pycom08g11310

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014423
Physical Location & Seq
Forward (+)
9589387 .. 9592392
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g11310.4

Sequence Viewer

Length: 1089 bp
ATGAGCGTGTCCGTAAAGGGGGAGAAATTGTGTGGACTTGGTTGGACCGCCGAAGGCCTTGTCATTTCCTATCTCGAAGTCACCCATTGCGACTCCGTACTCGCTCTTCAATCGACGGCCCACACTCATCCAGCACCCCTAAACCAATCCCCACCGTCTATTCAAATCCACGAACAGCAAAAGCGCGGGAAAATGAAAAAATATCTGCGAGCCAGGGAGTACAAAACGGCACCACCCGGAGCCAGAGGGAGTCACTCAGTCAGTTTCCTCACTTCGTTGCTAGTGAGAGAGCCTAAAACGCAGTGGTTCATCTCCCTCTCTCTCTCTCTCTATCTATCTCGGAGCTCCGTTAGCGTGCTAGGGTTTCTGGGCTTTGTGGGAATGGCGCCGAGGAAACGCAAGACCACTGAGCAAGAAGAAAAGCAGCTGGTGGCTCAGGACTCGGGTCAGCGAGTGACTCGGAGTATGGCTCGGCCGGCTCCGAGTGGGAGCTCGGCTGAGCCACGACCCGTGGCGCCGGCTAGGAAGAAGGCCAAGGAAGCTCAGAAGAAGAAAGGGCGGGCGAAGAAGGAAGAGGTGGAGCCAGAAGAAGCGGAAGCTGTGAAGGAAGAGGAGGACAACTCCGGCGAGAGCAAGACGGAGGCCGAAGAGGAGAACGAGAACAAGAAGAAGAAAGGGAAGGAGAAAGTGGAGGCCGAGGCGGAGAACAAGGAGGAGAAAGGGAAGGAGAAAGTGGAGGCCGAGGCGGAGAACAAGGAGGAGAAAGGGAAAGCGAAAGTGGAGGACGACGGAGAAGGTACGGAGGCTGACGACGACGAGTCGGACAAGAGGACCATTGTGATTGAGCATTGCAAGCAATGCAAGTCATTCAAGGTAAGAGCTGATCAGGTCAAAAATGGTTTGGAGAAAGGTGTTCCTGGCATCAAAGTTCTACTAAACCCTGATAAGCCAAGAAAAGGATGCTTAGAGATACGGGAGGAAGGCGGTGAGACATTCCTCAGTCTTCTGGACATGAAACGACCTTTTTCAAATATGAAGGCGCTGAACATGGAGGAAGTCATTAGCGATATAATTGAGAAGATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.21

Weight (kDa)

8.35

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 229, 385, 514
AccII CGCG 1 cut(s) 186
AciI CCGC 7 cut(s) 48, 186, 559, 593, 701, 746, 984
AcoI YGGCCR 1 cut(s) 473
AcyI GRCGYC 2 cut(s) 386, 515
AfaI GTAC 3 cut(s) 99, 221, 799
AfiI CCNNNNNNNGG 2 cut(s) 18, 956
AgsI TTSAA 4 cut(s) 110, 164, 871, 1029
AhdI GACNNNNNGTC 1 cut(s) 817
AjnI CCWGG 2 cut(s) 212, 916
AluBI AGCT 6 cut(s) 345, 427, 492, 542, 599, 881
AluI AGCT 6 cut(s) 345, 427, 492, 542, 599, 881
Alw21I GWGCWC 2 cut(s) 347, 494
Alw26I GTCTC 1 cut(s) 983
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 7 cut(s) 55, 117, 473, 531, 642, 693, 738
ApeKI GCWGC 1 cut(s) 424
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AspLEI GCGC 4 cut(s) 186, 388, 517, 1042
AspS9I GGNCC 3 cut(s) 45, 118, 831
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 73, 998
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 2 cut(s) 45, 831
BanI GGYRCC 3 cut(s) 229, 385, 514
BanII GRGCYC 2 cut(s) 347, 494
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 1 cut(s) 995
Bbv12I GWGCWC 2 cut(s) 347, 494
BbvI GCAGC 1 cut(s) 436
BceAI ACGGC 2 cut(s) 132, 243
BciT130I CCWGG 2 cut(s) 214, 918
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 983
BfaI CTAG 3 cut(s) 281, 359, 522
BfoI RGCGCY 3 cut(s) 389, 518, 1043
BisI GCNGC 1 cut(s) 425
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 426
Bme1390I CCNGG 3 cut(s) 214, 237, 918
Bme18I GGWCC 2 cut(s) 45, 831
