RchiOBHm_Chr6g0312181

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014423
Physical Location & Seq
Reverse (-)
68884609 .. 68887681
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28081

Sequence Viewer

Length: 525 bp
ATGGCGCCGAAGAAACGCAAGGCTGACGAGGAAACCGAGCCGGCCAAGAGCCCCGCCGAGTCAACTCGGATGGTGACTCGTGCCTCAGACGCCGCAGCTCGGCGGCAGACTCGGAGCTCCACTCAGGGAGGTCATGGTAAGAGTGTGAAACCGGTGCCTCGGAAACTGGCTGTGGCGGCGAGGAAGAAGAGCAAGAAGAAAGAGGAGGCCGAATCGGAGCAAGGCGAGGTGGCCAAGTCTGAAGAAGGTGACGAGGAGGTGAACATGAAGACTATTGTGATTGAGCGCTGCACGCAATGCAATTCATTCAAGACAAGGGCTGATCAGGTGAGAGCTAGTCTGGAGGGTCTGCCTGGCATCAGAGTGACAATTAATCCTGTTAAGCCAAGAAGGGGTTGCTTTGAAATACGGGAAGAAGGTGGTGAGACGTTCATCAGTCTTTTGGACATGAAGCGACCATTTAAACCAATGAAGGATCTGAACATGCAGGAAGTCATTGACAATATAATTCAGAAGATCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.45

Weight (kDa)

