Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Forward (+)

9591388 .. 9593854

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTTCCGTTTCTCTCTCTTCAACAGTTCCAACAGGATATGTTCGGACGAAAACAAAAACAAAAACAAAAACAAGCCCAAGTAGTTCAGCTCCATGCCCATCCATGGCTTTCTCGATCCCGCCCATCAAATCCTCACTCGGCTCCTCTAAATCATCACTTTTCCAACCTGGCTTCTCTCTACAATCATCTTATTCAAATGGGCGCTTCTTCAAATCCCGTCACTCGGGTGTTTATGCAAGAGCAGCTACTGAGAAGACTCTCTATGATTTTACAGTCAAGGATTTTGGTTTTTCGAAGGATATCGATGGAAAGGATGTCCCTCTTAGCAAATTTAAGGGGAAGGTTCTTTTGGTTGTCAACGTTGCTTCAAAATGTGGCTTGACCTCTTCAAATTACTCAGAACTGTCACATGTGTATGAGAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCGGGATCAAATACGGAAATCAAGCAATTTGCTTGTACACGGTATAAAGCCGAATTCCCCATTTTTGATAAGGTTGATGTCAATGGTCCCAGCACAGCTCCGGTTTATCAGTTTCTGAAATCAAGTGCGGGAGGTTTCTTAGGTGACATTGTCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTAGTGGAGAGGTATCCACCAACAACATCACCTTTTCAAATTGAGAAGGATATCCAGAAACTGGTTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

251

Amino Acids

27.49

Weight (kDa)