BmeRI GACNNNNNGTC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 3 cut(s) 45, 118, 831
BmiI GGNNCC 6 cut(s) 231, 241, 387, 480, 516, 582
BmrFI CCNGG 3 cut(s) 214, 237, 918
BmsI GCATC 2 cut(s) 930, 950
BoxI GACNNNNGTC 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 995
BplI GAGNNNNNCTC 4 cut(s) 454, 486, 605, 637
Bpu10I CCTNAGC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 237
BsaHI GRCGYC 2 cut(s) 386, 515
BsaJI CCNNGG 6 cut(s) 213, 389, 510, 534, 696, 741
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 956
Bse118I RCCGGY 2 cut(s) 475, 517
Bse3DI GCAATG 3 cut(s) 85, 847, 863
BseBI CCWGG 2 cut(s) 214, 918
BseDI CCNNGG 6 cut(s) 213, 389, 510, 534, 696, 741
BseGI GGATG 2 cut(s) 127, 965
BseLI CCNNNNNNNGG 2 cut(s) 18, 956
BseMI GCAATG 3 cut(s) 85, 847, 863
BseMII CTCAG 6 cut(s) 270, 399, 449, 489, 557, 1012
BseRI GAGGAG 4 cut(s) 626, 665, 728, 773
BseX3I CGGCCG 1 cut(s) 473
BseXI GCAGC 1 cut(s) 436
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 476
BshFI GGCC 7 cut(s) 57, 119, 475, 533, 644, 695, 740
BshNI GGYRCC 3 cut(s) 229, 385, 514
BsiEI CGRYCG 1 cut(s) 476
BsiHKAI GWGCWC 2 cut(s) 347, 494
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 4 cut(s) 237, 476, 518, 624
BslI CCNNNNNNNGG 2 cut(s) 18, 956
BsmAI GTCTC 1 cut(s) 983
BsnI GGCC 7 cut(s) 57, 119, 475, 533, 644, 695, 740
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 347, 494
Bsp143I GATC 2 cut(s) 883, 1080
Bsp1720I GCTNAGC 1 cut(s) 498
BspACI CCGC 7 cut(s) 48, 186, 559, 593, 701, 746, 984
BspANI GGCC 7 cut(s) 57, 119, 475, 533, 644, 695, 740
BspCNI CTCAG 6 cut(s) 269, 400, 448, 490, 556, 1011
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 6 cut(s) 231, 241, 387, 480, 516, 582
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 3 cut(s) 229, 385, 514
BsrDI GCAATG 3 cut(s) 85, 847, 863
BsrFI RCCGGY 2 cut(s) 475, 517
BssAI RCCGGY 2 cut(s) 475, 517
BssECI CCNNGG 6 cut(s) 213, 389, 510, 534, 696, 741
BssMI GATC 2 cut(s) 883, 1080
BssNI GRCGYC 2 cut(s) 386, 515
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 2 cut(s) 214, 918
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 4 cut(s) 111, 567, 603, 642
BstACI GRCGYC 2 cut(s) 386, 515
BstAPI GCANNNNNTGC 1 cut(s) 858
BstC8I GCNNGC 6 cut(s) 210, 356, 477, 519, 561, 854
BstDEI CTNAG 7 cut(s) 256, 408, 435, 498, 543, 964, 998
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 127, 965
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 3 cut(s) 389, 518, 1043
BstHHI GCGC 4 cut(s) 186, 388, 517, 1042
BstKTI GATC 2 cut(s) 886, 1083
BstMAI GTCTC 1 cut(s) 983
BstMBI GATC 2 cut(s) 883, 1080
BstMCI CGRYCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 6 cut(s) 298, 351, 476, 539, 853, 858
BstNI CCWGG 2 cut(s) 214, 918
BstPAI GACNNNNGTC 1 cut(s) 444
BstSCI CCNGG 3 cut(s) 212, 235, 916
