Rh6AG510600

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014423
Physical Location & Seq
Reverse (-)
68160702 .. 68163677
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG510600.1

Sequence Viewer

Length: 390 bp
ATGGCGCCGAAGAAACGCAAGGCTGACGAGGAAACCGAGCCGGCCAAGAGCCCCGCCGAGTCAACTCGGATGGTGACTCGTGCCTCAGACGCCGCAGCTCGGCGGCAGACTCGGAGCTCCACTCAGGGAGGTCATGGTAAGAGTGTGAAACCGGTGCCTCGGAAACTGGCTGTGGCGGCGAGGAAGAAGAGCAAGAAGAAAGAGGAGGCCGAATCGGAGCAAGGCGAGGTGGCCAAGTCTGAAGAAGGTGACGAGGAGGTGAACATGAAGACTATTGTGATTGAGCGCTGCACGCAATGCAATTCATTCAAGACAAGGGCTGATCAGGTGAGAGCTAGTCTGGAGGGTCTGCCTGGCATCAGAGTGACAATTAATCCTGTTAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.1

Weight (kDa)

9.8

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 154
AciI CCGC 4 cut(s) 54, 93, 103, 176
AcoI YGGCCR 2 cut(s) 42, 231
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 2 cut(s) 5, 90
AfeI AGCGCT 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 99
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 3 cut(s) 98, 117, 335
AluI AGCT 3 cut(s) 98, 117, 335
Alw21I GWGCWC 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 287
AoxI GGCC 3 cut(s) 42, 207, 231
ApeKI GCWGC 2 cut(s) 95, 288
AseI ATTAAT 1 cut(s) 372
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 2 cut(s) 7, 288
AsuHPI GGTGA 4 cut(s) 85, 260, 271, 340
BalI TGGCCA 1 cut(s) 233
BanI GGYRCC 2 cut(s) 4, 154
BanII GRGCYC 2 cut(s) 53, 119
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 107, 275
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 322
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 2 cut(s) 8, 289
BisI GCNGC 5 cut(s) 93, 96, 104, 177, 289
BlsI GCNGC 5 cut(s) 94, 97, 105, 178, 290
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 2 cut(s) 6, 156
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpmI CTGGAG 1 cut(s) 362
BsaHI GRCGYC 2 cut(s) 5, 90
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse118I RCCGGY 2 cut(s) 40, 151
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 2 cut(s) 99, 137
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 218, 269
BseXI GCAGC 2 cut(s) 107, 275
BsgI GTGCAG 1 cut(s) 274
BshFI GGCC 3 cut(s) 44, 209, 233
BshNI GGYRCC 2 cut(s) 4, 154
BshTI ACCGGT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 41, 152
BslI CCNNNNNNNGG 1 cut(s) 99
BsnI GGCC 3 cut(s) 44, 209, 233
Bsp1286I GDGCHC 2 cut(s) 53, 119
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 4 cut(s) 54, 93, 103, 176
BspANI GGCC 3 cut(s) 44, 209, 233
BspCNI CTCAG 2 cut(s) 98, 136
BspLI GGNNCC 2 cut(s) 6, 156
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 2 cut(s) 4, 154
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 40, 151
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 2 cut(s) 40, 151
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 322
BssNI GRCGYC 2 cut(s) 5, 90
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 2 cut(s) 5, 90
BstAPI GCANNNNNTGC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 42, 293
BstDEI CTNAG 2 cut(s) 85, 123
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 2 cut(s) 8, 289
BstHHI GCGC 2 cut(s) 7, 288
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 4 cut(s) 89, 176, 292, 297
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 107, 275
BstV2I GAAGAC 1 cut(s) 275
BsuRI GGCC 3 cut(s) 44, 209, 233
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 42, 293
CfoI GCGC 2 cut(s) 7, 288
Cfr10I RCCGGY 2 cut(s) 40, 151
CseI GACGC 1 cut(s) 98
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 2 cut(s) 134, 265
DdeI CTNAG 2 cut(s) 85, 123
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 42, 231
