Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Reverse (-)

63349375 .. 63351397

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG406900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGCTGTTTTAGAAGAGACTTTCTCAAAACTCTTATTAGAGTTTCCAAGCAGACGAAAATGGCTTCCATCTCTCTCTCTCCAACAGTTGCAACAGGATACGTTCAAACGAAAACAAAAAGAAGCCCAAGTAGTAGTTCAGCTCCATGCCCATCCATGGCTTTCTCGATCAAATCCTCACTCGGCTCCTCTAAATCATCACTTTTCCAACATGGCTTCTCTCTTCTACAATCATCTTATTCAAATGGGCGCTTCTTCAAATCCCGTCACTCTCACTCGGGTGTTTATGCAAGAGCAGCTACTGAGAAGACTCTCTATGATTTTACAGTCAAGGATATCGATGGAAAGGATGTCCCTCTTAGCAAGTTTAAGGGGAAGGTTCTTTTGGTTGTCAACGTTGCTTCAAAATGTGGCTTGACCTCTTCAAATTACTCAGAACTGTCACATGTGTATGAGAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCGGGATCAAATACAGAAATCAAGCAATTTGCTTGTACACGGTATAAAGCCGAATACCCCATTTTTGATAAGGTTGATGTCAATGGTCCCAGCACAGCTCCGGTTTATCAGTTTCTGAAATCAAGTGTGGGAGGTTTCTTAGGTGACATTGTCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTAGTGGAGAGGTATCCACCAACAACATCACCTTTTCAAATTGAGAAGGATATCCAGAAACTGGTTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

262

Amino Acids

29.01

Weight (kDa)

