AT4G31360

Selenium binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014423
Physical Location & Seq
Forward (+)
15221843 .. 15223627
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31360.1

Sequence Viewer

Length: 561 bp
ATGCCGCCGAAGAAGAGTAAGGCAGATGGAGAAGAAAAGGCGAAACCTTTAACGACGTTGGCGTCGTCTAGAGTGACTCGGAGCATGGACAGTCGAACTCGAAGTCAGACTCAACAAAACGGTGCTAAAGCGGCTGGATCCGCCACTAAGCCGGCGACGAAGAAGGCTAAGAGGAAGAATTCAGCGATTGAGACTGGGAGAGCCAAGAAGGGAAAGAAGGAAGAGGAAGTTGAAGAGCCAGAGGAAGCCGTTGAGGAGGAGGTTGAGAAGGAAGAGCCAGAGGTTGAGGACCCTACGAGAACCAAGATTGTTATAGAACACTGTAAACAATGCAATGCTTTCAAGACAAGAGCTATTCAGGTGAAGGAAGCTTTGGAGGGAGCTGTTCCTGGCGTCACGGTGTCTCTTAATCCTGAAAAGCCAAGGCGGGGTTGCTTTGAGATCCGGGAGGAAGGTGGCCAAACATTCATCAGTCTTTTGGAGATGAAACGTCCATTTGCACCAATGAAGGCACTTGATATGGAAGAAGTCATCGAGGACATCATAAAGAAAGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