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 995
BstZI CGGCCG 1 cut(s) 473
BsuRI GGCC 7 cut(s) 57, 119, 475, 533, 644, 695, 740
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 2 cut(s) 127, 965
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 308, 405
Cac8I GCNNGC 6 cut(s) 210, 356, 477, 519, 561, 854
CfoI GCGC 4 cut(s) 186, 388, 517, 1042
Cfr10I RCCGGY 2 cut(s) 475, 517
Cfr13I GGNCC 3 cut(s) 45, 118, 831
Csp6I GTAC 3 cut(s) 98, 220, 798
CviAII CATG 2 cut(s) 1012, 1048
CviQI GTAC 3 cut(s) 98, 220, 798
DdeI CTNAG 7 cut(s) 256, 408, 435, 498, 543, 964, 998
DinI GGCGCC 2 cut(s) 387, 516
DpnI GATC 2 cut(s) 885, 1082
DpnII GATC 2 cut(s) 883, 1080
DriI GACNNNNNGTC 1 cut(s) 817
EaeI YGGCCR 1 cut(s) 473
EagI CGGCCG 1 cut(s) 473
Eam1104I CTCTTC 4 cut(s) 111, 567, 603, 642
Eam1105I GACNNNNNGTC 1 cut(s) 817
EarI CTCTTC 4 cut(s) 111, 567, 603, 642
EciI GGCGGA 2 cut(s) 716, 761
Ecl136II GAGCTC 2 cut(s) 345, 492
EclXI CGGCCG 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 534
Eco147I AGGCCT 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 347, 494
Eco47I GGWCC 2 cut(s) 45, 831
Eco52I CGGCCG 1 cut(s) 473
Eco53kI GAGCTC 2 cut(s) 345, 492
Eco88I CYCGRG 1 cut(s) 442
EcoICRI GAGCTC 2 cut(s) 345, 492
EcoRII CCWGG 2 cut(s) 212, 916
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 2 cut(s) 347, 494
EgeI GGCGCC 2 cut(s) 387, 516
EheI GGCGCC 2 cut(s) 387, 516
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 2 cut(s) 1015, 1051
FaiI YATR 5 cut(s) 467, 1013, 1034, 1049, 1070
FatI CATG 2 cut(s) 1011, 1047
FauI CCCGC 2 cut(s) 179, 552
FbaI TGATCA 1 cut(s) 883
Fnu4HI GCNGC 1 cut(s) 425
FokI GGATG 2 cut(s) 114, 972
FriOI GRGCYC 2 cut(s) 347, 494
Fsp4HI GCNGC 1 cut(s) 425
FspBI CTAG 3 cut(s) 281, 359, 522
GlaI GCGC 4 cut(s) 185, 387, 516, 1041
GluI GCNGC 1 cut(s) 425
HaeII RGCGCY 3 cut(s) 389, 518, 1043
HaeIII GGCC 7 cut(s) 57, 119, 475, 533, 644, 695, 740
HapII CCGG 4 cut(s) 237, 476, 518, 624
HhaI GCGC 4 cut(s) 186, 388, 517, 1042
Hin1I GRCGYC 2 cut(s) 386, 515
Hin1II CATG 2 cut(s) 1015, 1051
Hin6I GCGC 4 cut(s) 184, 386, 515, 1040
HinP1I GCGC 4 cut(s) 184, 386, 515, 1040
HinfI GANTC 5 cut(s) 92, 250, 440, 457, 818
HpaII CCGG 4 cut(s) 237, 476, 518, 624
HphI GGTGA 2 cut(s) 73, 998
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 5 cut(s) 342, 462, 483, 546, 823
Hpy188III TCNNGA 3 cut(s) 74, 437, 1007
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 4 cut(s) 118, 791, 815, 818
HpyAV CCTTC 9 cut(s) 47, 523, 562, 598, 673, 718, 788, 974, 1030
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 852, 861
HpyF10VI GCNNNNNNNGC 6 cut(s) 298, 351, 476, 539, 853, 858
HpyF3I CTNAG 7 cut(s) 256, 408, 435, 498, 543, 964, 998
Hsp92I GRCGYC 2 cut(s) 386, 515
Hsp92II CATG 2 cut(s) 1015, 1051
HspAI GCGC 4 cut(s) 184, 386, 515, 1040
KasI GGCGCC 2 cut(s) 385, 514
