Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Reverse (-)

4303047 .. 4306911

Gene Structure 3865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1055100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTTCCATGTCCTTCTCTGCAACATTTTCAACACCTTTACAGAGTTTTTCTCAAGCAAAAGCAAAAATAAGCTCGAATTCTTCAGCTTCATGCCCTCCCATGGCGTGCTGGATCAAATACTCACTTGGGTCTTCTAAATCAGCACTTTTCCGAAATGGGTTGTCTTTGCAATCGGAGAATTTTAATGGGGTTTTGATCAAATCTCGGTCTTTGGGTGTTTATGCTAGAGCAGCTACAGAAAGGTCTCTCTATGATTTCACTGTCAAGGATATTGATGGTAAGGATGTTCCTCTTAGCAAGTTCAAGGGGAAGGTTCTTTTGGTTGTCAATGTTGCTTCAAGATGTGGCTTGACTTCTTCAAATTACTCAGAACTGTCACACTTGTATGAGAAGTACAAACCTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCCGGATCAAATGGGGAAATCAAGCAGTTTGCTTGTACAAGGTTTAAAGCCGAATTCCCGATTTTTGACAAGGTTGATGTCAACGGTCCCAGCACAGCTCCAGTTTACCAGTTTCTGAAATCAATTGCAGGAGGTTTTCTAGGTGACATTATAAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGAAAAGTTGTTGAGAGATACCCACCAACGACATCCCCTTTTCAAATTGAGAAGGATATCCAGAAACTGGTCGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

242

Amino Acids

26.47

Weight (kDa)

