FvH4_2g30710

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014423
Physical Location & Seq
Forward (+)
23728722 .. 23731756
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30710.t1

Sequence Viewer

Length: 540 bp
ATGGCGCCGAAGAAACGCAAGGCTGACGAGGAACCCGAGCCGGCCAAGAGCCCCGTCGAGTCAACTCGGATGGTGACTCGTGGCTCGGAAGCCGCGGCTCGGCGGCAGACTCGGAGCTCCACTCAGGGAGGTGATGCTAAGAGTGTGAAACCGGTGCCTAAGAAACCGGCGGCGGCGAGGAAGAAGAGCAAGAAGAAGAAAGAGGAGGCCAAATCGGAGCAAGGCGAGGAGGCCGAGTCTGATGAAGAAGTCGACAAGGTTGAAGATGAGGAAGTGAACACCAAGACTATTGTGATTGAACGCTGCACGCAATGCAATTCATTTAAGACAAGGGCCGATCAGGTGAGAGCTAGTTTGGAGAGTCTGCCTGGCATCACTGTGAAAATTAACCCTGTTAAGCCAAGAAGGGGATGCTTTGAGATACGGGAAGAAGGTGGTGAGAAGTTCATCAGTCTTTTGGACATGAAGCGACCATTTAAACCAATGAAGGACCTGAACATGCAGGAAGTAATTGACAATATAATTCAGAAGATCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.11

Weight (kDa)

