MD00G1173100.v1.1

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014423
Physical Location & Seq
Forward (+)
39966676 .. 39969258
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1173100.v1.1.491

Sequence Viewer

Length: 672 bp
ATGGCGCCGAGGAAACGCAAGACTACTGAGCAAGAAGAAAAGCAGCTGGTGGCTCAGGACTCGGGTCAGCGAGTGACTCGGAGTATGGCTCGGCCGGCTCCGAGTGGGAGCTCGGCTGAGCCACGAGCCGTGGCGCCGCCGGCGAGGAAGAAGGCCAAGGGAGCTCAGAAGAAGAAAGAGCCGGCGAAGAAGGAAGAGGTGGAGGTGGAAGAAGCGGAAGCGGAAGCTGTGAAGGAAGAGGAGGACAACTCCGGCGAGAGCAAGGCGGAGGCCGACGCGGAGAACGAGAACAAGAAGAAGAAAGGGAAGGAGAAAGTGGAGGCCGAGGTGGAGAACAAGGAGGAGAAAGGGAAAGCGAAAGTGGAGGACGACGGAGAAGGTACGGAGGCTGACGACGACGAGTCGGACAAGAGGACCATTGTGATTGAGCATTGCAAGCAATGCAAGTCATTCAAGGTAAGAGCTGATCAGGTCAAAAATGGTTTGGAGAAAGGTGTTCCTGGCATCAAAGTTCTACTAAACCCTGATAAGCCAAGAAAAGGATGCTTAGAGATACGGGAGGAAGGCGGCGAGACATTCCTCAGTCTTCTGGACATGAAACGACCATTTTCAAAAATGAAGGCGCTGAACATGGAGGAAGTCATTAACGATATAGTTGAAAAAATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.78

Weight (kDa)

