 2 cut(s) 53, 119
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 3 cut(s) 292, 360, 498
MluNI TGGCCA 1 cut(s) 212
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 68, 70, 103
Mox20I TGGCCA 1 cut(s) 212
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 212
MseI TTAA 3 cut(s) 363, 372, 453
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 2 cut(s) 41, 152
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 89, 176, 283, 288
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 313, 466, 507
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 4 cut(s) 137, 259, 442, 478
NlaIV GGNNCC 2 cut(s) 6, 156
NmeAIII GCCGAG 3 cut(s) 79, 82, 268
NmuCI GTSAC 3 cut(s) 73, 227, 355
NspI RCATGY 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 42
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 5 cut(s) 94, 97, 105, 178, 281
PleI GAGTC 3 cut(s) 67, 70, 103
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 67, 70, 103
PshBI ATTAAT 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 6, 156
PsuI RGATCY 2 cut(s) 466, 507
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 3 cut(s) 363, 372, 453
SatI GCNGC 5 cut(s) 93, 96, 104, 177, 280
Sau3AI GATC 3 cut(s) 313, 466, 507
SchI GAGTC 3 cut(s) 68, 70, 103
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 2 cut(s) 53, 119
SfaNI GCATC 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 3 cut(s) 292, 360, 498
SsiI CCGC 4 cut(s) 54, 93, 103, 176
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 327
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 343
TaiI ACGT 1 cut(s) 422
TasI AATT 3 cut(s) 292, 360, 498
TauI GCSGC 3 cut(s) 95, 106, 179
Tru1I TTAA 3 cut(s) 363, 372, 453
Tru9I TTAA 3 cut(s) 363, 372, 453
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 3 cut(s) 73, 227, 355
TseI GCWGC 2 cut(s) 95, 279
Tsp45I GTSAC 3 cut(s) 73, 227, 355
TspDTI ATGAA 4 cut(s) 272, 285, 412, 455
TspRI CASTG 1 cut(s) 465
VspI ATTAAT 1 cut(s) 363
XceI RCATGY 1 cut(s) 478
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.