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 53, 119
Eco47III AGCGCT 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 53, 119
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 137, 268
FaiI YATR 3 cut(s) 135, 266, 388
FatI CATG 2 cut(s) 133, 264
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 5 cut(s) 93, 96, 104, 177, 289
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 2 cut(s) 53, 119
Fsp4HI GCNGC 5 cut(s) 93, 96, 104, 177, 289
FspBI CTAG 1 cut(s) 336
GlaI GCGC 2 cut(s) 6, 287
GluI GCNGC 5 cut(s) 93, 96, 104, 177, 289
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 2 cut(s) 8, 289
HaeIII GGCC 3 cut(s) 44, 209, 233
HapII CCGG 2 cut(s) 41, 152
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 7, 288
Hin1I GRCGYC 2 cut(s) 5, 90
Hin1II CATG 2 cut(s) 137, 268
Hin6I GCGC 2 cut(s) 5, 286
HinP1I GCGC 2 cut(s) 5, 286
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 4 cut(s) 59, 76, 109, 212
HpaII CCGG 2 cut(s) 41, 152
HphI GGTGA 4 cut(s) 85, 260, 271, 340
Hpy166II GTNNAC 2 cut(s) 63, 262
Hpy188I TCNGA 7 cut(s) 69, 88, 114, 162, 217, 241, 362
Hpy188III TCNNGA 2 cut(s) 310, 341
Hpy8I GTNNAC 2 cut(s) 63, 262
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 291, 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 176, 292, 297
HpyF3I CTNAG 2 cut(s) 85, 123
Hsp92I GRCGYC 2 cut(s) 5, 90
Hsp92II CATG 2 cut(s) 137, 268
HspAI GCGC 2 cut(s) 5, 286
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 1 cut(s) 322
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 3 cut(s) 114, 122, 217
LpnPI CCDG 8 cut(s) 54, 110, 152, 165, 311, 326, 339, 366
Lsp1109I GCAGC 2 cut(s) 107, 275
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 73, 248, 364
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 6 cut(s) 22, 196, 199, 208, 254, 280
MhlI GDGCHC 2 cut(s) 53, 119
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 2 cut(s) 301, 369
MluNI TGGCCA 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 68, 70, 103
Mox20I TGGCCA 1 cut(s) 233
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 233
MseI TTAA 2 cut(s) 372, 381
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 233
MspI CCGG 2 cut(s) 41, 152
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 89, 176, 292, 297
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 322
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 137, 268
NlaIV GGNNCC 2 cut(s) 6, 156
NmeAIII GCCGAG 2 cut(s) 79, 82
NmuCI GTSAC 3 cut(s) 73, 248, 364
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 5 cut(s) 94, 97, 105, 178, 290
PleI GAGTC 3 cut(s) 67, 70, 103
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 67, 70, 103
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 6, 156
RseI CAYNNNNRTG 1 cut(s) 362
SacI GAGCTC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 372, 381
SatI GCNGC 5 cut(s) 93, 96, 104, 177, 289
Sau3AI GATC 1 cut(s) 322
SchI GAGTC 3 cut(s) 68, 70, 103
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 53, 119
SetI ASST 9 cut(s) 100, 119, 133, 231, 250, 261, 330, 337, 387
SfaNI GCATC 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 2 cut(s) 301, 369
SsiI CCGC 4 cut(s) 54, 93, 103, 176
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 352
TasI AATT 2 cut(s) 301, 369
TauI GCSGC 3 cut(s) 95, 106, 179
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 372, 381
Tru9I TTAA 2 cut(s) 372, 381
TseFI GTSAC 3 cut(s) 73, 248, 364
TseI GCWGC 2 cut(s) 95, 288
Tsp45I GTSAC 3 cut(s) 73, 248, 364
TspDTI ATGAA 2 cut(s) 281, 294
VspI ATTAAT 1 cut(s) 372
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.