KroI GCCGGC 2 cut(s) 475, 517
KroNI GCCGGC 2 cut(s) 477, 519
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 2 cut(s) 883, 1080
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 6 cut(s) 239, 342, 350, 484, 489, 580
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 2 cut(s) 930, 950
MaeI CTAG 3 cut(s) 281, 359, 522
MaeIII GTNAC 3 cut(s) 79, 251, 454
MalI GATC 2 cut(s) 885, 1082
MboI GATC 2 cut(s) 883, 1080
MhlI GDGCHC 2 cut(s) 347, 494
MluCI AATT 2 cut(s) 26, 1071
Mly113I GGCGCC 2 cut(s) 386, 515
MlyI GAGTC 5 cut(s) 86, 259, 434, 451, 827
MmeI TCCRAC 2 cut(s) 23, 801
MroNI GCCGGC 2 cut(s) 475, 517
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 4 cut(s) 237, 476, 518, 624
MspR9I CCNGG 3 cut(s) 214, 237, 918
MvaI CCWGG 2 cut(s) 214, 918
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 6 cut(s) 298, 351, 476, 539, 853, 858
NaeI GCCGGC 2 cut(s) 477, 519
NarI GGCGCC 2 cut(s) 386, 515
NciI CCSGG 1 cut(s) 237
NdeII GATC 2 cut(s) 883, 1080
NgoMIV GCCGGC 2 cut(s) 475, 517
NlaIII CATG 2 cut(s) 1015, 1051
NlaIV GGNNCC 6 cut(s) 231, 241, 387, 480, 516, 582
NmeAIII GCCGAG 5 cut(s) 414, 451, 473, 721, 766
NmuCI GTSAC 3 cut(s) 79, 251, 454
PceI AGGCCT 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 111
PdiI GCCGGC 2 cut(s) 477, 519
PkrI GCNGC 1 cut(s) 426
PleI GAGTC 5 cut(s) 86, 258, 434, 451, 826
PluTI GGCGCC 2 cut(s) 389, 518
PpsI GAGTC 5 cut(s) 86, 258, 434, 451, 826
PshAI GACNNNNGTC 1 cut(s) 444
Psp124BI GAGCTC 2 cut(s) 347, 494
Psp6I CCWGG 2 cut(s) 212, 916
PspGI CCWGG 2 cut(s) 212, 916
PspN4I GGNNCC 6 cut(s) 231, 241, 387, 480, 516, 582
PspPI GGNCC 3 cut(s) 45, 118, 831
PvuII CAGCTG 1 cut(s) 427
RsaI GTAC 3 cut(s) 99, 221, 799
RsaNI GTAC 3 cut(s) 98, 220, 798
SacI GAGCTC 2 cut(s) 347, 494
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 1 cut(s) 425
Sau3AI GATC 2 cut(s) 883, 1080
Sau96I GGNCC 3 cut(s) 45, 118, 831
SchI GAGTC 5 cut(s) 86, 259, 434, 451, 827
ScrFI CCNGG 3 cut(s) 214, 237, 918
SduI GDGCHC 2 cut(s) 347, 494
SfaNI GCATC 2 cut(s) 930, 950
SfoI GGCGCC 2 cut(s) 387, 516
SinI GGWCC 2 cut(s) 45, 831
Sse9I AATT 2 cut(s) 26, 1071
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 7 cut(s) 48, 186, 559, 593, 701, 746, 984
SspDI GGCGCC 2 cut(s) 385, 514
SspMI CTAG 3 cut(s) 281, 359, 522
SstI GAGCTC 2 cut(s) 347, 494
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 212, 235, 916
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 75, 113
TasI AATT 2 cut(s) 26, 1071
TatI WGTACW 1 cut(s) 219
TscAI CASTG 2 cut(s) 308, 412
TseFI GTSAC 3 cut(s) 79, 251, 454
TseI GCWGC 1 cut(s) 424
Tsp45I GTSAC 3 cut(s) 79, 251, 454
TspDTI ATGAA 4 cut(s) 209, 298, 1028, 1049
TspGWI ACGGA 5 cut(s) 85, 337, 653, 804, 815
TspRI CASTG 2 cut(s) 308, 412
VpaK11BI GGWCC 2 cut(s) 45, 831
XspI CTAG 3 cut(s) 281, 359, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.