8.86

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AciI CCGC 4 cut(s) 5, 131, 141, 427
AclWI GGATC 3 cut(s) 132, 145, 436
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 1 cut(s) 178
AcyI GRCGYC 2 cut(s) 62, 393
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 2 cut(s) 233, 343
AjnI CCWGG 1 cut(s) 388
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 3 cut(s) 353, 371, 383
AluI AGCT 3 cut(s) 353, 371, 383
Alw26I GTCTC 2 cut(s) 185, 408
AlwI GGATC 3 cut(s) 132, 145, 436
AoxI GGCC 1 cut(s) 457
ApoI RAATTY 1 cut(s) 178
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 459
BamHI GGATCC 1 cut(s) 137
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 390
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 185, 408
BfaI CTAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 5, 132
BlsI GCNGC 2 cut(s) 6, 133
Bme1390I CCNGG 2 cut(s) 390, 446
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 139, 291
BmrFI CCNGG 2 cut(s) 390, 446
BmrI ACTGGG 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 446
BsaHI GRCGYC 2 cut(s) 62, 393
BsaJI CCNNGG 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 269, 272
BshFI GGCC 1 cut(s) 459
BsiSI CCGG 2 cut(s) 152, 445
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 185, 408
BsnI GGCC 1 cut(s) 459
Bsp143I GATC 2 cut(s) 137, 441
BspACI CCGC 4 cut(s) 5, 131, 141, 427
BspANI GGCC 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 139, 291
BspPI GGATC 3 cut(s) 132, 145, 436
BspQI GCTCTTC 2 cut(s) 228, 267
BsrDI GCAATG 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 2 cut(s) 137, 441
BssNI GRCGYC 2 cut(s) 62, 393
BssT1I CCWWGG 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 4 cut(s) 92, 122, 323, 400
Bst6I CTCTTC 4 cut(s) 8, 216, 228, 267
BstACI GRCGYC 2 cut(s) 62, 393
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 147, 168
BstKTI GATC 2 cut(s) 140, 444
BstMAI GTCTC 2 cut(s) 185, 408
BstMBI GATC 2 cut(s) 137, 441
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 388, 444
BstX2I RGATCY 2 cut(s) 137, 441
BstYI RGATCY 2 cut(s) 137, 441
BsuRI GGCC 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 2 cut(s) 51, 382
CviAII CATG 1 cut(s) 85
DdeI CTNAG 2 cut(s) 147, 168
DpnI GATC 2 cut(s) 139, 443
DpnII GATC 2 cut(s) 137, 441
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 4 cut(s) 8, 216, 228, 267
EarI CTCTTC 4 cut(s) 8, 216, 228, 267
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 86, 314, 521, 545
FatI CATG 1 cut(s) 84
FauI CCCGC 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 5, 132
Fsp4HI GCNGC 2 cut(s) 5, 132
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 5, 132
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 152, 445
HgaI GACGC 2 cut(s) 51, 382
Hin1I GRCGYC 2 cut(s) 62, 393
Hin1II CATG 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 2 cut(s) 76, 109
HpaII CCGG 2 cut(s) 152, 445
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 81, 108
Hpy188III TCNNGA 3 cut(s) 69, 343, 413
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 3 cut(s) 58, 67, 160
HpyAV CCTTC 7 cut(s) 157, 202, 211, 262, 358, 446, 502
HpyCH4III ACNGT 4 cut(s) 92, 122, 323, 400
HpyCH4IV ACGT 2 cut(s) 56, 490
HpyCH4V TGCA 2 cut(s) 333, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpyF3I CTNAG 2 cut(s) 147, 168
HpySE526I ACGT 2 cut(s) 56, 490
Hsp92I GRCGYC 2 cut(s) 62, 393
Hsp92II CATG 1 cut(s) 88
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 137, 441
LguI GCTCTTC 2 cut(s) 228, 267
LmnI GCTCC 2 cut(s) 81, 380
MaeI CTAG 1 cut(s) 69
MaeII ACGT 2 cut(s) 56, 490
MaeIII GTNAC 2 cut(s) 73, 394
MalI GATC 2 cut(s) 139, 443
MboI GATC 2 cut(s) 137, 441
MboII GAAGA 9 cut(s) 22, 25, 44, 172, 187, 233, 245, 284, 536
MflI RGATCY 2 cut(s) 137, 441
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 1 cut(s) 178
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 2 cut(s) 70, 103
Mox20I TGGCCA 1 cut(s) 459
MroNI GCCGGC 1 cut(s) 151
MscI TGGCCA 1 cut(s) 459
MseI TTAA 2 cut(s) 50, 408
Msp20I TGGCCA 1 cut(s) 459
MspI CCGG 2 cut(s) 152, 445
MspR9I CCNGG 2 cut(s) 390, 446
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NaeI GCCGGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 446
NdeII GATC 2 cut(s) 137, 441
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 139, 291
NmuCI GTSAC 2 cut(s) 73, 394
PciSI GCTCTTC 2 cut(s) 228, 267
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 62
PdiI GCCGGC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 2 cut(s) 6, 133
PleI GAGTC 2 cut(s) 70, 103
PpsI GAGTC 2 cut(s) 70, 103
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 139, 291
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PsuI RGATCY 2 cut(s) 137, 441
SapI GCTCTTC 2 cut(s) 228, 267
SaqAI TTAA 2 cut(s) 50, 408
SatI GCNGC 2 cut(s) 5, 132
Sau3AI GATC 2 cut(s) 137, 441
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 2 cut(s) 70, 103
ScrFI CCNGG 2 cut(s) 390, 446
SinI GGWCC 1 cut(s) 289
Sse9I AATT 1 cut(s) 178
SsiI CCGC 4 cut(s) 5, 131, 141, 427
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 388, 444
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 4 cut(s) 92, 122, 323, 400
TaiI ACGT 2 cut(s) 59, 493
TaqI TCGA 3 cut(s) 94, 100, 534
TasI AATT 1 cut(s) 178
TauI GCSGC 2 cut(s) 7, 134
Tru1I TTAA 2 cut(s) 50, 408
Tru9I TTAA 2 cut(s) 50, 408
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 2 cut(s) 73, 394
Tsp45I GTSAC 2 cut(s) 73, 394
TspDTI ATGAA 3 cut(s) 457, 500, 521
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 68
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.