5.89

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 133
AccII CGCG 1 cut(s) 278
AciI CCGC 6 cut(s) 137, 215, 221, 266, 278, 567
AcoI YGGCCR 1 cut(s) 92
AcyI GRCGYC 2 cut(s) 5, 134
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 539
AgsI TTSAA 3 cut(s) 454, 612, 659
AhdI GACNNNNNGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 5 cut(s) 46, 111, 164, 227, 464
AluI AGCT 5 cut(s) 46, 111, 164, 227, 464
Alw21I GWGCWC 2 cut(s) 113, 166
Alw26I GTCTC 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 4 cut(s) 92, 153, 270, 321
ApeKI GCWGC 1 cut(s) 43
AspLEI GCGC 3 cut(s) 7, 136, 625
AspS9I GGNCC 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 414
BanI GGYRCC 2 cut(s) 4, 133
BanII GRGCYC 2 cut(s) 113, 166
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 2 cut(s) 113, 166
BbvI GCAGC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 501
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 566
BfoI RGCGCY 3 cut(s) 8, 137, 626
BisI GCNGC 3 cut(s) 44, 137, 568
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 3 cut(s) 45, 138, 569
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 414
BmeRI GACNNNNNGTC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 3 cut(s) 6, 99, 135
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 513, 533
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 578
BplI GAGNNNNNCTC 4 cut(s) 73, 105, 233, 265
Bpu10I CCTNAGC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 117
BsaHI GRCGYC 2 cut(s) 5, 134
BsaJI CCNNGG 4 cut(s) 8, 129, 156, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse118I RCCGGY 3 cut(s) 94, 139, 181
Bse3DI GCAATG 2 cut(s) 430, 446
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 4 cut(s) 8, 129, 156, 324
BseGI GGATG 1 cut(s) 548
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 2 cut(s) 430, 446
BseMII CTCAG 5 cut(s) 18, 68, 108, 179, 595
BseRI GAGGAG 2 cut(s) 254, 356
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 94, 155, 272, 323
BshNI GGYRCC 2 cut(s) 4, 133
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 113, 166
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 4 cut(s) 95, 140, 182, 252
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 566
BsnI GGCC 4 cut(s) 94, 155, 272, 323
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 113, 166
Bsp143I GATC 1 cut(s) 466
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 6 cut(s) 137, 215, 221, 266, 278, 567
BspANI GGCC 4 cut(s) 94, 155, 272, 323
BspCNI CTCAG 5 cut(s) 19, 67, 109, 178, 594
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 3 cut(s) 6, 99, 135
BspT107I GGYRCC 2 cut(s) 4, 133
BsrDI GCAATG 2 cut(s) 430, 446
BsrFI RCCGGY 3 cut(s) 94, 139, 181
BssAI RCCGGY 3 cut(s) 94, 139, 181
BssECI CCNNGG 4 cut(s) 8, 129, 156, 324
BssMI GATC 1 cut(s) 466
BssNI GRCGYC 2 cut(s) 5, 134
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 501
Bst6I CTCTTC 2 cut(s) 189, 231
BstACI GRCGYC 2 cut(s) 5, 134
BstAPI GCANNNNNTGC 1 cut(s) 441
BstC8I GCNNGC 4 cut(s) 96, 141, 183, 437
BstDEI CTNAG 6 cut(s) 27, 54, 117, 165, 547, 581
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 548
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 3 cut(s) 8, 137, 626
BstHHI GCGC 3 cut(s) 7, 136, 625
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 1 cut(s) 466
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 5 cut(s) 95, 140, 161, 436, 441
BstNI CCWGG 1 cut(s) 501
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 499
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 578
BstZI CGGCCG 1 cut(s) 92
BsuRI GGCC 4 cut(s) 94, 155, 272, 323
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 548
Cac8I GCNNGC 4 cut(s) 96, 141, 183, 437
CfoI GCGC 3 cut(s) 7, 136, 625
Cfr10I RCCGGY 3 cut(s) 94, 139, 181
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 381
CviAII CATG 2 cut(s) 595, 631
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 6 cut(s) 27, 54, 117, 165, 547, 581
DinI GGCGCC 2 cut(s) 6, 135
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
DriI GACNNNNNGTC 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 189, 231
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 2 cut(s) 189, 231
EciI GGCGGA 1 cut(s) 281
Ecl136II GAGCTC 2 cut(s) 111, 164
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 2 cut(s) 113, 166
Eco47I GGWCC 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 92
Eco53kI GAGCTC 2 cut(s) 111, 164
Eco88I CYCGRG 1 cut(s) 61
EcoICRI GAGCTC 2 cut(s) 111, 164
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 2 cut(s) 113, 166
EgeI GGCGCC 2 cut(s) 6, 135
EheI GGCGCC 2 cut(s) 6, 135
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 598, 634
FaiI YATR 4 cut(s) 86, 596, 632, 653
FatI CATG 2 cut(s) 594, 630
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 44, 137, 568
FokI GGATG 1 cut(s) 555
FriOI GRGCYC 2 cut(s) 113, 166
Fsp4HI GCNGC 3 cut(s) 44, 137, 568
GlaI GCGC 3 cut(s) 6, 135, 624
GluI GCNGC 3 cut(s) 44, 137, 568
HaeII RGCGCY 3 cut(s) 8, 137, 626
HaeIII GGCC 4 cut(s) 94, 155, 272, 323
HapII CCGG 4 cut(s) 95, 140, 182, 252
HgaI GACGC 1 cut(s) 284
HhaI GCGC 3 cut(s) 7, 136, 625
Hin1I GRCGYC 2 cut(s) 5, 134
Hin1II CATG 2 cut(s) 598, 634
Hin6I GCGC 3 cut(s) 5, 134, 623
HinP1I GCGC 3 cut(s) 5, 134, 623
HinfI GANTC 3 cut(s) 59, 76, 401
HpaII CCGG 4 cut(s) 95, 140, 182, 252
Hpy188I TCNGA 4 cut(s) 81, 102, 168, 406
Hpy188III TCNNGA 2 cut(s) 56, 590
Hpy99I CGWCG 4 cut(s) 278, 374, 398, 401
HpyAV CCTTC 7 cut(s) 145, 184, 226, 301, 371, 557, 613
HpyCH4V TGCA 2 cut(s) 435, 444
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 140, 161, 436, 441
HpyF3I CTNAG 6 cut(s) 27, 54, 117, 165, 547, 581
Hsp92I GRCGYC 2 cut(s) 5, 134
Hsp92II CATG 2 cut(s) 598, 634
HspAI GCGC 3 cut(s) 5, 134, 623
KasI GGCGCC 2 cut(s) 4, 133
KroI GCCGGC 3 cut(s) 94, 139, 181
KroNI GCCGGC 3 cut(s) 96, 141, 183
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 3 cut(s) 103, 108, 161
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 513, 533
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MhlI GDGCHC 2 cut(s) 113, 166
Mly113I GGCGCC 2 cut(s) 5, 134
MlyI GAGTC 3 cut(s) 53, 70, 410
MmeI TCCRAC 1 cut(s) 384
MreI CGCCGGCG 1 cut(s) 139
MroNI GCCGGC 3 cut(s) 94, 139, 181
MseI TTAA 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 4 cut(s) 95, 140, 182, 252
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 5 cut(s) 95, 140, 161, 436, 441
NaeI GCCGGC 3 cut(s) 96, 141, 183
NarI GGCGCC 2 cut(s) 5, 134
NdeII GATC 1 cut(s) 466
NgoMIV GCCGGC 3 cut(s) 94, 139, 181
NlaIII CATG 2 cut(s) 598, 634
NlaIV GGNNCC 3 cut(s) 6, 99, 135
NmeAIII GCCGAG 4 cut(s) 33, 70, 92, 349
NmuCI GTSAC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdiI GCCGGC 3 cut(s) 96, 141, 183
PkrI GCNGC 3 cut(s) 45, 138, 569
PleI GAGTC 3 cut(s) 53, 70, 409
PluTI GGCGCC 2 cut(s) 8, 137
PpsI GAGTC 3 cut(s) 53, 70, 409
PshAI GACNNNNGTC 1 cut(s) 63
Psp124BI GAGCTC 2 cut(s) 113, 166
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 3 cut(s) 6, 99, 135
PspPI GGNCC 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SacI GAGCTC 2 cut(s) 113, 166
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 3 cut(s) 44, 137, 568
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 3 cut(s) 53, 70, 410
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 2 cut(s) 113, 166
SfaNI GCATC 2 cut(s) 513, 533
SfoI GGCGCC 2 cut(s) 6, 135
SgrAI CRCCGGYG 1 cut(s) 139
SinI GGWCC 1 cut(s) 414
SsiI CCGC 6 cut(s) 137, 215, 221, 266, 278, 567
SspDI GGCGCC 2 cut(s) 4, 133
SstI GAGCTC 2 cut(s) 113, 166
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 156
TauI GCSGC 2 cut(s) 139, 570
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 611, 632
TspGWI ACGGA 2 cut(s) 387, 398
VpaK11BI GGWCC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.