Rh6BG521700

selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014423
Physical Location & Seq
Reverse (-)
71499052 .. 71501947
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG521700.1

Sequence Viewer

Length: 378 bp
ATGGCGCCGAAGAAACGCAAGGCTGACGAGGAAGCCGAGCCGGCCAAGAGCCCCGCCGAGTCAACTCGGATGGTGACTCGTGCCTCAGAAGCCGCAGCTCGGCGGCAGACTCGGAGCTCCACTCAGGGAGGTCATGGTAAGAGTGTGAAACCGGTGCCTCGGAAACCGGCTGTGGCGGTGAGGAAGAAGAGCAAGAAGAAAGAGGGGGCCGAATCGGAGCAAGGCGACGAGGCTGAAGCCGAGGAGGCAAACATGAAGACTATTGTGATTGAGCGCTGCACGCAATGCAATTCATTCAAGACAAGGGCTGATCAGGTGAGAGCTAGTCTGGAGGGTCTGCCTGGCATCAGAGTGACAATTAATCCTGTTAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.57

Weight (kDa)

9.95

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24440 AT4G31360
fragaria_vesca FvH4_2g30710
malus_domestica MD00G1173100.v1.1 MD08G1134200.v1.1 MD15G1109600.v1.1
prunus_persica Prupe.1G462000_v2.0.a1
pyrus_communis pycom08g11310
rosa_chinensis RchiOBHm_Chr6g0312181
rosa_laevigata RLG00000010345
rosa_roxburghii Rroxscaffold_7G00156980
rosa_rugosa Rorug06G0393600
rosa_samantha Rh6AG510600 Rh6BG521700 Rh6CG527600 Rh6DG513000
rosa_wichuraiana Rw6G044410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 154
AciI CCGC 4 cut(s) 54, 93, 103, 176
AcoI YGGCCR 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 99
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 3 cut(s) 98, 117, 323
AluI AGCT 3 cut(s) 98, 117, 323
Alw21I GWGCWC 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 2 cut(s) 42, 207
ApeKI GCWGC 2 cut(s) 95, 276
AseI ATTAAT 1 cut(s) 360
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 2 cut(s) 7, 276
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 85, 190, 328
BanI GGYRCC 2 cut(s) 4, 154
BanII GRGCYC 2 cut(s) 53, 119
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 107, 263
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 310
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 2 cut(s) 8, 277
BglI GCCNNNNNGGC 2 cut(s) 41, 245
BisI GCNGC 4 cut(s) 93, 96, 104, 277
BlsI GCNGC 4 cut(s) 94, 97, 105, 278
Bme1390I CCNGG 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 3 cut(s) 6, 156, 208
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 263
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpmI CTGGAG 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 158, 240
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse118I RCCGGY 3 cut(s) 40, 151, 166
Bse3DI GCAATG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 158, 240
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 99, 137
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 107, 263
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 2 cut(s) 44, 209
BshNI GGYRCC 2 cut(s) 4, 154
BshTI ACCGGT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 41, 152, 167
BslI CCNNNNNNNGG 1 cut(s) 99
BsnI GGCC 2 cut(s) 44, 209
Bsp1286I GDGCHC 2 cut(s) 53, 119
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 4 cut(s) 54, 93, 103, 176
BspANI GGCC 2 cut(s) 44, 209
BspCNI CTCAG 2 cut(s) 98, 136
BspLI GGNNCC 3 cut(s) 6, 156, 208
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 2 cut(s) 4, 154
BsrDI GCAATG 1 cut(s) 290
BsrFI RCCGGY 3 cut(s) 40, 151, 166
BssAI RCCGGY 3 cut(s) 40, 151, 166
BssECI CCNNGG 2 cut(s) 158, 240
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 42, 281
BstDEI CTNAG 2 cut(s) 85, 123
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 2 cut(s) 8, 277
BstHHI GCGC 2 cut(s) 7, 276
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 5 cut(s) 41, 89, 245, 280, 285
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 107, 263
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 44, 209
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 42, 281
CfoI GCGC 2 cut(s) 7, 276
Cfr10I RCCGGY 3 cut(s) 40, 151, 166
Cfr13I GGNCC 1 cut(s) 207
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 2 cut(s) 134, 253
DdeI CTNAG 2 cut(s) 85, 123
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 53, 119
Eco47III AGCGCT 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 2 cut(s) 53, 119
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 137, 256
FaiI YATR 3 cut(s) 135, 254, 376
FatI CATG 2 cut(s) 133, 252
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 93, 96, 104, 277
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 2 cut(s) 53, 119
Fsp4HI GCNGC 4 cut(s) 93, 96, 104, 277
FspBI CTAG 1 cut(s) 324
GlaI GCGC 2 cut(s) 6, 275
GluI GCNGC 4 cut(s) 93, 96, 104, 277
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 2 cut(s) 8, 277
HaeIII GGCC 2 cut(s) 44, 209
HapII CCGG 3 cut(s) 41, 152, 167
HhaI GCGC 2 cut(s) 7, 276
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 137, 256
Hin6I GCGC 2 cut(s) 5, 274
HinP1I GCGC 2 cut(s) 5, 274
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 4 cut(s) 59, 76, 109, 212
HpaII CCGG 3 cut(s) 41, 152, 167
HphI GGTGA 3 cut(s) 85, 190, 328
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 6 cut(s) 69, 88, 114, 162, 217, 350
Hpy188III TCNNGA 2 cut(s) 298, 329
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 279, 288
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 89, 245, 280, 285
HpyF3I CTNAG 2 cut(s) 85, 123
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 137, 256
HspAI GCGC 2 cut(s) 5, 274
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 3 cut(s) 114, 122, 217
LpnPI CCDG 8 cut(s) 54, 110, 165, 180, 299, 314, 327, 354
Lsp1109I GCAGC 2 cut(s) 107, 263
LweI GCATC 1 cut(s) 354
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 73, 352
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 5 cut(s) 22, 196, 199, 208, 268
MhlI GDGCHC 2 cut(s) 53, 119
MluCI AATT 2 cut(s) 289, 357
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 68, 70, 103
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 2 cut(s) 360, 369
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 3 cut(s) 41, 152, 167
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 5 cut(s) 41, 89, 245, 280, 285
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 310
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 137, 256
NlaIV GGNNCC 3 cut(s) 6, 156, 208
NmeAIII GCCGAG 4 cut(s) 61, 79, 82, 265
NmuCI GTSAC 2 cut(s) 73, 352
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 4 cut(s) 94, 97, 105, 278
PleI GAGTC 3 cut(s) 67, 70, 103
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 67, 70, 103
PshBI ATTAAT 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 6, 156, 208
PspPI GGNCC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 350
SacI GAGCTC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 360, 369
SatI GCNGC 4 cut(s) 93, 96, 104, 277
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 3 cut(s) 68, 70, 103
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 53, 119
SetI ASST 6 cut(s) 100, 119, 133, 318, 325, 375
SfaNI GCATC 1 cut(s) 354
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 350
Sse9I AATT 2 cut(s) 289, 357
SsiI CCGC 4 cut(s) 54, 93, 103, 176
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 340
TasI AATT 2 cut(s) 289, 357
TauI GCSGC 2 cut(s) 95, 106
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 360, 369
Tru9I TTAA 2 cut(s) 360, 369
TseFI GTSAC 2 cut(s) 73, 352
TseI GCWGC 2 cut(s) 95, 276
Tsp45I GTSAC 2 cut(s) 73, 352
TspDTI ATGAA 2 cut(s) 269, 282
VspI ATTAAT 1 cut(s) 360
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.