9.61

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	104 - 164	8.8e-07	Redoxin
GSHPx	PF00255	105 - 213	1.2e-42	Glutathione peroxidase
AhpC-TSA	PF00578	105 - 168	3.8e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	775
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	1 cut(s)	679
AfaI	GTAC	2 cut(s)	461, 556
AfiI	CCNNNNNNNGG	3 cut(s)	157, 520, 775
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	6 cut(s)	107, 243, 259, 405, 426, 752
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 368, 400
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	6 cut(s)	6, 143, 299, 488, 617, 785
AluI	AGCT	6 cut(s)	6, 143, 299, 488, 617, 785
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	532
AlwNI	CAGNNNCTG	3 cut(s)	302, 634, 775
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	2 cut(s)	296, 782
ApoI	RAATTY	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	511, 605
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	2 cut(s)	674, 735
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	77, 160, 335
BciVI	GTATCC	2 cut(s)	92, 738
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	253
BfuI	GTATCC	2 cut(s)	92, 738
BisI	GCNGC	2 cut(s)	297, 783
BlsI	GCNGC	2 cut(s)	298, 784
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	511, 605
BmiI	GGNNCC	3 cut(s)	187, 512, 607
BmrFI	CCNGG	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 520, 775
Bse1I	ACTGG	1 cut(s)	780
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	152, 355
BseLI	CCNNNNNNNGG	3 cut(s)	157, 520, 775
BseMII	CTCAG	2 cut(s)	294, 447
BseNI	ACTGG	1 cut(s)	780
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	308
BseYI	CCCAGC	1 cut(s)	608
BshFI	GGCC	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	521, 620
BslFI	GGGAC	2 cut(s)	338, 591
BslI	CCNNNNNNNGG	3 cut(s)	157, 520, 775
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	338, 591
BsnI	GGCC	1 cut(s)	513
BsoBI	CYCGRG	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	168, 524
Bsp19I	CCATGG	1 cut(s)	156
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	2 cut(s)	295, 446
BspDI	ATCGAT	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	187, 512, 607
BspPI	GGATC	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	780
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	168, 524
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	4 cut(s)	88, 328, 441, 561
Bst6I	CTCTTC	3 cut(s)	10, 228, 427
BstAUI	TGTACA	1 cut(s)	554
BstDEI	CTNAG	4 cut(s)	303, 359, 433, 658
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	152, 355
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	171, 527
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	168, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	339
BsuI	GTATCC	2 cut(s)	92, 738
BsuRI	GGCC	1 cut(s)	513
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	152, 355
CaiI	CAGNNNCTG	3 cut(s)	302, 634, 775
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	511, 605
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	460, 555
CviAII	CATG	4 cut(s)	147, 157, 212, 446
CviQI	GTAC	2 cut(s)	460, 555
DdeI	CTNAG	4 cut(s)	303, 359, 433, 658
DpnI	GATC	2 cut(s)	170, 526
DpnII	GATC	2 cut(s)	168, 524
Eam1104I	CTCTTC	3 cut(s)	10, 228, 427
EarI	CTCTTC	3 cut(s)	10, 228, 427
Eco130I	CCWWGG	1 cut(s)	156
Eco32I	GATATC	2 cut(s)	337, 766
Eco47I	GGWCC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	277
EcoRV	GATATC	2 cut(s)	337, 766
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	150, 160, 215, 449
FaiI	YATR	8 cut(s)	148, 158, 213, 288, 318, 447, 453, 564
FaqI	GGGAC	2 cut(s)	338, 591
FatI	CATG	4 cut(s)	146, 156, 211, 445
Fnu4HI	GCNGC	2 cut(s)	297, 783
FokI	GGATG	2 cut(s)	139, 362
Fsp4HI	GCNGC	2 cut(s)	297, 783
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	297, 783
GsaI	CCCAGC	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	2 cut(s)	521, 620
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	150, 160, 215, 449
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	310, 481
HpaII	CCGG	2 cut(s)	521, 620
HphI	GGTGA	2 cut(s)	674, 735
Hpy166II	GTNNAC	3 cut(s)	394, 557, 700
Hpy188I	TCNGA	2 cut(s)	436, 636
Hpy188III	TCNNGA	2 cut(s)	166, 769
Hpy8I	GTNNAC	3 cut(s)	394, 557, 700
HpyAV	CCTTC	2 cut(s)	370, 754
HpyCH4III	ACNGT	4 cut(s)	88, 328, 441, 561
HpyCH4IV	ACGT	2 cut(s)	102, 396
HpyCH4V	TGCA	4 cut(s)	92, 290, 498, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	4 cut(s)	303, 359, 433, 658
HpySE526I	ACGT	2 cut(s)	102, 396
Hsp92II	CATG	4 cut(s)	150, 160, 215, 449
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	168, 524
LmnI	GCTCC	3 cut(s)	148, 191, 622
LpnPI	CCDG	6 cut(s)	81, 534, 622, 633, 761, 782
Lsp1109I	GCAGC	1 cut(s)	308
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	102, 396
MaeIII	GTNAC	3 cut(s)	266, 441, 662
MalI	GATC	2 cut(s)	170, 526
MboI	GATC	2 cut(s)	168, 524
MboII	GAAGA	5 cut(s)	27, 215, 247, 319, 414
MluCI	AATT	4 cut(s)	427, 545, 679, 753
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	2 cut(s)	107, 232
MnlI	CCTC	6 cut(s)	187, 199, 366, 430, 644, 717
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	2 cut(s)	279, 450
MspI	CCGG	2 cut(s)	521, 620
MspR9I	CCNGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	522
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	168, 524
NlaIII	CATG	4 cut(s)	150, 160, 215, 449
NlaIV	GGNNCC	3 cut(s)	187, 512, 607
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	3 cut(s)	266, 441, 662
NspI	RCATGY	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	279
PciI	ACATGT	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	481
PflFI	GACNNNGTC	1 cut(s)	668
PflMI	CCANNNNNTGG	1 cut(s)	775
PkrI	GCNGC	2 cut(s)	298, 784
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PscI	ACATGT	1 cut(s)	445
Psp1406I	AACGTT	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	608
PspN4I	GGNNCC	3 cut(s)	187, 512, 607
PspPI	GGNCC	2 cut(s)	511, 605
PstNI	CAGNNNCTG	3 cut(s)	302, 634, 775
PsyI	GACNNNGTC	1 cut(s)	668
RsaI	GTAC	2 cut(s)	461, 556
RsaNI	GTAC	2 cut(s)	460, 555
RseI	CAYNNNNRTG	2 cut(s)	279, 450
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	297, 783
Sau3AI	GATC	2 cut(s)	168, 524
Sau96I	GGNCC	2 cut(s)	511, 605
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	2 cut(s)	279, 450
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	427, 545, 679, 753
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	88, 328, 441, 561
TaiI	ACGT	2 cut(s)	105, 399
TaqI	TCGA	2 cut(s)	167, 339
TasI	AATT	4 cut(s)	427, 545, 679, 753
TatI	WGTACW	2 cut(s)	459, 554
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	3 cut(s)	266, 441, 662
TseI	GCWGC	2 cut(s)	296, 782
Tsp45I	GTSAC	3 cut(s)	266, 441, 662
Tth111I	GACNNNGTC	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.