9.5

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	89 - 158	1e-05	AhpC/TSA family
Redoxin	PF08534	95 - 153	1.3e-06	Redoxin
GSHPx	PF00255	99 - 202	3.6e-41	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	742
AciI	CCGC	2 cut(s)	122, 614
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	2 cut(s)	112, 499
AcsI	RAATTY	3 cut(s)	332, 539, 646
AfaI	GTAC	2 cut(s)	428, 523
AfiI	CCNNNNNNNGG	4 cut(s)	106, 226, 487, 742
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	6 cut(s)	24, 198, 214, 372, 393, 719
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	5 cut(s)	92, 248, 455, 584, 752
AluI	AGCT	5 cut(s)	92, 248, 455, 584, 752
AlwI	GGATC	2 cut(s)	112, 499
AlwNI	CAGNNNCTG	3 cut(s)	251, 601, 742
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	245, 749
ApoI	RAATTY	3 cut(s)	332, 539, 646
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	478, 572
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	2 cut(s)	641, 702
AsuII	TTCGAA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	3 cut(s)	109, 134, 302
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	489
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	705
BisI	GCNGC	2 cut(s)	246, 750
BlsI	GCNGC	2 cut(s)	247, 751
Bme1390I	CCNGG	2 cut(s)	171, 489
Bme18I	GGWCC	1 cut(s)	572
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	478, 572
BmiI	GGNNCC	3 cut(s)	145, 479, 574
BmrFI	CCNGG	2 cut(s)	171, 489
BpiI	GAAGAC	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	489
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 226, 487, 742
Bse1I	ACTGG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	101, 322
BseLI	CCNNNNNNNGG	4 cut(s)	106, 226, 487, 742
BseMII	CTCAG	2 cut(s)	243, 414
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	575
BshFI	GGCC	1 cut(s)	480
BshVI	ATCGAT	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	488, 587
BslFI	GGGAC	2 cut(s)	305, 558
BslI	CCNNNNNNNGG	4 cut(s)	106, 226, 487, 742
BsmFI	GGGAC	2 cut(s)	305, 558
BsnI	GGCC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	117, 491
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	2 cut(s)	122, 614
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	2 cut(s)	244, 413
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	145, 479, 574
BspPI	GGATC	2 cut(s)	112, 499
BspT104I	TTCGAA	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	747
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	117, 491
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	28, 277, 408, 528
Bst6I	CTCTTC	2 cut(s)	25, 394
BstAUI	TGTACA	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	296
BstDEI	CTNAG	4 cut(s)	252, 326, 400, 625
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	101, 322
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	2 cut(s)	120, 494
BstMBI	GATC	2 cut(s)	117, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	169, 487
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	101, 322
CaiI	CAGNNNCTG	3 cut(s)	251, 601, 742
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	478, 572
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	427, 522
CviAII	CATG	3 cut(s)	96, 106, 413
CviQI	GTAC	2 cut(s)	427, 522
DdeI	CTNAG	4 cut(s)	252, 326, 400, 625
DpnI	GATC	2 cut(s)	119, 493
DpnII	GATC	2 cut(s)	117, 491
Eam1104I	CTCTTC	2 cut(s)	25, 394
EarI	CTCTTC	2 cut(s)	25, 394
Eco130I	CCWWGG	1 cut(s)	105
Eco32I	GATATC	2 cut(s)	304, 733
Eco47I	GGWCC	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	2 cut(s)	304, 733
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	99, 109, 416
FaiI	YATR	8 cut(s)	42, 97, 107, 237, 267, 414, 420, 531
FaqI	GGGAC	2 cut(s)	305, 558
FatI	CATG	3 cut(s)	95, 105, 412
FauI	CCCGC	2 cut(s)	129, 607
Fnu4HI	GCNGC	2 cut(s)	246, 750
FokI	GGATG	2 cut(s)	88, 329
Fsp4HI	GCNGC	2 cut(s)	246, 750
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	2 cut(s)	246, 750
GsaI	CCCAGC	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	2 cut(s)	488, 587
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	99, 109, 416
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	259, 448
HpaII	CCGG	2 cut(s)	488, 587
HphI	GGTGA	2 cut(s)	641, 702
Hpy166II	GTNNAC	3 cut(s)	361, 524, 667
Hpy188I	TCNGA	3 cut(s)	48, 403, 603
Hpy188III	TCNNGA	2 cut(s)	115, 736
Hpy8I	GTNNAC	3 cut(s)	361, 524, 667
HpyAV	CCTTC	3 cut(s)	292, 337, 721
HpyCH4III	ACNGT	4 cut(s)	28, 277, 408, 528
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	239, 465, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	4 cut(s)	252, 326, 400, 625
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	99, 109, 416
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	117, 491
LmnI	GCTCC	3 cut(s)	97, 149, 589
LpnPI	CCDG	8 cut(s)	21, 156, 183, 501, 589, 600, 728, 749
Lsp1109I	GCAGC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	221, 408, 629
MalI	GATC	2 cut(s)	119, 493
MboI	GATC	2 cut(s)	117, 491
MboII	GAAGA	4 cut(s)	12, 202, 268, 381
MluCI	AATT	6 cut(s)	332, 394, 512, 539, 646, 720
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	56, 190
MnlI	CCTC	6 cut(s)	145, 157, 333, 397, 611, 684
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	228, 417
MspI	CCGG	2 cut(s)	488, 587
MspR9I	CCNGG	2 cut(s)	171, 489
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	117, 491
NlaIII	CATG	3 cut(s)	99, 109, 416
NlaIV	GGNNCC	3 cut(s)	145, 479, 574
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	3 cut(s)	221, 408, 629
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	228
PciI	ACATGT	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	448
PflFI	GACNNNGTC	1 cut(s)	635
PflMI	CCANNNNNTGG	1 cut(s)	742
PkrI	GCNGC	2 cut(s)	247, 751
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	412
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	145, 479, 574
PspPI	GGNCC	2 cut(s)	478, 572
PstNI	CAGNNNCTG	3 cut(s)	251, 601, 742
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	2 cut(s)	428, 523
RsaNI	GTAC	2 cut(s)	427, 522
RseI	CAYNNNNRTG	2 cut(s)	228, 417
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	246, 750
Sau3AI	GATC	2 cut(s)	117, 491
Sau96I	GGNCC	2 cut(s)	478, 572
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	171, 489
SfuI	TTCGAA	1 cut(s)	296
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	228, 417
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	6 cut(s)	332, 394, 512, 539, 646, 720
SsiI	CCGC	2 cut(s)	122, 614
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	169, 487
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	28, 277, 408, 528
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	116, 296, 306
TasI	AATT	6 cut(s)	332, 394, 512, 539, 646, 720
TatI	WGTACW	2 cut(s)	426, 521
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	3 cut(s)	221, 408, 629
TseI	GCWGC	2 cut(s)	245, 749
Tsp45I	GTSAC	3 cut(s)	221, 408, 629
TspGWI	ACGGA	1 cut(s)	515
Tth111I	GACNNNGTC	1 cut(s)	635
Van91I	CCANNNNNTGG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	3 cut(s)	332, 539, 646
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.