Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Forward (+)

10667898 .. 10670127

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTTTCCATGACTACTTCATCTTCTTCGTACGGAACATTCTCTACAGTCGTCAACAGTTCTAGACCTAATTCCTCAGCAACCTTTCTCGTCCCTTCCTTGAAATTCTCCACCGGAATATCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAATCTCCAATTAATCCTGGGTTTCTCTTCAAGTCTCGTCCTTTCACTGTCCAAGCTAGAGCTGCTGCAGAAAAAACCGTTCACGATTTCACCGTTAAGGACATTGATGGGAAGGATGTTGCTTTGAACAAATTCAAGGGGAAAGTTATGTTGATTGTCAATGTTGCTTCAAGATGTGGTTTGACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAAATACAAAACTCAAGGATTTGAGATTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCCGAGATCAAACAATTCGCTTGCACCCGGTTTAAAGCAGAGTTCCCTATATTTGATAAGGTTGACGTGAATGGACCAAGCACAGCGCCGATCTACGAGTTCTTGAAATCAAACGCAGGAGGATTCTTGGGTGGTCTCATTAAATGGAACTTTGAGAAGTTCTTGATTGATAAAAAGGGAAAGGTCGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAGAAAGACATCCAGAAGTTGCTTGCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

236

Amino Acids

26.02

Weight (kDa)

