Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Forward (+)

2945092 .. 2947874

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1042100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCTTCACAGAATCACATTGCCTCGACCGGCGAATTATCGTGAAGAGCTCTGCAACTCCCGAAATTCCATATTTCCACCGAGTTCCAGAGTCCCCACCAGCAAAACAATGGCTTCCATGTCCTTCTTTGGAACTTTTTCAACACCTTCACAGGGGTTTTCTCAAACAAAAGCAAGCTCGAATTCTTCAGCTTCATGCCCTCCCATGGCGTGCTGGATCAAATCCTCACTTGGGTCTTCGCAATCAGCACTTTTCCGAAATGGGTTGTCTTTGCAATCGGAAAATTTTAATGGGGTTTTGTTCAAATCTCGGTCTTTGAGTGTTTATGCAAGAGCAGCTACAGAGAAAAGTCTTTATGATTTCACTGTCAAGGATATTGATGCTAAGGATGTTCCTCTTAGGAAGTTCAAGGGGAAGGTTCTTTTGATTGTCAATGTTGCTTCAAGATGTGGCTTGACTTCTTCAAATTACTCAGAACTGTCACACTTGTATGAGAAATACAAAACACAAGGATTTGAGATTCTAGCATTCCCTTGCAATCAGTTTGGGGGCCAAGAACCCGGATCAAATGGGGAAATCAAGCAGTTTGCTTGTACAAGGTTTAAAGCCGAATTCCCGATTTTTGATAAGGTTGATGTCAACGGTCCCAGCACAGCTCCGGTTTACCAGTTTCTGAAATCAAATGCAGGAGGTTTTCTAGGTGACATTATCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTTGTTGAGAGATACCCACCAACGACATCCCCTTTTCAAATTGAGAAGGATATCCAGAAACTGGTCGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

276

Amino Acids

30.47

Weight (kDa)