9.59

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 154
AciI CCGC 4 cut(s) 54, 93, 103, 176
AclWI GGATC 2 cut(s) 483, 511
AcoI YGGCCR 2 cut(s) 42, 231
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 2 cut(s) 5, 90
AfeI AGCGCT 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 99, 392
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 310, 404
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 3 cut(s) 98, 117, 335
AluI AGCT 3 cut(s) 98, 117, 335
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 483, 511
Aor51HI AGCGCT 1 cut(s) 287
AoxI GGCC 3 cut(s) 42, 207, 231
ApeKI GCWGC 2 cut(s) 95, 288
AseI ATTAAT 1 cut(s) 372
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 2 cut(s) 7, 288
AsuHPI GGTGA 5 cut(s) 85, 260, 271, 340, 434
BalI TGGCCA 1 cut(s) 233
BanI GGYRCC 2 cut(s) 4, 154
BanII GRGCYC 2 cut(s) 53, 119
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 107, 275
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 2 cut(s) 8, 289
BisI GCNGC 5 cut(s) 93, 96, 104, 177, 289
BlsI GCNGC 5 cut(s) 94, 97, 105, 178, 290
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 2 cut(s) 6, 156
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpmI CTGGAG 1 cut(s) 362
BsaHI GRCGYC 2 cut(s) 5, 90
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 392
Bse118I RCCGGY 2 cut(s) 40, 151
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 99, 392
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 2 cut(s) 99, 137
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 218, 269
BseXI GCAGC 2 cut(s) 107, 275
BsgI GTGCAG 1 cut(s) 274
BshFI GGCC 3 cut(s) 44, 209, 233
BshNI GGYRCC 2 cut(s) 4, 154
BshTI ACCGGT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 41, 152
BslI CCNNNNNNNGG 2 cut(s) 99, 392
BsmAI GTCTC 1 cut(s) 419
BsmBI CGTCTC 1 cut(s) 419
BsnI GGCC 3 cut(s) 44, 209, 233
Bsp1286I GDGCHC 2 cut(s) 53, 119
Bsp143I GATC 3 cut(s) 322, 475, 516
BspACI CCGC 4 cut(s) 54, 93, 103, 176
BspANI GGCC 3 cut(s) 44, 209, 233
BspCNI CTCAG 2 cut(s) 98, 136
BspLI GGNNCC 2 cut(s) 6, 156
BspPI GGATC 2 cut(s) 483, 511
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 2 cut(s) 4, 154
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 40, 151
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 2 cut(s) 40, 151
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 3 cut(s) 322, 475, 516
BssNI GRCGYC 2 cut(s) 5, 90
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 2 cut(s) 5, 90
BstAPI GCANNNNNTGC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 42, 293
BstDEI CTNAG 2 cut(s) 85, 123
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 2 cut(s) 8, 289
BstHHI GCGC 2 cut(s) 7, 288
BstKTI GATC 3 cut(s) 325, 478, 519
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 3 cut(s) 322, 475, 516
BstMWI GCNNNNNNNGC 4 cut(s) 89, 176, 292, 297
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 107, 275
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 2 cut(s) 475, 516
BstYI RGATCY 2 cut(s) 475, 516
BsuRI GGCC 3 cut(s) 44, 209, 233
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 42, 293
CfoI GCGC 2 cut(s) 7, 288
Cfr10I RCCGGY 2 cut(s) 40, 151
CseI GACGC 1 cut(s) 98
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 4 cut(s) 134, 265, 448, 484
DdeI CTNAG 2 cut(s) 85, 123
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 324, 477, 518
DpnII GATC 3 cut(s) 322, 475, 516
DraI TTTAAA 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 42, 231
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 53, 119
Eco47III AGCGCT 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 53, 119
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 4 cut(s) 137, 268, 451, 487
FaiI YATR 5 cut(s) 135, 266, 449, 485, 506
FatI CATG 4 cut(s) 133, 264, 447, 483
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 5 cut(s) 93, 96, 104, 177, 289
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 2 cut(s) 53, 119
Fsp4HI GCNGC 5 cut(s) 93, 96, 104, 177, 289
FspBI CTAG 1 cut(s) 336
GlaI GCGC 2 cut(s) 6, 287
GluI GCNGC 5 cut(s) 93, 96, 104, 177, 289
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 2 cut(s) 8, 289
HaeIII GGCC 3 cut(s) 44, 209, 233
HapII CCGG 2 cut(s) 41, 152
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 7, 288
Hin1I GRCGYC 2 cut(s) 5, 90
Hin1II CATG 4 cut(s) 137, 268, 451, 487
Hin6I GCGC 2 cut(s) 5, 286
HinP1I GCGC 2 cut(s) 5, 286
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 4 cut(s) 59, 76, 109, 212
HpaII CCGG 2 cut(s) 41, 152
HphI GGTGA 5 cut(s) 85, 260, 271, 340, 434
Hpy166II GTNNAC 2 cut(s) 63, 262
Hpy188I TCNGA 9 cut(s) 69, 88, 114, 162, 217, 241, 362, 480, 513
Hpy188III TCNNGA 2 cut(s) 310, 341
Hpy8I GTNNAC 2 cut(s) 63, 262
HpyAV CCTTC 4 cut(s) 239, 384, 410, 466
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 291, 300, 487
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 176, 292, 297
HpyF3I CTNAG 2 cut(s) 85, 123
HpySE526I ACGT 1 cut(s) 428
Hsp92I GRCGYC 2 cut(s) 5, 90
Hsp92II CATG 4 cut(s) 137, 268, 451, 487
HspAI GCGC 2 cut(s) 5, 286
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 3 cut(s) 322, 475, 516
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 3 cut(s) 114, 122, 217
Lsp1109I GCAGC 2 cut(s) 107, 275
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 3 cut(s) 73, 248, 364
MalI GATC 3 cut(s) 324, 477, 518
MboI GATC 3 cut(s) 322, 475, 516
MboII GAAGA 7 cut(s) 22, 196, 199, 208, 254, 280, 425
MflI RGATCY 2 cut(s) 475, 516
MhlI GDGCHC 2 cut(s) 53, 119
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 3 cut(s) 301, 369, 507
MluNI TGGCCA 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 68, 70, 103
Mox20I TGGCCA 1 cut(s) 233
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 233
MseI TTAA 3 cut(s) 372, 381, 462
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 233
MspI CCGG 2 cut(s) 41, 152
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 89, 176, 292, 297
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 322, 475, 516
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 4 cut(s) 137, 268, 451, 487
NlaIV GGNNCC 2 cut(s) 6, 156
NmeAIII GCCGAG 2 cut(s) 79, 82
NmuCI GTSAC 3 cut(s) 73, 248, 364
NspI RCATGY 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 5 cut(s) 94, 97, 105, 178, 290
PleI GAGTC 3 cut(s) 67, 70, 103
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 67, 70, 103
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 6, 156
PsuI RGATCY 2 cut(s) 475, 516
RseI CAYNNNNRTG 1 cut(s) 362
SacI GAGCTC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 3 cut(s) 372, 381, 462
SatI GCNGC 5 cut(s) 93, 96, 104, 177, 289
Sau3AI GATC 3 cut(s) 322, 475, 516
SchI GAGTC 3 cut(s) 68, 70, 103
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 53, 119
SfaNI GCATC 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 3 cut(s) 301, 369, 507
SsiI CCGC 4 cut(s) 54, 93, 103, 176
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 352
TaiI ACGT 1 cut(s) 431
TasI AATT 3 cut(s) 301, 369, 507
TauI GCSGC 3 cut(s) 95, 106, 179
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 3 cut(s) 372, 381, 462
Tru9I TTAA 3 cut(s) 372, 381, 462
TseFI GTSAC 3 cut(s) 73, 248, 364
TseI GCWGC 2 cut(s) 95, 288
Tsp45I GTSAC 3 cut(s) 73, 248, 364
TspDTI ATGAA 5 cut(s) 281, 294, 421, 464, 485
VspI ATTAAT 1 cut(s) 372
XceI RCATGY 1 cut(s) 487
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.