9.42

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	75 - 140	2.7e-07	Redoxin
AhpC-TSA	PF00578	77 - 141	2.7e-07	AhpC/TSA family
GSHPx	PF00255	79 - 187	2.3e-42	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	648
AccII	CGCG	1 cut(s)	131
AciI	CCGC	1 cut(s)	705
AcsI	RAATTY	3 cut(s)	104, 124, 287
AfaI	GTAC	3 cut(s)	32, 374, 650
AgsI	TTSAA	6 cut(s)	103, 187, 283, 292, 327, 559
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	212, 218, 361, 410
AluI	AGCT	4 cut(s)	212, 218, 361, 410
Alw26I	GTCTC	2 cut(s)	195, 593
Ama87I	CYCGRG	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	218, 221
ApoI	RAATTY	3 cut(s)	104, 124, 287
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	287
Asp718I	GGTACC	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	3 cut(s)	444, 445, 481
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	205, 208
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	3 cut(s)	444, 445, 481
BcoDI	GTCTC	2 cut(s)	195, 593
BfaI	CTAG	3 cut(s)	63, 213, 407
BfmI	CTRYAG	2 cut(s)	45, 222
BfoI	RGCGCY	1 cut(s)	542
BisI	GCNGC	3 cut(s)	219, 222, 705
BlsI	GCNGC	3 cut(s)	220, 223, 706
Bme1390I	CCNGG	4 cut(s)	174, 444, 445, 481
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	4 cut(s)	174, 444, 445, 481
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
Bpu10I	CCTNAGC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	3 cut(s)	444, 445, 481
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	173, 443
BsaWI	WCCGGW	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	173, 443
BseGI	GGATG	3 cut(s)	277, 662, 687
BseMII	CTCAG	3 cut(s)	90, 128, 369
BseXI	GCAGC	2 cut(s)	205, 208
Bsh1236I	CGCG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	3 cut(s)	114, 444, 481
BsiWI	CGTACG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	195, 593
BsmFI	GGGAC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	593
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	459, 543
Bsp68I	TCGCGA	1 cut(s)	131
BspACI	CCGC	1 cut(s)	705
BspCNI	CTCAG	3 cut(s)	89, 129, 368
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	650
BspMAI	CTGCAG	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	173, 443
BssMI	GATC	2 cut(s)	459, 543
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	5 cut(s)	49, 59, 205, 235, 250
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	475, 702
BstDEI	CTNAG	3 cut(s)	76, 137, 355
BstF5I	GGATG	3 cut(s)	277, 662, 687
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	462, 546
BstMAI	GTCTC	2 cut(s)	195, 593
BstMBI	GATC	2 cut(s)	459, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	4 cut(s)	172, 442, 443, 479
BstSFI	CTRYAG	2 cut(s)	45, 222
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	205, 208
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	3 cut(s)	277, 662, 687
BtsIMutI	CAGTG	1 cut(s)	201
BtuMI	TCGCGA	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	475, 702
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	527
Cfr9I	CCCGGG	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	31, 373, 649
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	212, 218, 361, 410, 442
CviKI_1	RGCY	5 cut(s)	212, 218, 361, 410, 442
CviQI	GTAC	3 cut(s)	31, 373, 649
DdeI	CTNAG	3 cut(s)	76, 137, 355
DpnI	GATC	2 cut(s)	461, 545
DpnII	GATC	2 cut(s)	459, 543
DraI	TTTAAA	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	1 cut(s)	13
FaiI	YATR	3 cut(s)	11, 305, 503
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	219, 222, 705
FokI	GGATG	3 cut(s)	284, 649, 674
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	3 cut(s)	219, 222, 705
FspBI	CTAG	3 cut(s)	63, 213, 407
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	3 cut(s)	219, 222, 705
HaeII	RGCGCY	1 cut(s)	542
HapII	CCGG	3 cut(s)	114, 444, 481
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	2 cut(s)	55, 517
HindII	GTYRAC	2 cut(s)	55, 517
HinfI	GANTC	3 cut(s)	133, 403, 576
HpaII	CCGG	3 cut(s)	114, 444, 481
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	55, 238, 517
Hpy188I	TCNGA	3 cut(s)	138, 358, 457
Hpy188III	TCNNGA	8 cut(s)	63, 130, 239, 327, 556, 616, 679, 691
Hpy8I	GTNNAC	3 cut(s)	55, 238, 517
HpyAV	CCTTC	2 cut(s)	105, 262
HpyCH4III	ACNGT	5 cut(s)	49, 59, 205, 235, 250
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	224, 420, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	76, 137, 355
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	539
KpnI	GGTACC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	459, 543
LpnPI	CCDG	8 cut(s)	127, 159, 186, 430, 457, 494, 555, 704
Lsp1109I	GCAGC	2 cut(s)	205, 208
MaeI	CTAG	3 cut(s)	63, 213, 407
MaeII	ACGT	1 cut(s)	519
MalI	GATC	2 cut(s)	461, 545
MboI	GATC	2 cut(s)	459, 543
MboII	GAAGA	3 cut(s)	15, 18, 175
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	7 cut(s)	70, 104, 124, 165, 287, 349, 467
MnlI	CCTC	4 cut(s)	85, 566, 639, 663
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	5 cut(s)	168, 252, 486, 594, 709
MspI	CCGG	3 cut(s)	114, 444, 481
MspR9I	CCNGG	4 cut(s)	174, 444, 445, 481
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	3 cut(s)	444, 445, 481
NdeII	GATC	2 cut(s)	459, 543
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	650
NruI	TCGCGA	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 246
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	133, 403, 576
Pfl23II	CGTACG	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	220, 223, 706
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspLI	CGTACG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	1 cut(s)	527
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
PstI	CTGCAG	1 cut(s)	226
RruI	TCGCGA	1 cut(s)	131
RsaI	GTAC	3 cut(s)	32, 374, 650
RsaNI	GTAC	3 cut(s)	31, 373, 649
SaqAI	TTAA	5 cut(s)	168, 252, 486, 594, 709
SatI	GCNGC	3 cut(s)	219, 222, 705
Sau3AI	GATC	2 cut(s)	459, 543
Sau96I	GGNCC	1 cut(s)	527
ScrFI	CCNGG	4 cut(s)	174, 444, 445, 481
SduI	GDGCHC	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	45, 222
SinI	GGWCC	1 cut(s)	527
SmaI	CCCGGG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	7 cut(s)	70, 104, 124, 165, 287, 349, 467
SsiI	CCGC	1 cut(s)	705
SspMI	CTAG	3 cut(s)	63, 213, 407
StyD4I	CCNGG	4 cut(s)	172, 442, 443, 479
TaaI	ACNGT	5 cut(s)	49, 59, 205, 235, 250
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	122, 678
TasI	AATT	7 cut(s)	70, 104, 124, 165, 287, 349, 467
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	3 cut(s)	133, 403, 576
Tru1I	TTAA	5 cut(s)	168, 252, 486, 594, 709
Tru9I	TTAA	5 cut(s)	168, 252, 486, 594, 709
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	2 cut(s)	218, 221
TspDTI	ATGAA	1 cut(s)	9
TspGWI	ACGGA	1 cut(s)	48
TspMI	CCCGGG	1 cut(s)	443
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	527
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	3 cut(s)	104, 124, 287
XbaI	TCTAGA	1 cut(s)	62
XmaI	CCCGGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	3 cut(s)	63, 213, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.