9.45

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	118 - 226	3.3e-42	Glutathione peroxidase
AhpC-TSA	PF00578	118 - 180	1e-05	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	814
AclWI	GGATC	2 cut(s)	224, 571
AcsI	RAATTY	5 cut(s)	64, 181, 283, 611, 718
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	4 cut(s)	152, 205, 231, 814
AgsI	TTSAA	6 cut(s)	141, 304, 409, 444, 465, 791
AluBI	AGCT	6 cut(s)	49, 177, 191, 338, 656, 824
AluI	AGCT	6 cut(s)	49, 177, 191, 338, 656, 824
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	224, 571
AlwNI	CAGNNNCTG	2 cut(s)	673, 814
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	2 cut(s)	335, 821
ApoI	RAATTY	5 cut(s)	64, 181, 283, 611, 718
Asp700I	GAANNNNTTC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	550, 644
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	561
BfaI	CTAG	2 cut(s)	524, 698
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	336, 822
BlsI	GCNGC	2 cut(s)	337, 823
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	550, 644
BmiI	GGNNCC	2 cut(s)	551, 646
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 205, 231, 814
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	667, 819
Bse3DI	GCAATG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	394, 779
BseLI	CCNNNNNNNGG	4 cut(s)	152, 205, 231, 814
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	667, 819
BseXI	GCAGC	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	647
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	552
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	29, 561, 659
BslFI	GGGAC	2 cut(s)	77, 630
BslI	CCNNNNNNNGG	4 cut(s)	152, 205, 231, 814
BsmFI	GGGAC	2 cut(s)	77, 630
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	593
Bsp143I	GATC	2 cut(s)	216, 563
Bsp19I	CCATGG	1 cut(s)	204
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	1 cut(s)	485
BspLI	GGNNCC	2 cut(s)	551, 646
BspPI	GGATC	2 cut(s)	224, 571
BspQI	GCTCTTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	593
BsrI	ACTGG	2 cut(s)	667, 819
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	216, 563
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	367, 480, 644
Bst6I	CTCTTC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	175, 211
BstDEI	CTNAG	3 cut(s)	384, 398, 472
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	394, 779
BstKTI	GATC	2 cut(s)	219, 566
BstMBI	GATC	2 cut(s)	216, 563
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	552
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	394, 779
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	175, 211
CaiI	CAGNNNCTG	2 cut(s)	673, 814
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	550, 644
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	3 cut(s)	118, 195, 205
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	3 cut(s)	384, 398, 472
DpnI	GATC	2 cut(s)	218, 565
DpnII	GATC	2 cut(s)	216, 563
DraI	TTTAAA	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	49
EcoRI	GAATTC	2 cut(s)	181, 611
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	121, 198, 208
FaiI	YATR	7 cut(s)	71, 119, 196, 206, 327, 357, 492
FaqI	GGGAC	2 cut(s)	77, 630
FatI	CATG	3 cut(s)	117, 194, 204
Fnu4HI	GCNGC	2 cut(s)	336, 822
FokI	GGATG	2 cut(s)	401, 766
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	336, 822
FspBI	CTAG	2 cut(s)	524, 698
GluI	GCNGC	2 cut(s)	336, 822
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	3 cut(s)	29, 561, 659
Hin1II	CATG	3 cut(s)	121, 198, 208
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	3 cut(s)	12, 90, 520
HpaII	CCGG	3 cut(s)	29, 561, 659
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	3 cut(s)	640, 664, 739
Hpy188I	TCNGA	4 cut(s)	257, 280, 475, 675
Hpy188III	TCNNGA	6 cut(s)	41, 60, 87, 444, 616, 808
Hpy8I	GTNNAC	3 cut(s)	640, 664, 739
HpyAV	CCTTC	4 cut(s)	133, 156, 409, 793
HpyCH4III	ACNGT	3 cut(s)	367, 480, 644
HpyCH4V	TGCA	5 cut(s)	54, 274, 329, 537, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	384, 398, 472
Hsp92II	CATG	3 cut(s)	121, 198, 208
Kzo9I	GATC	2 cut(s)	216, 563
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	524, 698
MaeIII	GTNAC	2 cut(s)	480, 701
MalI	GATC	2 cut(s)	218, 565
MboI	GATC	2 cut(s)	216, 563
MboII	GAAGA	4 cut(s)	56, 177, 228, 453
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	8 cut(s)	34, 64, 181, 283, 466, 611, 718, 792
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	5 cut(s)	33, 210, 235, 405, 683
MroXI	GAANNNNTTC	1 cut(s)	136
MseI	TTAA	2 cut(s)	288, 603
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	3 cut(s)	29, 561, 659
MspR9I	CCNGG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	561
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	2 cut(s)	216, 563
NlaIII	CATG	3 cut(s)	121, 198, 208
NlaIV	GGNNCC	2 cut(s)	551, 646
NmuCI	GTSAC	2 cut(s)	480, 701
PciSI	GCTCTTC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	12, 520
PflMI	CCANNNNNTGG	1 cut(s)	814
PkrI	GCNGC	2 cut(s)	337, 823
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	551, 646
PspPI	GGNCC	2 cut(s)	550, 644
PstNI	CAGNNNCTG	2 cut(s)	673, 814
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	288, 603
SatI	GCNGC	2 cut(s)	336, 822
Sau3AI	GATC	2 cut(s)	216, 563
Sau96I	GGNCC	2 cut(s)	550, 644
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	8 cut(s)	34, 64, 181, 283, 466, 611, 718, 792
SspMI	CTAG	2 cut(s)	524, 698
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	367, 480, 644
TaqI	TCGA	2 cut(s)	25, 179
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	8 cut(s)	34, 64, 181, 283, 466, 611, 718, 792
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	12, 520
Tru1I	TTAA	2 cut(s)	288, 603
Tru9I	TTAA	2 cut(s)	288, 603
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	480, 701
TseI	GCWGC	2 cut(s)	335, 821
Tsp45I	GTSAC	2 cut(s)	480, 701
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	644
XapI	RAATTY	5 cut(s)	64, 181, 283, 611, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	136
XspI	CTAG	2 cut(s)	524, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.