9.27

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	84 - 192	3.3e-43	Glutathione peroxidase
AhpC-TSA	PF00578	85 - 146	5.3e-07	AhpC/TSA family
Redoxin	PF08534	86 - 143	1.4e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	712
AclWI	GGATC	2 cut(s)	122, 469
AcsI	RAATTY	4 cut(s)	79, 181, 509, 616
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	398, 493
AfiI	CCNNNNNNNGG	2 cut(s)	103, 712
AgsI	TTSAA	5 cut(s)	33, 307, 342, 363, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	6 cut(s)	75, 89, 236, 425, 554, 722
AluI	AGCT	6 cut(s)	75, 89, 236, 425, 554, 722
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	122, 469
AlwNI	CAGNNNCTG	2 cut(s)	571, 712
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	233, 719
ApoI	RAATTY	4 cut(s)	79, 181, 509, 616
AspS9I	GGNCC	2 cut(s)	448, 542
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	272
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	3 cut(s)	228, 422, 596
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	234, 720
BlsI	GCNGC	2 cut(s)	235, 721
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	448, 542
BmiI	GGNNCC	2 cut(s)	449, 544
BmrFI	CCNGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	2 cut(s)	39, 390
BpuMI	CCSGG	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 712
Bse1I	ACTGG	3 cut(s)	557, 565, 717
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	292, 677
BseLI	CCNNNNNNNGG	2 cut(s)	103, 712
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	557, 565, 717
BseXI	GCAGC	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	545
BshFI	GGCC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	103, 712
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	114, 198, 461
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	449, 544
BspPI	GGATC	2 cut(s)	122, 469
BspTNI	GGTCTC	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	491
BsrI	ACTGG	3 cut(s)	557, 565, 717
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	3 cut(s)	114, 198, 461
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	265, 378, 542
BstAUI	TGTACA	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	296, 370
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	292, 677
BstKTI	GATC	3 cut(s)	117, 201, 464
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	3 cut(s)	114, 198, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	292, 677
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	2 cut(s)	571, 712
Cfr13I	GGNCC	2 cut(s)	448, 542
Csp6I	GTAC	2 cut(s)	397, 492
CviAII	CATG	3 cut(s)	10, 93, 103
CviQI	GTAC	2 cut(s)	397, 492
DdeI	CTNAG	2 cut(s)	296, 370
DpnI	GATC	3 cut(s)	116, 200, 463
DpnII	GATC	3 cut(s)	114, 198, 461
DraI	TTTAAA	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	69
EcoRI	GAATTC	2 cut(s)	79, 509
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	3 cut(s)	13, 96, 106
FaiI	YATR	7 cut(s)	11, 94, 104, 225, 255, 390, 608
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	3 cut(s)	9, 92, 102
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	234, 720
FokI	GGATG	2 cut(s)	299, 664
Fsp4HI	GCNGC	2 cut(s)	234, 720
FspBI	CTAG	3 cut(s)	228, 422, 596
GluI	GCNGC	2 cut(s)	234, 720
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	459
Hin1II	CATG	3 cut(s)	13, 96, 106
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	3 cut(s)	538, 562, 637
Hpy188I	TCNGA	4 cut(s)	155, 178, 373, 573
Hpy188III	TCNNGA	3 cut(s)	342, 514, 706
Hpy8I	GTNNAC	3 cut(s)	538, 562, 637
HpyAV	CCTTC	3 cut(s)	25, 307, 691
HpyCH4III	ACNGT	3 cut(s)	265, 378, 542
HpyCH4V	TGCA	4 cut(s)	23, 172, 435, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	296, 370
Hsp92II	CATG	3 cut(s)	13, 96, 106
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	114, 198, 461
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	8 cut(s)	97, 472, 559, 570, 570, 578, 698, 719
Lsp1109I	GCAGC	1 cut(s)	245
MaeI	CTAG	3 cut(s)	228, 422, 596
MaeIII	GTNAC	2 cut(s)	378, 599
MalI	GATC	3 cut(s)	116, 200, 463
MboI	GATC	3 cut(s)	114, 198, 461
MboII	GAAGA	3 cut(s)	75, 126, 351
MfeI	CAATTG	1 cut(s)	579
MluCI	AATT	7 cut(s)	79, 181, 364, 509, 579, 616, 690
MnlI	CCTC	4 cut(s)	108, 303, 414, 581
MseI	TTAA	2 cut(s)	186, 501
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	114, 198, 461
NlaIII	CATG	3 cut(s)	13, 96, 106
NlaIV	GGNNCC	2 cut(s)	449, 544
NmuCI	GTSAC	2 cut(s)	378, 599
PfeI	GAWTC	1 cut(s)	418
PflMI	CCANNNNNTGG	1 cut(s)	712
PkrI	GCNGC	2 cut(s)	235, 721
PsiI	TTATAA	1 cut(s)	608
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	449, 544
PspPI	GGNCC	2 cut(s)	448, 542
PstNI	CAGNNNCTG	2 cut(s)	571, 712
RsaI	GTAC	2 cut(s)	398, 493
RsaNI	GTAC	2 cut(s)	397, 492
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	186, 501
SatI	GCNGC	2 cut(s)	234, 720
Sau3AI	GATC	3 cut(s)	114, 198, 461
Sau96I	GGNCC	2 cut(s)	448, 542
ScrFI	CCNGG	1 cut(s)	459
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	54, 405
SmoI	CTYRAG	2 cut(s)	54, 405
Sse9I	AATT	7 cut(s)	79, 181, 364, 509, 579, 616, 690
SspMI	CTAG	3 cut(s)	228, 422, 596
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	265, 378, 542
TaqI	TCGA	1 cut(s)	77
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	7 cut(s)	79, 181, 364, 509, 579, 616, 690
TatI	WGTACW	2 cut(s)	396, 491
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	186, 501
Tru9I	TTAA	2 cut(s)	186, 501
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	378, 599
TseI	GCWGC	2 cut(s)	233, 719
Tsp45I	GTSAC	2 cut(s)	378, 599
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	4 cut(s)	79, 181, 509, 616
XspI	CTAG	3 cut(s)	228, 422, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.