9.28

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 154
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 95
AciI CCGC 5 cut(s) 93, 95, 103, 170, 173
AclWI GGATC 1 cut(s) 526
AcoI YGGCCR 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 99, 407
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 263, 299
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 2 cut(s) 117, 350
AluI AGCT 2 cut(s) 117, 350
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 1 cut(s) 526
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 4 cut(s) 42, 207, 231, 333
ApeKI GCWGC 1 cut(s) 303
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 333, 490
AsuHPI GGTGA 4 cut(s) 85, 143, 355, 449
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 490
BanI GGYRCC 2 cut(s) 4, 154
BanII GRGCYC 2 cut(s) 53, 119
BauI CACGAG 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 369
BfaI CTAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 6 cut(s) 93, 96, 104, 171, 174, 304
BlsI GCNGC 6 cut(s) 94, 97, 105, 172, 175, 305
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 333, 490
BmiI GGNNCC 3 cut(s) 6, 33, 156
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 3 cut(s) 124, 381, 401
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 407
Bse118I RCCGGY 3 cut(s) 40, 151, 166
Bse1I ACTGG 1 cut(s) 535
Bse3DI GCAATG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 75, 416
BseLI CCNNNNNNNGG 2 cut(s) 99, 407
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 535
BseRI GAGGAG 2 cut(s) 218, 242
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 44, 209, 233, 335
BshNI GGYRCC 2 cut(s) 4, 154
BshTI ACCGGT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 41, 152, 167
BslI CCNNNNNNNGG 2 cut(s) 99, 407
BsnI GGCC 4 cut(s) 44, 209, 233, 335
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 53, 119
Bsp143I GATC 2 cut(s) 337, 531
BspACI CCGC 5 cut(s) 93, 95, 103, 170, 173
BspANI GGCC 4 cut(s) 44, 209, 233, 335
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 6, 33, 156
BspPI GGATC 1 cut(s) 526
BspQI GCTCTTC 1 cut(s) 179
BspT107I GGYRCC 2 cut(s) 4, 154
BsrDI GCAATG 1 cut(s) 317
BsrFI RCCGGY 3 cut(s) 40, 151, 166
BsrI ACTGG 1 cut(s) 535
BssAI RCCGGY 3 cut(s) 40, 151, 166
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 337, 531
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 42, 308
BstDEI CTNAG 3 cut(s) 123, 138, 159
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 75, 416
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 340, 534
BstMBI GATC 2 cut(s) 337, 531
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 367
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 4 cut(s) 44, 209, 233, 335
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 75, 416
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 42, 308
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 3 cut(s) 40, 151, 166
Cfr13I GGNCC 2 cut(s) 333, 490
Cfr42I CCGCGG 1 cut(s) 96
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 2 cut(s) 463, 499
DdeI CTNAG 3 cut(s) 123, 138, 159
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 339, 533
DpnII GATC 2 cut(s) 337, 531
DraI TTTAAA 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 53, 119
Eco47I GGWCC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 2 cut(s) 53, 119
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 466, 502
FaiI YATR 3 cut(s) 464, 500, 521
FatI CATG 2 cut(s) 462, 498
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 6 cut(s) 93, 96, 104, 171, 174, 304
FokI GGATG 2 cut(s) 82, 423
FriOI GRGCYC 2 cut(s) 53, 119
Fsp4HI GCNGC 6 cut(s) 93, 96, 104, 171, 174, 304
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 93, 96, 104, 171, 174, 304
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 44, 209, 233, 335
HapII CCGG 3 cut(s) 41, 152, 167
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 466, 502
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 63, 253
HindII GTYRAC 2 cut(s) 63, 253
HinfI GANTC 5 cut(s) 59, 76, 109, 236, 361
HpaII CCGG 3 cut(s) 41, 152, 167
HphI GGTGA 4 cut(s) 85, 143, 355, 449
Hpy166II GTNNAC 3 cut(s) 63, 253, 277
Hpy188I TCNGA 6 cut(s) 69, 88, 114, 217, 241, 528
Hpy8I GTNNAC 3 cut(s) 63, 253, 277
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 399, 425, 481
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 306, 315, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 3 cut(s) 123, 138, 159
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 466, 502
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
KspI CCGCGG 1 cut(s) 96
Kzo9I GATC 2 cut(s) 337, 531
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 3 cut(s) 114, 122, 217
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 3 cut(s) 124, 381, 401
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 339, 533
MboI GATC 2 cut(s) 337, 531
MboII GAAGA 8 cut(s) 22, 193, 196, 205, 208, 257, 275, 440
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 2 cut(s) 53, 119
MluCI AATT 4 cut(s) 316, 384, 510, 522
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 5 cut(s) 68, 70, 103, 245, 370
MnlI CCTC 8 cut(s) 22, 122, 171, 196, 199, 220, 223, 262
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 4 cut(s) 324, 387, 396, 477
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 41, 152, 167
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 312
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 337, 531
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 466, 502
NlaIV GGNNCC 3 cut(s) 6, 33, 156
NmeAIII GCCGAG 2 cut(s) 79, 259
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 42
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 6 cut(s) 94, 97, 105, 172, 175, 305
PleI GAGTC 5 cut(s) 67, 70, 103, 244, 369
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 5 cut(s) 67, 70, 103, 244, 369
PpuMI RGGWCCY 1 cut(s) 490
Psp124BI GAGCTC 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 6, 33, 156
PspPI GGNCC 2 cut(s) 333, 490
PspPPI RGGWCCY 1 cut(s) 490
PsuI RGATCY 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 119
SacII CCGCGG 1 cut(s) 96
SalI GTCGAC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 4 cut(s) 324, 387, 396, 477
SatI GCNGC 6 cut(s) 93, 96, 104, 171, 174, 304
Sau3AI GATC 2 cut(s) 337, 531
Sau96I GGNCC 2 cut(s) 333, 490
SchI GAGTC 5 cut(s) 68, 70, 103, 245, 370
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 2 cut(s) 53, 119
SetI ASST 7 cut(s) 119, 133, 261, 345, 352, 436, 495
SfaNI GCATC 3 cut(s) 124, 381, 401
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 96
SgrBI CCGCGG 1 cut(s) 96
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 4 cut(s) 316, 384, 510, 522
SsiI CCGC 5 cut(s) 93, 95, 103, 170, 173
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 351
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 379
TaqI TCGA 2 cut(s) 57, 252
TasI AATT 4 cut(s) 316, 384, 510, 522
TauI GCSGC 5 cut(s) 95, 98, 106, 173, 176
Tru1I TTAA 4 cut(s) 324, 387, 396, 477
Tru9I TTAA 4 cut(s) 324, 387, 396, 477
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 5 cut(s) 258, 309, 436, 479, 500
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 490
XceI RCATGY 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.